track protein bigDataUrl https://data.broadinstitute.org/vgb/dog/dog/canFam3/annotation/canis_familiaris.protein_coding.bb shortLabel Prot Coding Genes longLabel Protein Coding Genes html html/proteinCoding type bigBed 12 + visibility pack priority 1 itemRgb on exonArrows on thickDrawItem on track antisense bigDataUrl https://data.broadinstitute.org/vgb/dog/dog/canFam3/annotation/canis_familiaris.antisense.bb shortLabel Antisense Txs longLabel Antisense Transcripts html html/antisense type bigBed 12 + visibility pack priority 2 itemRgb on exonArrows on thickDrawItem on track LNCRNA bigDataUrl https://data.broadinstitute.org/vgb/dog/dog/canFam3/annotation/canis_familiaris.lncRNA.bb shortLabel lincRNAs longLabel lincRNAs html html/lncRNA type bigBed 12 + visibility pack priority 3 itemRgb on exonArrows on thickDrawItem on track unclassified bigDataUrl https://data.broadinstitute.org/vgb/dog/dog/canFam3/annotation/canis_familiaris.unclassified.bb shortLabel Other NC Txs longLabel Other Non-coding Transcripts html html/unclassified type bigBed 12 + visibility pack priority 4 itemRgb on exonArrows on thickDrawItem on track survey_snps bigDataUrl https://data.broadinstitute.org/vgb/dog/dog/canFam3/variation/final.Broad.SNPs.vcf.gz shortLabel Survey SNPs longLabel SNPs from Lindblad-Toh et. al. and Vaysse et. al. html html/broadSNPs priority 5 type vcfTabix visibility dense track dom_snps bigDataUrl https://data.broadinstitute.org/vgb/dog/dog/canFam3/variation/final.Axelsson.SNPs.vcf.gz shortLabel Axelsson SNPs longLabel SNPs from Axelsson et. al. html html/axelssonSNPs priority 5.1 type vcfTabix visibility dense track illHD_markers bigDataUrl https://data.broadinstitute.org/vgb/dog/dog/canFam3/variation/final.illumina.canineHD.markers.bb shortLabel Illumina HD Markers longLabel Markers from the Illumina 170K Canine HD array html html/illuminaMarkers priority 5.2 type bigBed 4 visibility dense track pon_snps bigDataUrl https://data.broadinstitute.org/vgb/dog/dog/canFam3/variation/broad.canine.pon.germline.snps.vcf.gz shortLabel Germline PON SNPs longLabel Germline Pool of Normal SNP set from cancer studies html html/PON priority 5.3 type vcfTabix visibility dense track lymphoma_snps bigDataUrl https://data.broadinstitute.org/vgb/dog/dog/canFam3/variation/elvers.lymphoma.somatic.snps.vcf.gz shortLabel Lymphoma som SNPs longLabel Somatic canine lymphoma SNPs from Elvers et. al. html html/lymphoma priority 5.4 type vcfTabix visibility dense track dog_bacs bigDataUrl https://data.broadinstitute.org/vgb/dog/dog/canFam3/bacs/dogBACs.cf3.bb shortLabel dogBACs longLabel Canine CHORI-82 BACs mapped to canFam3 html html/dogBACs priority 5.9 type bigBed 12 visibility pack track miRNA_known_pre bigDataUrl https://data.broadinstitute.org/vgb/dog/dog/canFam3/miRNA/cf3_miRNA_known_precursors.bb shortLabel miR Known Hairpin longLabel Known mirBase miRNAs - Hairpin Structures html html/miRNA priority 5.51 type bigBed 6 visibility pack useScore 1 track miRNA_known_mat bigDataUrl https://data.broadinstitute.org/vgb/dog/dog/canFam3/miRNA/cf3_miRNA_known_mature.bb shortLabel miR Known Mature longLabel Known mirBase miRNAs - Mature Structures html html/miRNA priority 5.52 type bigBed 6 visibility pack useScore 1 track miRNA_new_pre bigDataUrl https://data.broadinstitute.org/vgb/dog/dog/canFam3/miRNA/cf3_miRNA_novel_precursors.bb shortLabel miR New Hairpins longLabel Novel miRNAs - Hairpin Structures html html/miRNA priority 5.53 type bigBed 6 visibility pack useScore 1 track miRNA_new_mat bigDataUrl https://data.broadinstitute.org/vgb/dog/dog/canFam3/miRNA/cf3_miRNA_novel_mature.bb shortLabel miR New Mature longLabel Novel miRNAs - Mature Structures html html/miRNA priority 5.54 type bigBed 6 visibility pack useScore 1 track CTVT_variation superTrack on group CTVT shortLabel CTVT Variation longLabel CTVT Variations from Germline and Somatic html html/CTVT priority 5.8 track CTVT_ind_Som bigDataUrl https://data.broadinstitute.org/vgb/dog/dog/canFam3/ostrander/CTVT_indels_somatic.vcf.gz parent CTVT_variation shortLabel CTVT Indels Somat longLabel CTVT Indels Somatic html html/CTVT priority 5.81 type vcfTabix visibility dense track CTVT_ind_Ger bigDataUrl https://data.broadinstitute.org/vgb/dog/dog/canFam3/ostrander/CTVT_indels_germline.vcf.gz parent CTVT_variation shortLabel CTVT Indels Germl longLabel CTVT Indels Germline html html/CTVT priority 5.82 type vcfTabix visibility dense track CTVT_SNV_Som bigDataUrl https://data.broadinstitute.org/vgb/dog/dog/canFam3/ostrander/CTVT_SNV_somatic.vcf.gz parent CTVT_variation shortLabel CTVT SNV Somatic longLabel CTVT SNV Somatic html html/CTVT priority 5.83 type vcfTabix visibility dense track CTVT_SNV_Ger bigDataUrl https://data.broadinstitute.org/vgb/dog/dog/canFam3/ostrander/CTVT_SNV_germline.vcf.gz parent CTVT_variation shortLabel CTVT SNV Germline longLabel CTVT SNV Germline html html/CTVT priority 5.84 type vcfTabix visibility dense track polyA_transcripts superTrack on group transcripts shortLabel Poly-A Txs longLabel Pre-annotation cufflinks transcript assemblies from poly-A selected libraries html html/cufflinksTranscripts priority 6 track brain parent polyA_transcripts bigDataUrl https://data.broadinstitute.org/vgb/dog/dog/canFam3/transcripts/polyA/brain.polyA.bb shortLabel Brain PolyA Txs longLabel Brain PolyA Transcripts html html/cufflinksTranscripts type bigBed 12 visibility dense priority 6.1 itemRgb on exonArrows on thickDrawItem on track heart parent polyA_transcripts bigDataUrl https://data.broadinstitute.org/vgb/dog/dog/canFam3/transcripts/polyA/heart.polyA.bb shortLabel Heart PolyA Txs longLabel Heart PolyA Transcripts html html/cufflinksTranscripts type bigBed 12 visibility dense priority 6.2 itemRgb on exonArrows on thickDrawItem on track kidney parent polyA_transcripts bigDataUrl https://data.broadinstitute.org/vgb/dog/dog/canFam3/transcripts/polyA/kidney.polyA.bb shortLabel Kidney PolyA Txs longLabel Kidney PolyA Transcripts html html/cufflinksTranscripts type bigBed 12 visibility dense priority 6.3 itemRgb on exonArrows on thickDrawItem on track liver parent polyA_transcripts bigDataUrl https://data.broadinstitute.org/vgb/dog/dog/canFam3/transcripts/polyA/liver.polyA.bb shortLabel Liver PolyA Txs longLabel Liver PolyA Transcripts html html/cufflinksTranscripts type bigBed 12 visibility dense priority 6.4 itemRgb on exonArrows on thickDrawItem on track blood parent polyA_transcripts bigDataUrl https://data.broadinstitute.org/vgb/dog/dog/canFam3/transcripts/polyA/blood.polyA.bb shortLabel Blood PolyA Txs longLabel Blood PolyA Transcripts html html/cufflinksTranscripts type bigBed 12 visibility dense priority 6.5 itemRgb on exonArrows on thickDrawItem on track ovary parent polyA_transcripts bigDataUrl https://data.broadinstitute.org/vgb/dog/dog/canFam3/transcripts/polyA/ovary.polyA.bb shortLabel Ovary PolyA Txs longLabel Ovary PolyA Transcripts html html/cufflinksTranscripts type bigBed 12 visibility dense priority 6.6 itemRgb on exonArrows on thickDrawItem on track sk_m parent polyA_transcripts bigDataUrl https://data.broadinstitute.org/vgb/dog/dog/canFam3/transcripts/polyA/sk.polyA.bb shortLabel Muscle PolyA Txs longLabel Sk. Muscle PolyA Transcripts html html/cufflinksTranscripts type bigBed 12 visibility dense priority 6.7 itemRgb on exonArrows on thickDrawItem on track skin_2 parent polyA_transcripts bigDataUrl https://data.broadinstitute.org/vgb/dog/dog/canFam3/transcripts/polyA/skin.polyA.bb shortLabel Skin PolyA Txs longLabel Skin PolyA Transcripts html html/cufflinksTranscripts type bigBed 12 visibility dense priority 6.8 itemRgb on exonArrows on thickDrawItem on track testis parent polyA_transcripts bigDataUrl https://data.broadinstitute.org/vgb/dog/dog/canFam3/transcripts/polyA/testis.polyA.bb shortLabel Testis PolyA Txs longLabel Testis PolyA Transcripts html html/cufflinksTranscripts type bigBed 12 visibility dense priority 6.9 itemRgb on exonArrows on thickDrawItem on track dsn_transcripts superTrack on group transcripts shortLabel DSN Transcripts longLabel Pre-annotation cufflinks transcript assemblies from DSN library html html/cufflinksTranscripts priority 7 track brain_dsn parent dsn_transcripts bigDataUrl https://data.broadinstitute.org/vgb/dog/dog/canFam3/transcripts/dsn/brain.dsn.bb shortLabel Brain DSN Txs longLabel Brain DSN Transcripts html html/cufflinksTranscripts type bigBed 12 visibility dense priority 7.1 itemRgb on exonArrows on thickDrawItem on track heart_dsn parent dsn_transcripts bigDataUrl https://data.broadinstitute.org/vgb/dog/dog/canFam3/transcripts/dsn/heart.dsn.bb shortLabel Heart DSN Txs longLabel Heart DSN Transcripts html html/cufflinksTranscripts type bigBed 12 visibility dense priority 7.2 itemRgb on exonArrows on thickDrawItem on track kidney_dsn parent dsn_transcripts bigDataUrl https://data.broadinstitute.org/vgb/dog/dog/canFam3/transcripts/dsn/kidney.dsn.bb shortLabel Kidney DSN Txs longLabel Kidney DSN Transcripts html html/cufflinksTranscripts type bigBed 12 visibility dense priority 7.3 itemRgb on exonArrows on thickDrawItem on track liver_dsn parent dsn_transcripts bigDataUrl https://data.broadinstitute.org/vgb/dog/dog/canFam3/transcripts/dsn/liver.dsn.bb shortLabel Liver DSN Txs longLabel Liver DSN Transcripts html html/cufflinksTranscripts type bigBed 12 visibility dense priority 7.4 itemRgb on exonArrows on thickDrawItem on track lung_dsn parent dsn_transcripts bigDataUrl https://data.broadinstitute.org/vgb/dog/dog/canFam3/transcripts/dsn/lung.dsn.bb shortLabel Lung DSN Txs longLabel Lung DSN Transcripts html html/cufflinksTranscripts type bigBed 12 visibility dense priority 7.5 itemRgb on exonArrows on thickDrawItem on track muscle_dsn parent dsn_transcripts bigDataUrl https://data.broadinstitute.org/vgb/dog/dog/canFam3/transcripts/dsn/muscle.dsn.bb shortLabel Muscle DSN Txs longLabel Muscle DSN Transcripts html html/cufflinksTranscripts type bigBed 12 visibility dense priority 7.6 itemRgb on exonArrows on thickDrawItem on track blood_dsn parent dsn_transcripts bigDataUrl https://data.broadinstitute.org/vgb/dog/dog/canFam3/transcripts/dsn/blood.dsn.bb shortLabel Blood DSN Txs longLabel Blood DSN Transcripts html html/cufflinksTranscripts type bigBed 12 visibility dense priority 7.7 itemRgb on exonArrows on thickDrawItem on track ovary_dsn parent dsn_transcripts bigDataUrl https://data.broadinstitute.org/vgb/dog/dog/canFam3/transcripts/dsn/ovary.dsn.bb shortLabel Ovary DSN Txs longLabel Ovary DSN Transcripts html html/cufflinksTranscripts type bigBed 12 visibility dense priority 7.8 itemRgb on exonArrows on thickDrawItem on track skin_dsn parent dsn_transcripts bigDataUrl https://data.broadinstitute.org/vgb/dog/dog/canFam3/transcripts/dsn/skin.dsn.bb shortLabel Skin DSN Txs longLabel Skin DSN Transcripts html html/cufflinksTranscripts type bigBed 12 visibility dense priority 7.9 itemRgb on exonArrows on thickDrawItem on track testis_dsn parent dsn_transcripts bigDataUrl https://data.broadinstitute.org/vgb/dog/dog/canFam3/transcripts/dsn/testes.dsn.bb shortLabel Testis DSN Txs longLabel Testis DSN Transcripts html html/cufflinksTranscripts type bigBed 12 visibility dense priority 7.91 itemRgb on exonArrows on thickDrawItem on track lupa_polyA_transcripts superTrack on group lupa_polyA_transcripts shortLabel LUPA Sample Txs longLabel Cufflinks transcripts derived from LUPA Sample Set html html/lupaTranscripts priority 8 track cerebellum_polyA parent lupa_polyA_transcripts bigDataUrl https://data.broadinstitute.org/vgb/dog/dog/canFam3/lupa/cerebellum.polyA.bb shortLabel Cerebellum Txs longLabel Cerebellum polyA Transcripts html html/lupaTranscripts type bigBed 12 visibility dense priority 8.01 itemRgb on exonArrows on thickDrawItem on track pancreas_polyA parent lupa_polyA_transcripts bigDataUrl https://data.broadinstitute.org/vgb/dog/dog/canFam3/lupa/pancreas.polyA.bb shortLabel Pancreas Txs longLabel Pancreas polyA Transcripts html html/lupaTranscripts type bigBed 12 visibility dense priority 8.02 itemRgb on exonArrows on thickDrawItem on track spleen_polyA parent lupa_polyA_transcripts bigDataUrl https://data.broadinstitute.org/vgb/dog/dog/canFam3/lupa/spleen.polyA.bb shortLabel Spleen Txs longLabel Spleen polyA Transcripts html html/lupaTranscripts type bigBed 12 visibility dense priority 8.03 itemRgb on exonArrows on thickDrawItem on track olfactory_bulb_polyA parent lupa_polyA_transcripts bigDataUrl https://data.broadinstitute.org/vgb/dog/dog/canFam3/lupa/olfactory_bulb.polyA.bb shortLabel Olfactory Bulb Txs longLabel Olfactory Bulb polyA Transcripts html html/lupaTranscripts type bigBed 12 visibility dense priority 8.04 itemRgb on exonArrows on thickDrawItem on track spinal_cord_polyA parent lupa_polyA_transcripts bigDataUrl https://data.broadinstitute.org/vgb/dog/dog/canFam3/lupa/spinal_cord.polyA.bb shortLabel Spinal Cord Txs longLabel Spinal Cord polyA Transcripts html html/lupaTranscripts type bigBed 12 visibility dense priority 8.05 itemRgb on exonArrows on thickDrawItem on track adrenal_gland_polyA parent lupa_polyA_transcripts bigDataUrl https://data.broadinstitute.org/vgb/dog/dog/canFam3/lupa/adrenal_gland.polyA.bb shortLabel Adrenal Gland Txs longLabel Adrenal Gland polyA Transcripts html html/lupaTranscripts type bigBed 12 visibility dense priority 8.06 itemRgb on exonArrows on thickDrawItem on track retina_polyA parent lupa_polyA_transcripts bigDataUrl https://data.broadinstitute.org/vgb/dog/dog/canFam3/lupa/retina.polyA.bb shortLabel Retina Txs longLabel Retina polyA Transcripts html html/lupaTranscripts type bigBed 12 visibility dense priority 8.07 itemRgb on exonArrows on thickDrawItem on track mammary_gland_polyA parent lupa_polyA_transcripts bigDataUrl https://data.broadinstitute.org/vgb/dog/dog/canFam3/lupa/mammary_gland.polyA.bb shortLabel Mammary Gland Txs longLabel Mammary Gland polyA Transcripts html html/lupaTranscripts type bigBed 12 visibility dense priority 8.08 itemRgb on exonArrows on thickDrawItem on track colon_polyA parent lupa_polyA_transcripts bigDataUrl https://data.broadinstitute.org/vgb/dog/dog/canFam3/lupa/colon.polyA.bb shortLabel Colon Txs longLabel Colon polyA Transcripts html html/lupaTranscripts type bigBed 12 visibility dense priority 8.09 itemRgb on exonArrows on thickDrawItem on track keratinocytes_polyA parent lupa_polyA_transcripts bigDataUrl https://data.broadinstitute.org/vgb/dog/dog/canFam3/lupa/keratinocytes.polyA.bb shortLabel Keratinocytes Txs longLabel Keratinocytes polyA Transcripts html html/lupaTranscripts type bigBed 12 visibility dense priority 8.1 itemRgb on exonArrows on thickDrawItem on track skin_polyA parent lupa_polyA_transcripts bigDataUrl https://data.broadinstitute.org/vgb/dog/dog/canFam3/lupa/skin.polyA.bb shortLabel Skin Txs longLabel Skin polyA Transcripts html html/lupaTranscripts type bigBed 12 visibility dense priority 8.11 itemRgb on exonArrows on thickDrawItem on track thymus_polyA parent lupa_polyA_transcripts bigDataUrl https://data.broadinstitute.org/vgb/dog/dog/canFam3/lupa/thymus.polyA.bb shortLabel Thymus Txs longLabel Thymus polyA Transcripts html html/lupaTranscripts type bigBed 12 visibility dense priority 8.12 itemRgb on exonArrows on thickDrawItem on track jejunum_polyA parent lupa_polyA_transcripts bigDataUrl https://data.broadinstitute.org/vgb/dog/dog/canFam3/lupa/jejunum.polyA.bb shortLabel Jejunum Txs longLabel Jejunum polyA Transcripts html html/lupaTranscripts type bigBed 12 visibility dense priority 8.13 itemRgb on exonArrows on thickDrawItem on track miRNA_expression superTrack on group miRNA_expression shortLabel miRNA Expression longLabel Expression levels for miRNAs html html/miRNA priority 5.6 track miR_blood_plus bigDataUrl https://data.broadinstitute.org/~jjohnson/dog/trackHub/canFam3/miRNA/dog_blood_mir_ALL_plus.bw parent miRNA_expression shortLabel miRNA Blood (+) longLabel miRNA exp - Blood (+) html html/miRNA type bigWig priority 5.601 track miR_blood_minus bigDataUrl https://data.broadinstitute.org/~jjohnson/dog/trackHub/canFam3/miRNA/dog_blood_mir_ALL_minus.bw parent miRNA_expression shortLabel miRNA Blood (-) longLabel miRNA exp - Blood (-) html html/miRNA type bigWig priority 5.602 track miR_brain_plus bigDataUrl https://data.broadinstitute.org/~jjohnson/dog/trackHub/canFam3/miRNA/dog_brain_mir_ALL_plus.bw parent miRNA_expression shortLabel miRNA Brain (+) longLabel miRNA exp - Brain (+) html html/miRNA type bigWig priority 5.603 track miR_brain_minus bigDataUrl https://data.broadinstitute.org/~jjohnson/dog/trackHub/canFam3/miRNA/dog_brain_mir_ALL_minus.bw parent miRNA_expression shortLabel miRNA Brain (-) longLabel miRNA exp - Brain (-) html html/miRNA type bigWig priority 5.604 track miR_heart_plus bigDataUrl https://data.broadinstitute.org/~jjohnson/dog/trackHub/canFam3/miRNA/dog_heart_mir_ALL_plus.bw parent miRNA_expression shortLabel miRNA Heart (+) longLabel miRNA exp - Heart (+) html html/miRNA type bigWig priority 5.605 track miR_heart_minus bigDataUrl https://data.broadinstitute.org/~jjohnson/dog/trackHub/canFam3/miRNA/dog_heart_mir_ALL_minus.bw parent miRNA_expression shortLabel miRNA Heart (-) longLabel miRNA exp - Heart (-) html html/miRNA type bigWig priority 5.606 track miR_kidney_plus bigDataUrl https://data.broadinstitute.org/~jjohnson/dog/trackHub/canFam3/miRNA/dog_kidney_mir_ALL_plus.bw parent miRNA_expression shortLabel miRNA Kidney (+) longLabel miRNA exp - Kidney (+) html html/miRNA type bigWig priority 5.607 track miR_kidney_minus bigDataUrl https://data.broadinstitute.org/~jjohnson/dog/trackHub/canFam3/miRNA/dog_kidney_mir_ALL_minus.bw parent miRNA_expression shortLabel miRNA Kidney (-) longLabel miRNA exp - Kidney (-) html html/miRNA type bigWig priority 5.608 track miR_lung_plus bigDataUrl https://data.broadinstitute.org/~jjohnson/dog/trackHub/canFam3/miRNA/dog_lung_mir_ALL_plus.bw parent miRNA_expression shortLabel miRNA Lung (+) longLabel miRNA exp - Lung (+) html html/miRNA type bigWig priority 5.609 track miR_lung_minus bigDataUrl https://data.broadinstitute.org/~jjohnson/dog/trackHub/canFam3/miRNA/dog_lung_mir_ALL_minus.bw parent miRNA_expression shortLabel miRNA Lung (-) longLabel miRNA exp - Lung (-) html html/miRNA type bigWig priority 5.610 track miR_ovary_plus bigDataUrl https://data.broadinstitute.org/~jjohnson/dog/trackHub/canFam3/miRNA/dog_ovary_mir_ALL_plus.bw parent miRNA_expression shortLabel miRNA Ovary (+) longLabel miRNA exp - Ovary (+) html html/miRNA type bigWig priority 5.611 track miR_ovary_minus bigDataUrl https://data.broadinstitute.org/~jjohnson/dog/trackHub/canFam3/miRNA/dog_ovary_mir_ALL_minus.bw parent miRNA_expression shortLabel miRNA Ovary (-) longLabel miRNA exp - Ovary (-) html html/miRNA type bigWig priority 5.612 track miR_skin_plus bigDataUrl https://data.broadinstitute.org/~jjohnson/dog/trackHub/canFam3/miRNA/dog_skin_mir_ALL_plus.bw parent miRNA_expression shortLabel miRNA Skin (+) longLabel miRNA exp - Skin (+) html html/miRNA type bigWig priority 5.613 track miR_skin_minus bigDataUrl https://data.broadinstitute.org/~jjohnson/dog/trackHub/canFam3/miRNA/dog_skin_mir_ALL_minus.bw parent miRNA_expression shortLabel miRNA Skin (-) longLabel miRNA exp - Skin (-) html html/miRNA type bigWig priority 5.614 track miR_smuscle_plus bigDataUrl https://data.broadinstitute.org/~jjohnson/dog/trackHub/canFam3/miRNA/dog_smuscle_mir_ALL_plus.bw parent miRNA_expression shortLabel miRNA Muscle (+) longLabel miRNA exp - Skeletal Muscle (+) html html/miRNA type bigWig priority 5.615 track miR_smuscle_minus bigDataUrl https://data.broadinstitute.org/~jjohnson/dog/trackHub/canFam3/miRNA/dog_smuscle_mir_ALL_minus.bw parent miRNA_expression shortLabel miRNA Muscle (-) longLabel miRNA exp - Skeletal Muscle (-) html html/miRNA type bigWig priority 5.616 track miR_testis_plus bigDataUrl https://data.broadinstitute.org/~jjohnson/dog/trackHub/canFam3/miRNA/dog_testis_mir_ALL_plus.bw parent miRNA_expression shortLabel miRNA Testis (+) longLabel miRNA exp - Testis (+) html html/miRNA type bigWig priority 5.617 track miR_testis_minus bigDataUrl https://data.broadinstitute.org/~jjohnson/dog/trackHub/canFam3/miRNA/dog_testis_mir_ALL_minus.bw parent miRNA_expression shortLabel miRNA Testis (-) longLabel miRNA exp - Testis (-) html html/miRNA type bigWig priority 5.618