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500K_AFFYQC_GLOBAL,i500K_AFFY_FP_GLOBAL_REV2_1__FPGLOBAL_POOL00015,i500K_AFFY_FP_SD_042606_5_ 1 100316589 rs2307130 A G 0.405653 InfiniumFP3_Final_GLOBAL 1 150940625 rs267738 T G 0.067034 GLOBAL_Affy_EXFP3 1 151372138 rs7172 G A 0.46619 GLOBAL_Affy_EXFP3 1 156206121 rs1052067 G A 0.16015 GLOBAL_Affy_EXFP3 1 230845794 rs699 A G 0.740233 SQNM_CARe_iSelect_FingerprintAssays 2 4135981 rs1024026 C T 0.355649 InfiniumFP3_Final_GLOBAL 2 7540695 rs2163257 C G 0.597338 i500K_AFFY_FP_GLOBAL_REV2_1__FPGLOBAL_POOL00015,i500K_AFFY_FP_SD_042606_5_ 2 8178735 rs1364054 A G 0.437188 SQNM_1CHIP_FingerprintAssays,SQNM_1CHIP_on_affy 2 12790328 rs1000053 C T 0.133001 ILMN_OMNI_FP 2 15678482 rs2380657 T C 0.38255 A1GLOBAL_100K_AFFYFP_4pools,i100K_AFFY_FP_SD_GLOBAL 2 20838318 rs3796064 G A 0.345802 GLOBAL_Affy_EXFP3 2 27351279 rs1866561 G A 0.619683 InfiniumFP3_Final_GLOBAL 2 65200618 rs4671636 C A 0.488255 500K_AFFYQC_GLOBAL 2 67241174 rs6734275 G A 0.447215 AffyBchipRe-Repool_3_,SQNM_1CHIP_FingerprintAssays,SQNM_1CHIP_on_affy,SQNM_FP_BCHIP_500K_GLOBAL 2 79422965 rs1434199 C G 0.642617 A1GLOBAL_100K_AFFYFP_4pools,i100K_AFFY_FP_SD_GLOBAL 2 98274527 rs1042705 G C 0.601949 GLOBAL_Affy_EXFP3 2 147596973 rs4411641 A G 0.541563 500K_AFFYQC_GLOBAL,InfiniumFP3_Final_GLOBAL,i500K_AFFY_FP_GLOBAL_REV2_1__FPGLOBAL_POOL00015,i500K_AFFY_FP_SD_042606_5_ 2 161797513 rs1524625 A G 0.558652 i500K_AFFY_FP_GLOBAL_REV2_1__FPGLOBAL_POOL00015,i500K_AFFY_FP_SD_042606_5_ 2 223845942 rs7584993 C A 0.605985 AffyBchipRe-Repool_3_,SQNM_1CHIP_FingerprintAssays,SQNM_1CHIP_on_affy,SQNM_FP_BCHIP_500K_GLOBAL 3 12393125 rs1801282 C G 0.056025 SQNM_CARe_iSelect_FingerprintAssays 3 17077268 rs17272796 C T 0.623026 AffyBchipRe-Repool_3_,SQNM_1CHIP_FingerprintAssays,SQNM_1CHIP_on_affy,SQNM_FP_BCHIP_500K_GLOBAL 3 37627112 rs1155741 T C 0.74 AffyBchipRe-Repool_3_,SQNM_1CHIP_FingerprintAssays,SQNM_1CHIP_on_affy,SQNM_FP_BCHIP_500K_GLOBAL 3 60898109 rs9821525 T C 0.439318 3 60898434 rs11130795 T C 0.440417 rs9821525 500K_AFFYQC_GLOBAL,i500K_AFFY_FP_GLOBAL_REV2_1__FPGLOBAL_POOL00015,i500K_AFFY_FP_SD_042606_5_ 3 123378534 rs39639 C G 0.468386 500K_AFFYQC_GLOBAL,i500K_AFFY_FP_GLOBAL_REV2_1__FPGLOBAL_POOL00015,i500K_AFFY_FP_SD_042606_5_ 3 148727133 rs4938 G A 0.292429 GLOBAL_Affy_EXFP3 3 151899704 rs161792 T A 0.722731 AffyBchipRe-Repool_3_,SQNM_1CHIP_FingerprintAssays,SQNM_1CHIP_on_affy,SQNM_FP_BCHIP_500K_GLOBAL 3 171041055 rs10513695 T G 0.302161 ILMN_OMNI_FP 3 179322385 rs2339844 A C 0.116959 GLOBAL_Affy_EXFP3 4 23815662 rs8192678 C T 0.259167 SQNM_CARe_iSelect_FingerprintAssays 4 27162478 rs11940551 T G 0.205686 SQNM_1CHIP_FingerprintAssays,SQNM_1CHIP_on_affy 4 42639186 rs898500 A G 0.502078 ILMN_OMNI_FP,InfiniumFP3_Final_GLOBAL 4 57194525 rs6834736 C G 0.512884 500K_AFFYQC_GLOBAL,i500K_AFFY_FP_GLOBAL_REV2_1__FPGLOBAL_POOL00015,i500K_AFFY_FP_SD_042606_5_ 4 73615956 rs1350836 C T 0.352868 A1GLOBAL_100K_AFFYFP_4pools,i100K_AFFY_FP_SD_GLOBAL 4 185999543 rs6841061 G A 0.566722 500K_AFFYQC_GLOBAL,i500K_AFFY_FP_GLOBAL_REV2_1__FPGLOBAL_POOL00015,i500K_AFFY_FP_SD_042606_5_ 5 57617403 rs37535 G C 0.566556 500K_AFFYQC_GLOBAL,i500K_AFFY_FP_GLOBAL_REV2_1__FPGLOBAL_POOL00015,i500K_AFFY_FP_SD_042606_5_ 5 79172136 rs265005 A G 0.204489 A1GLOBAL_100K_AFFYFP_4pools,i100K_AFFY_FP_SD_GLOBAL 5 82837631 rs160277 G T 0.349709 InfiniumFP3_Final_GLOBAL 5 88416354 rs9293511 C T 0.558528 AffyBchipRe-Repool_3_,SQNM_1CHIP_FingerprintAssays,SQNM_1CHIP_on_affy,SQNM_FP_BCHIP_500K_GLOBAL 5 142779317 rs6195 T C 0.01467 SQNM_CARe_iSelect_FingerprintAssays 5 148206440 rs1042713 G A 0.487927 SQNM_CARe_iSelect_FingerprintAssays 5 148206473 rs1042714 G C 0.810403 SQNM_CARe_iSelect_FingerprintAssays 5 156355375 rs2862058 A G 0.349127 AffyBchipRe-Repool_3_,SQNM_FP_BCHIP_500K_GLOBAL 6 8378609 rs10484750 T C 0.288574 ILMN_OMNI_FP 6 12165363 rs219950 C T 0.31568 InfiniumFP3_Final_GLOBAL 6 19875846 rs1028330 G A 0.428928 A1GLOBAL_100K_AFFYFP_4pools,i100K_AFFY_FP_SD_GLOBAL 6 31543031 rs1800629 G A 0.0798 SQNM_CARe_iSelect_FingerprintAssays 6 43020188 rs4711738 G A 0.32128 GLOBAL_Affy_EXFP3 6 65525121 rs1390272 C T 0.411056 A1GLOBAL_100K_AFFYFP_4pools,i100K_AFFY_FP_SD_GLOBAL 6 79424433 rs9352613 A G 0.256803 SQNM_1CHIP_FingerprintAssays,SQNM_1CHIP_on_affy 6 109982160 rs2016207 C T 0.696309 A1GLOBAL_100K_AFFYFP_4pools,i100K_AFFY_FP_SD_GLOBAL 6 127066190 rs853971 T C 0.509695 500K_AFFYQC_GLOBAL 6 132172368 rs1044498 A C 0.400417 SQNM_CARe_iSelect_FingerprintAssays 6 149721690 rs237025 G A 0.683181 GLOBAL_Affy_EXFP3 6 153344531 rs685449 T A 0.452579 AffyBchipRe-Repool_3_,SQNM_1CHIP_FingerprintAssays,SQNM_1CHIP_on_affy,SQNM_FP_BCHIP_500K_GLOBAL 6 156275691 rs4870405 G T 0.450915 i500K_AFFY_FP_GLOBAL_REV2_1__FPGLOBAL_POOL00015,i500K_AFFY_FP_SD_042606_5_ 7 4490854 rs314605 C T 0.786367 AffyBchipRe-Repool_3_,SQNM_FP_BCHIP_500K_GLOBAL 7 6063283 rs4560 C T 0.355121 GLOBAL_Affy_EXFP3 7 11579793 rs10242744 G A 0.302161 ILMN_OMNI_FP 7 44612229 rs2289057 G A 0.1533 GLOBAL_Affy_EXFP3 7 86983715 rs7808249 A G 0.662917 AffyBchipRe-Repool_3_,SQNM_1CHIP_FingerprintAssays,SQNM_1CHIP_on_affy,SQNM_FP_BCHIP_500K_GLOBAL 8 2112130 rs1036689 G A 0.310889 ILMN_OMNI_FP 8 16907125 rs2014286 G A 0.490017 500K_AFFYQC_GLOBAL,InfiniumFP3_Final_GLOBAL,i500K_AFFY_FP_GLOBAL_REV2_1__FPGLOBAL_POOL00015,i500K_AFFY_FP_SD_042606_5_ 8 19819724 rs328 C G 0.102349 SQNM_CARe_iSelect_FingerprintAssays 8 37823798 rs4994 A G 0.110233 SQNM_CARe_iSelect_FingerprintAssays 8 62003453 rs1367972 A G 0.551538 500K_AFFYQC_GLOBAL,InfiniumFP3_Final_GLOBAL,i500K_AFFY_FP_GLOBAL_REV2_1__FPGLOBAL_POOL00015,i500K_AFFY_FP_SD_042606_5_ 8 71012811 rs1106334 A G 0.392887 AffyBchipRe-Repool_3_,SQNM_1CHIP_FingerprintAssays,SQNM_1CHIP_on_affy,SQNM_FP_BCHIP_500K_GLOBAL 8 141461062 rs3735803 G A 0.475829 GLOBAL_Affy_EXFP3 9 90062823 rs12682834 A G 0.617623 500K_AFFYQC_GLOBAL,i500K_AFFY_FP_GLOBAL_REV2_1__FPGLOBAL_POOL00015,i500K_AFFY_FP_SD_042606_5_ 9 117908721 rs1000110 C T 0.455882 ILMN_OMNI_FP 9 127915947 rs2271746 G A 0.052632 GLOBAL_Affy_EXFP3 10 3202065 rs4242746 T C 0.631864 GLOBAL_Affy_EXFP3 10 6001696 rs3136618 C T 0.509144 InfiniumFP3_Final_GLOBAL 10 29932918 rs2488689 G A 0.474937 500K_AFFYQC_GLOBAL,i500K_AFFY_FP_GLOBAL_REV2_1__FPGLOBAL_POOL00015,i500K_AFFY_FP_SD_042606_5_ 10 75632760 rs2675671 C T 0.26143 GLOBAL_Affy_EXFP3 10 97137105 rs1536556 A G 0.415628 InfiniumFP3_Final_GLOBAL 10 102104521 rs735877 C T 0.474853 InfiniumFP3_Final_GLOBAL 10 125673547 rs4329614 T G 0.478768 500K_AFFYQC_GLOBAL 10 129200964 rs11017876 G A 0.228188 AffyBchipRe-Repool_3_,SQNM_1CHIP_FingerprintAssays,SQNM_1CHIP_on_affy,SQNM_FP_BCHIP_500K_GLOBAL 10 129652787 rs1000797 G A 0.154742 ILMN_OMNI_FP 11 4185595 rs979942 T G 0.435578 InfiniumFP3_Final_GLOBAL 11 4562947 rs2641414 G T 0.371464 AffyBchipRe-Repool_3_,SQNM_FP_BCHIP_500K_GLOBAL 11 14246296 rs1025412 G A 0.561018 500K_AFFYQC_GLOBAL,ILMN_OMNI_FP,InfiniumFP3_Final_GLOBAL,i500K_AFFY_FP_GLOBAL_REV2_1__FPGLOBAL_POOL00015,i500K_AFFY_FP_SD_042606_5_ 11 110697305 rs120434 C G 0.46675 A1GLOBAL_100K_AFFYFP_4pools,i100K_AFFY_FP_SD_GLOBAL 12 12967127 rs1051374 C T 0.379468 GLOBAL_Affy_EXFP3 12 47761212 rs58616 G A 0.355417 A1GLOBAL_100K_AFFYFP_4pools,i100K_AFFY_FP_SD_GLOBAL 12 68195095 rs10748087 C G 0.479149 500K_AFFYQC_GLOBAL,i500K_AFFY_FP_SD_042606_5_ 12 97639144 rs1012315 A G 0.566667 ILMN_OMNI_FP,InfiniumFP3_Final_GLOBAL 12 103298517 rs1522307 A G 0.458403 A1GLOBAL_100K_AFFYFP_4pools,i100K_AFFY_FP_SD_GLOBAL 13 35252882 rs9572094 T C 0.425957 AffyBchipRe-Repool_3_,SQNM_1CHIP_FingerprintAssays,SQNM_1CHIP_on_affy,SQNM_FP_BCHIP_500K_GLOBAL 13 37804353 rs1408229 A C 0.533666 500K_AFFYQC_GLOBAL,i500K_AFFY_FP_GLOBAL_REV2_1__FPGLOBAL_POOL00015,i500K_AFFY_FP_SD_042606_5_ 13 45090478 rs1336163 A C 0.409583 InfiniumFP3_Final_GLOBAL 13 48671081 rs1571256 A G 0.424709 A1GLOBAL_100K_AFFYFP_4pools,ILMN_OMNI_FP,i100K_AFFY_FP_SD_GLOBAL 13 54615364 rs17089192 A C 0.180532 AffyBchipRe-Repool_3_,SQNM_FP_BCHIP_500K_GLOBAL 13 79766188 rs2988039 A G 0.560316 i500K_AFFY_FP_GLOBAL_REV2_1__FPGLOBAL_POOL00015 13 83597934 rs2639486 A T 0.570657 i500K_AFFY_FP_GLOBAL_REV2_1__FPGLOBAL_POOL00015,i500K_AFFY_FP_SD_042606_5_ 13 113773159 rs6046 G A 0.137946 SQNM_CARe_iSelect_FingerprintAssays 14 24806800 rs1950501 G C 0.427621 A1GLOBAL_100K_AFFYFP_4pools,i100K_AFFY_FP_SD_GLOBAL 14 32438484 rs1952966 G A 0.531198 A1GLOBAL_100K_AFFYFP_4pools,i100K_AFFY_FP_SD_GLOBAL 14 40896108 rs1000203 T C 0.103139 ILMN_OMNI_FP 14 61643045 rs4902033 C A 0.448376 AffyBchipRe-Repool_3_,SQNM_FP_BCHIP_500K_GLOBAL 14 68773353 rs2180770 G A 0.392491 A1GLOBAL_100K_AFFYFP_4pools,i100K_AFFY_FP_SD_GLOBAL 14 71050892 rs11158867 A G 0.547382 500K_AFFYQC_GLOBAL,i500K_AFFY_FP_GLOBAL_REV2_1__FPGLOBAL_POOL00015,i500K_AFFY_FP_SD_042606_5_ 14 73138189 rs1060570 C A 0.491681 InfiniumFP3_Final_GLOBAL 14 96103099 rs4905366 A G 0.376667 AffyBchipRe-Repool_3_,SQNM_1CHIP_FingerprintAssays,SQNM_1CHIP_on_affy,SQNM_FP_BCHIP_500K_GLOBAL 14 102568367 rs8005905 T A 0.740989 GLOBAL_Affy_EXFP3 14 105478102 rs3803294 G A 0.313333 GLOBAL_Affy_EXFP3 15 27890491 rs1871017 G T 0.574459 InfiniumFP3_Final_GLOBAL 15 37026565 rs1037439 A G 0.302083 ILMN_OMNI_FP 15 47873549 rs4775699 C T 0.296296 AffyBchipRe-Repool_3_,SQNM_1CHIP_FingerprintAssays,SQNM_1CHIP_on_affy,SQNM_FP_BCHIP_500K_GLOBAL 15 58723675 rs1800588 C T 0.451342 SQNM_CARe_iSelect_FingerprintAssays 15 93844762 rs12909691 C T 0.445878 500K_AFFYQC_GLOBAL,i500K_AFFY_FP_GLOBAL_REV2_1__FPGLOBAL_POOL00015,i500K_AFFY_FP_SD_042606_5_ 16 3811556 rs886528 A G 0.450337 InfiniumFP3_Final_GLOBAL 16 6747139 rs1000192 G A 0.06167 ILMN_OMNI_FP 16 51098427 rs1528601 G C 0.547421 AffyBchipRe-Repool_3_,SQNM_1CHIP_FingerprintAssays,SQNM_1CHIP_on_affy,SQNM_FP_BCHIP_500K_GLOBAL 16 56994528 rs17231506 C T 0.183566 SQNM_CARe_iSelect_FingerprintAssays 16 56994894 rs4783961 G A 0.399418 SQNM_CARe_iSelect_FingerprintAssays 16 56995236 rs1800775 C A 0.55059 SQNM_CARe_iSelect_FingerprintAssays 16 57786711 rs2965798 C T 0.386345 GLOBAL_Affy_EXFP3 16 58743454 rs30842 A C 0.779633 GLOBAL_Affy_EXFP3 16 75281964 rs1862737 A C 0.505828 InfiniumFP3_Final_GLOBAL 16 81816733 rs8045964 C T 0.392263 500K_AFFYQC_GLOBAL,i500K_AFFY_FP_GLOBAL_REV2_1__FPGLOBAL_POOL00015,i500K_AFFY_FP_SD_042606_5_ 17 20851735 rs11655512 A G 0.175 SQNM_1CHIP_FingerprintAssays,SQNM_1CHIP_on_affy 17 43131480 rs4793172 A T 0.628333 SQNM_1CHIP_FingerprintAssays,SQNM_1CHIP_on_affy 17 49567749 rs12603818 T C 0.449495 500K_AFFYQC_GLOBAL 17 61550529 rs1800764 C T 0.407423 SQNM_CARe_iSelect_FingerprintAssays 17 72780491 rs10775365 G A 0.309068 ILMN_OMNI_FP 18 4005122 rs1000929 T C 0.202749 ILMN_OMNI_FP 18 41559321 rs7229587 C G 0.708819 AffyBchipRe-Repool_3_,SQNM_FP_BCHIP_500K_GLOBAL 18 51705700 rs656306 C A 0.531513 A1GLOBAL_100K_AFFYFP_4pools,i100K_AFFY_FP_SD_GLOBAL 18 58039276 rs2229616 C T 0.02531 SQNM_CARe_iSelect_FingerprintAssays 19 29567134 rs1549944 T C 0.514559 A1GLOBAL_100K_AFFYFP_4pools,i100K_AFFY_FP_SD_GLOBAL 19 38872778 rs1131182 C T 0.087275 GLOBAL_Affy_EXFP3 19 58774071 rs260462 A G 0.538847 InfiniumFP3_Final_GLOBAL 20 5261132 rs6038115 G A 0.609492 500K_AFFYQC_GLOBAL,i500K_AFFY_FP_GLOBAL_REV2_1__FPGLOBAL_POOL00015,i500K_AFFY_FP_SD_042606_5_ 20 16223957 rs1000121 T C 0.437448 ILMN_OMNI_FP 20 36599904 rs1000158 G A 0.210067 ILMN_OMNI_FP 20 48301146 rs6512586 G A 0.428214 500K_AFFYQC_GLOBAL,InfiniumFP3_Final_GLOBAL,i500K_AFFY_FP_GLOBAL_REV2_1__FPGLOBAL_POOL00015,i500K_AFFY_FP_SD_042606_5_ 21 34433051 rs1000005 G C 0.544057 ILMN_OMNI_FP 21 38934599 rs1000026 C T 0.449324 ILMN_OMNI_FP 22 19678655 rs1015939 C T 0.298658 ILMN_OMNI_FP 22 29414001 rs2347790 A G 0.404821 A1GLOBAL_100K_AFFYFP_4pools,i100K_AFFY_FP_SD_GLOBAL 22 33229830 rs242076 A G 0.554863 ILMN_OMNI_FP,SQNM_1CHIP_FingerprintAssays,SQNM_1CHIP_on_affy X 320580 rs6603251 T C 0.706 AffyBchipRe-Repool_3_,SQNM_1CHIP_FingerprintAssays,SQNM_1CHIP_on_affy,SQNM_FP_BCHIP_500K_GLOBAL