@HD VN:1.4 GO:none SO:coordinate @SQ SN:1 LN:249250621 AS:GRCh37 UR:http://www.broadinstitute.org/ftp/pub/seq/references/Homo_sapiens_assembly19.fasta M5:1b22b98cdeb4a9304cb5d48026a85128 SP:Homo Sapiens @SQ SN:2 LN:243199373 AS:GRCh37 UR:http://www.broadinstitute.org/ftp/pub/seq/references/Homo_sapiens_assembly19.fasta M5:a0d9851da00400dec1098a9255ac712e SP:Homo Sapiens @SQ SN:3 LN:198022430 AS:GRCh37 UR:http://www.broadinstitute.org/ftp/pub/seq/references/Homo_sapiens_assembly19.fasta M5:fdfd811849cc2fadebc929bb925902e5 SP:Homo Sapiens @SQ SN:4 LN:191154276 AS:GRCh37 UR:http://www.broadinstitute.org/ftp/pub/seq/references/Homo_sapiens_assembly19.fasta M5:23dccd106897542ad87d2765d28a19a1 SP:Homo Sapiens @SQ SN:5 LN:180915260 AS:GRCh37 UR:http://www.broadinstitute.org/ftp/pub/seq/references/Homo_sapiens_assembly19.fasta M5:0740173db9ffd264d728f32784845cd7 SP:Homo Sapiens @SQ SN:6 LN:171115067 AS:GRCh37 UR:http://www.broadinstitute.org/ftp/pub/seq/references/Homo_sapiens_assembly19.fasta M5:1d3a93a248d92a729ee764823acbbc6b SP:Homo Sapiens @SQ SN:7 LN:159138663 AS:GRCh37 UR:http://www.broadinstitute.org/ftp/pub/seq/references/Homo_sapiens_assembly19.fasta M5:618366e953d6aaad97dbe4777c29375e SP:Homo Sapiens @SQ SN:8 LN:146364022 AS:GRCh37 UR:http://www.broadinstitute.org/ftp/pub/seq/references/Homo_sapiens_assembly19.fasta M5:96f514a9929e410c6651697bded59aec SP:Homo Sapiens @SQ SN:9 LN:141213431 AS:GRCh37 UR:http://www.broadinstitute.org/ftp/pub/seq/references/Homo_sapiens_assembly19.fasta M5:3e273117f15e0a400f01055d9f393768 SP:Homo Sapiens @SQ SN:10 LN:135534747 AS:GRCh37 UR:http://www.broadinstitute.org/ftp/pub/seq/references/Homo_sapiens_assembly19.fasta M5:988c28e000e84c26d552359af1ea2e1d SP:Homo Sapiens @SQ SN:11 LN:135006516 AS:GRCh37 UR:http://www.broadinstitute.org/ftp/pub/seq/references/Homo_sapiens_assembly19.fasta M5:98c59049a2df285c76ffb1c6db8f8b96 SP:Homo Sapiens @SQ SN:12 LN:133851895 AS:GRCh37 UR:http://www.broadinstitute.org/ftp/pub/seq/references/Homo_sapiens_assembly19.fasta M5:51851ac0e1a115847ad36449b0015864 SP:Homo Sapiens @SQ SN:13 LN:115169878 AS:GRCh37 UR:http://www.broadinstitute.org/ftp/pub/seq/references/Homo_sapiens_assembly19.fasta M5:283f8d7892baa81b510a015719ca7b0b SP:Homo Sapiens @SQ SN:14 LN:107349540 AS:GRCh37 UR:http://www.broadinstitute.org/ftp/pub/seq/references/Homo_sapiens_assembly19.fasta M5:98f3cae32b2a2e9524bc19813927542e SP:Homo Sapiens @SQ SN:15 LN:102531392 AS:GRCh37 UR:http://www.broadinstitute.org/ftp/pub/seq/references/Homo_sapiens_assembly19.fasta M5:e5645a794a8238215b2cd77acb95a078 SP:Homo Sapiens @SQ SN:16 LN:90354753 AS:GRCh37 UR:http://www.broadinstitute.org/ftp/pub/seq/references/Homo_sapiens_assembly19.fasta M5:fc9b1a7b42b97a864f56b348b06095e6 SP:Homo Sapiens @SQ SN:17 LN:81195210 AS:GRCh37 UR:http://www.broadinstitute.org/ftp/pub/seq/references/Homo_sapiens_assembly19.fasta M5:351f64d4f4f9ddd45b35336ad97aa6de SP:Homo Sapiens @SQ SN:18 LN:78077248 AS:GRCh37 UR:http://www.broadinstitute.org/ftp/pub/seq/references/Homo_sapiens_assembly19.fasta M5:b15d4b2d29dde9d3e4f93d1d0f2cbc9c SP:Homo Sapiens @SQ SN:19 LN:59128983 AS:GRCh37 UR:http://www.broadinstitute.org/ftp/pub/seq/references/Homo_sapiens_assembly19.fasta M5:1aacd71f30db8e561810913e0b72636d SP:Homo Sapiens @SQ SN:20 LN:63025520 AS:GRCh37 UR:http://www.broadinstitute.org/ftp/pub/seq/references/Homo_sapiens_assembly19.fasta M5:0dec9660ec1efaaf33281c0d5ea2560f SP:Homo Sapiens @SQ SN:21 LN:48129895 AS:GRCh37 UR:http://www.broadinstitute.org/ftp/pub/seq/references/Homo_sapiens_assembly19.fasta M5:2979a6085bfe28e3ad6f552f361ed74d SP:Homo Sapiens @SQ SN:22 LN:51304566 AS:GRCh37 UR:http://www.broadinstitute.org/ftp/pub/seq/references/Homo_sapiens_assembly19.fasta M5:a718acaa6135fdca8357d5bfe94211dd SP:Homo Sapiens @SQ SN:X LN:155270560 AS:GRCh37 UR:http://www.broadinstitute.org/ftp/pub/seq/references/Homo_sapiens_assembly19.fasta M5:7e0e2e580297b7764e31dbc80c2540dd SP:Homo Sapiens @SQ SN:Y LN:59373566 AS:GRCh37 UR:http://www.broadinstitute.org/ftp/pub/seq/references/Homo_sapiens_assembly19.fasta M5:1fa3474750af0948bdf97d5a0ee52e51 SP:Homo Sapiens @SQ SN:MT LN:16569 AS:GRCh37 UR:http://www.broadinstitute.org/ftp/pub/seq/references/Homo_sapiens_assembly19.fasta M5:c68f52674c9fb33aef52dcf399755519 SP:Homo Sapiens @SQ SN:GL000207.1 LN:4262 AS:GRCh37 UR:http://www.broadinstitute.org/ftp/pub/seq/references/Homo_sapiens_assembly19.fasta M5:f3814841f1939d3ca19072d9e89f3fd7 SP:Homo Sapiens @SQ SN:GL000226.1 LN:15008 AS:GRCh37 UR:http://www.broadinstitute.org/ftp/pub/seq/references/Homo_sapiens_assembly19.fasta M5:1c1b2cd1fccbc0a99b6a447fa24d1504 SP:Homo Sapiens @SQ SN:GL000229.1 LN:19913 AS:GRCh37 UR:http://www.broadinstitute.org/ftp/pub/seq/references/Homo_sapiens_assembly19.fasta M5:d0f40ec87de311d8e715b52e4c7062e1 SP:Homo Sapiens @SQ SN:GL000231.1 LN:27386 AS:GRCh37 UR:http://www.broadinstitute.org/ftp/pub/seq/references/Homo_sapiens_assembly19.fasta M5:ba8882ce3a1efa2080e5d29b956568a4 SP:Homo Sapiens @SQ SN:GL000210.1 LN:27682 AS:GRCh37 UR:http://www.broadinstitute.org/ftp/pub/seq/references/Homo_sapiens_assembly19.fasta M5:851106a74238044126131ce2a8e5847c SP:Homo Sapiens @SQ SN:GL000239.1 LN:33824 AS:GRCh37 UR:http://www.broadinstitute.org/ftp/pub/seq/references/Homo_sapiens_assembly19.fasta M5:99795f15702caec4fa1c4e15f8a29c07 SP:Homo Sapiens @SQ SN:GL000235.1 LN:34474 AS:GRCh37 UR:http://www.broadinstitute.org/ftp/pub/seq/references/Homo_sapiens_assembly19.fasta M5:118a25ca210cfbcdfb6c2ebb249f9680 SP:Homo Sapiens @SQ SN:GL000201.1 LN:36148 AS:GRCh37 UR:http://www.broadinstitute.org/ftp/pub/seq/references/Homo_sapiens_assembly19.fasta M5:dfb7e7ec60ffdcb85cb359ea28454ee9 SP:Homo Sapiens @SQ SN:GL000247.1 LN:36422 AS:GRCh37 UR:http://www.broadinstitute.org/ftp/pub/seq/references/Homo_sapiens_assembly19.fasta M5:7de00226bb7df1c57276ca6baabafd15 SP:Homo Sapiens @SQ SN:GL000245.1 LN:36651 AS:GRCh37 UR:http://www.broadinstitute.org/ftp/pub/seq/references/Homo_sapiens_assembly19.fasta M5:89bc61960f37d94abf0df2d481ada0ec SP:Homo Sapiens @SQ SN:GL000197.1 LN:37175 AS:GRCh37 UR:http://www.broadinstitute.org/ftp/pub/seq/references/Homo_sapiens_assembly19.fasta M5:6f5efdd36643a9b8c8ccad6f2f1edc7b SP:Homo Sapiens @SQ SN:GL000203.1 LN:37498 AS:GRCh37 UR:http://www.broadinstitute.org/ftp/pub/seq/references/Homo_sapiens_assembly19.fasta M5:96358c325fe0e70bee73436e8bb14dbd SP:Homo Sapiens @SQ SN:GL000246.1 LN:38154 AS:GRCh37 UR:http://www.broadinstitute.org/ftp/pub/seq/references/Homo_sapiens_assembly19.fasta M5:e4afcd31912af9d9c2546acf1cb23af2 SP:Homo Sapiens @SQ SN:GL000249.1 LN:38502 AS:GRCh37 UR:http://www.broadinstitute.org/ftp/pub/seq/references/Homo_sapiens_assembly19.fasta M5:1d78abec37c15fe29a275eb08d5af236 SP:Homo Sapiens @SQ SN:GL000196.1 LN:38914 AS:GRCh37 UR:http://www.broadinstitute.org/ftp/pub/seq/references/Homo_sapiens_assembly19.fasta M5:d92206d1bb4c3b4019c43c0875c06dc0 SP:Homo Sapiens @SQ SN:GL000248.1 LN:39786 AS:GRCh37 UR:http://www.broadinstitute.org/ftp/pub/seq/references/Homo_sapiens_assembly19.fasta M5:5a8e43bec9be36c7b49c84d585107776 SP:Homo Sapiens @SQ SN:GL000244.1 LN:39929 AS:GRCh37 UR:http://www.broadinstitute.org/ftp/pub/seq/references/Homo_sapiens_assembly19.fasta M5:0996b4475f353ca98bacb756ac479140 SP:Homo Sapiens @SQ SN:GL000238.1 LN:39939 AS:GRCh37 UR:http://www.broadinstitute.org/ftp/pub/seq/references/Homo_sapiens_assembly19.fasta M5:131b1efc3270cc838686b54e7c34b17b SP:Homo Sapiens @SQ SN:GL000202.1 LN:40103 AS:GRCh37 UR:http://www.broadinstitute.org/ftp/pub/seq/references/Homo_sapiens_assembly19.fasta M5:06cbf126247d89664a4faebad130fe9c SP:Homo Sapiens @SQ SN:GL000234.1 LN:40531 AS:GRCh37 UR:http://www.broadinstitute.org/ftp/pub/seq/references/Homo_sapiens_assembly19.fasta M5:93f998536b61a56fd0ff47322a911d4b SP:Homo Sapiens @SQ SN:GL000232.1 LN:40652 AS:GRCh37 UR:http://www.broadinstitute.org/ftp/pub/seq/references/Homo_sapiens_assembly19.fasta M5:3e06b6741061ad93a8587531307057d8 SP:Homo Sapiens @SQ SN:GL000206.1 LN:41001 AS:GRCh37 UR:http://www.broadinstitute.org/ftp/pub/seq/references/Homo_sapiens_assembly19.fasta M5:43f69e423533e948bfae5ce1d45bd3f1 SP:Homo Sapiens @SQ SN:GL000240.1 LN:41933 AS:GRCh37 UR:http://www.broadinstitute.org/ftp/pub/seq/references/Homo_sapiens_assembly19.fasta M5:445a86173da9f237d7bcf41c6cb8cc62 SP:Homo Sapiens @SQ SN:GL000236.1 LN:41934 AS:GRCh37 UR:http://www.broadinstitute.org/ftp/pub/seq/references/Homo_sapiens_assembly19.fasta M5:fdcd739913efa1fdc64b6c0cd7016779 SP:Homo Sapiens @SQ SN:GL000241.1 LN:42152 AS:GRCh37 UR:http://www.broadinstitute.org/ftp/pub/seq/references/Homo_sapiens_assembly19.fasta M5:ef4258cdc5a45c206cea8fc3e1d858cf SP:Homo Sapiens @SQ SN:GL000243.1 LN:43341 AS:GRCh37 UR:http://www.broadinstitute.org/ftp/pub/seq/references/Homo_sapiens_assembly19.fasta M5:cc34279a7e353136741c9fce79bc4396 SP:Homo Sapiens @SQ SN:GL000242.1 LN:43523 AS:GRCh37 UR:http://www.broadinstitute.org/ftp/pub/seq/references/Homo_sapiens_assembly19.fasta M5:2f8694fc47576bc81b5fe9e7de0ba49e SP:Homo Sapiens @SQ SN:GL000230.1 LN:43691 AS:GRCh37 UR:http://www.broadinstitute.org/ftp/pub/seq/references/Homo_sapiens_assembly19.fasta M5:b4eb71ee878d3706246b7c1dbef69299 SP:Homo Sapiens @SQ SN:GL000237.1 LN:45867 AS:GRCh37 UR:http://www.broadinstitute.org/ftp/pub/seq/references/Homo_sapiens_assembly19.fasta M5:e0c82e7751df73f4f6d0ed30cdc853c0 SP:Homo Sapiens @SQ SN:GL000233.1 LN:45941 AS:GRCh37 UR:http://www.broadinstitute.org/ftp/pub/seq/references/Homo_sapiens_assembly19.fasta M5:7fed60298a8d62ff808b74b6ce820001 SP:Homo Sapiens @SQ SN:GL000204.1 LN:81310 AS:GRCh37 UR:http://www.broadinstitute.org/ftp/pub/seq/references/Homo_sapiens_assembly19.fasta M5:efc49c871536fa8d79cb0a06fa739722 SP:Homo Sapiens @SQ SN:GL000198.1 LN:90085 AS:GRCh37 UR:http://www.broadinstitute.org/ftp/pub/seq/references/Homo_sapiens_assembly19.fasta M5:868e7784040da90d900d2d1b667a1383 SP:Homo Sapiens @SQ SN:GL000208.1 LN:92689 AS:GRCh37 UR:http://www.broadinstitute.org/ftp/pub/seq/references/Homo_sapiens_assembly19.fasta M5:aa81be49bf3fe63a79bdc6a6f279abf6 SP:Homo Sapiens @SQ SN:GL000191.1 LN:106433 AS:GRCh37 UR:http://www.broadinstitute.org/ftp/pub/seq/references/Homo_sapiens_assembly19.fasta M5:d75b436f50a8214ee9c2a51d30b2c2cc SP:Homo Sapiens @SQ SN:GL000227.1 LN:128374 AS:GRCh37 UR:http://www.broadinstitute.org/ftp/pub/seq/references/Homo_sapiens_assembly19.fasta M5:a4aead23f8053f2655e468bcc6ecdceb SP:Homo Sapiens @SQ SN:GL000228.1 LN:129120 AS:GRCh37 UR:http://www.broadinstitute.org/ftp/pub/seq/references/Homo_sapiens_assembly19.fasta M5:c5a17c97e2c1a0b6a9cc5a6b064b714f SP:Homo Sapiens @SQ SN:GL000214.1 LN:137718 AS:GRCh37 UR:http://www.broadinstitute.org/ftp/pub/seq/references/Homo_sapiens_assembly19.fasta M5:46c2032c37f2ed899eb41c0473319a69 SP:Homo Sapiens @SQ SN:GL000221.1 LN:155397 AS:GRCh37 UR:http://www.broadinstitute.org/ftp/pub/seq/references/Homo_sapiens_assembly19.fasta M5:3238fb74ea87ae857f9c7508d315babb SP:Homo Sapiens @SQ SN:GL000209.1 LN:159169 AS:GRCh37 UR:http://www.broadinstitute.org/ftp/pub/seq/references/Homo_sapiens_assembly19.fasta M5:f40598e2a5a6b26e84a3775e0d1e2c81 SP:Homo Sapiens @SQ SN:GL000218.1 LN:161147 AS:GRCh37 UR:http://www.broadinstitute.org/ftp/pub/seq/references/Homo_sapiens_assembly19.fasta M5:1d708b54644c26c7e01c2dad5426d38c SP:Homo Sapiens @SQ SN:GL000220.1 LN:161802 AS:GRCh37 UR:http://www.broadinstitute.org/ftp/pub/seq/references/Homo_sapiens_assembly19.fasta M5:fc35de963c57bf7648429e6454f1c9db SP:Homo Sapiens @SQ SN:GL000213.1 LN:164239 AS:GRCh37 UR:http://www.broadinstitute.org/ftp/pub/seq/references/Homo_sapiens_assembly19.fasta M5:9d424fdcc98866650b58f004080a992a SP:Homo Sapiens @SQ SN:GL000211.1 LN:166566 AS:GRCh37 UR:http://www.broadinstitute.org/ftp/pub/seq/references/Homo_sapiens_assembly19.fasta M5:7daaa45c66b288847b9b32b964e623d3 SP:Homo Sapiens @SQ SN:GL000199.1 LN:169874 AS:GRCh37 UR:http://www.broadinstitute.org/ftp/pub/seq/references/Homo_sapiens_assembly19.fasta M5:569af3b73522fab4b40995ae4944e78e SP:Homo Sapiens @SQ SN:GL000217.1 LN:172149 AS:GRCh37 UR:http://www.broadinstitute.org/ftp/pub/seq/references/Homo_sapiens_assembly19.fasta M5:6d243e18dea1945fb7f2517615b8f52e SP:Homo Sapiens @SQ SN:GL000216.1 LN:172294 AS:GRCh37 UR:http://www.broadinstitute.org/ftp/pub/seq/references/Homo_sapiens_assembly19.fasta M5:642a232d91c486ac339263820aef7fe0 SP:Homo Sapiens @SQ SN:GL000215.1 LN:172545 AS:GRCh37 UR:http://www.broadinstitute.org/ftp/pub/seq/references/Homo_sapiens_assembly19.fasta M5:5eb3b418480ae67a997957c909375a73 SP:Homo Sapiens @SQ SN:GL000205.1 LN:174588 AS:GRCh37 UR:http://www.broadinstitute.org/ftp/pub/seq/references/Homo_sapiens_assembly19.fasta M5:d22441398d99caf673e9afb9a1908ec5 SP:Homo Sapiens @SQ SN:GL000219.1 LN:179198 AS:GRCh37 UR:http://www.broadinstitute.org/ftp/pub/seq/references/Homo_sapiens_assembly19.fasta M5:f977edd13bac459cb2ed4a5457dba1b3 SP:Homo Sapiens @SQ SN:GL000224.1 LN:179693 AS:GRCh37 UR:http://www.broadinstitute.org/ftp/pub/seq/references/Homo_sapiens_assembly19.fasta M5:d5b2fc04f6b41b212a4198a07f450e20 SP:Homo Sapiens @SQ SN:GL000223.1 LN:180455 AS:GRCh37 UR:http://www.broadinstitute.org/ftp/pub/seq/references/Homo_sapiens_assembly19.fasta M5:399dfa03bf32022ab52a846f7ca35b30 SP:Homo Sapiens @SQ SN:GL000195.1 LN:182896 AS:GRCh37 UR:http://www.broadinstitute.org/ftp/pub/seq/references/Homo_sapiens_assembly19.fasta M5:5d9ec007868d517e73543b005ba48535 SP:Homo Sapiens @SQ SN:GL000212.1 LN:186858 AS:GRCh37 UR:http://www.broadinstitute.org/ftp/pub/seq/references/Homo_sapiens_assembly19.fasta M5:563531689f3dbd691331fd6c5730a88b SP:Homo Sapiens @SQ SN:GL000222.1 LN:186861 AS:GRCh37 UR:http://www.broadinstitute.org/ftp/pub/seq/references/Homo_sapiens_assembly19.fasta M5:6fe9abac455169f50470f5a6b01d0f59 SP:Homo Sapiens @SQ SN:GL000200.1 LN:187035 AS:GRCh37 UR:http://www.broadinstitute.org/ftp/pub/seq/references/Homo_sapiens_assembly19.fasta M5:75e4c8d17cd4addf3917d1703cacaf25 SP:Homo Sapiens @SQ SN:GL000193.1 LN:189789 AS:GRCh37 UR:http://www.broadinstitute.org/ftp/pub/seq/references/Homo_sapiens_assembly19.fasta M5:dbb6e8ece0b5de29da56601613007c2a SP:Homo Sapiens @SQ SN:GL000194.1 LN:191469 AS:GRCh37 UR:http://www.broadinstitute.org/ftp/pub/seq/references/Homo_sapiens_assembly19.fasta M5:6ac8f815bf8e845bb3031b73f812c012 SP:Homo Sapiens @SQ SN:GL000225.1 LN:211173 AS:GRCh37 UR:http://www.broadinstitute.org/ftp/pub/seq/references/Homo_sapiens_assembly19.fasta M5:63945c3e6962f28ffd469719a747e73c SP:Homo Sapiens @SQ SN:GL000192.1 LN:547496 AS:GRCh37 UR:http://www.broadinstitute.org/ftp/pub/seq/references/Homo_sapiens_assembly19.fasta M5:325ba9e808f669dfeee210fdd7b470ac SP:Homo Sapiens @SQ SN:NC_007605 LN:171823 AS:NC_007605.1 UR:http://www.broadinstitute.org/ftp/pub/seq/references/Homo_sapiens_assembly19.fasta M5:6743bd63b3ff2b5b8985d8933c53290a SP:Epstein-Barr virus #CHROMOSOME POSITION NAME MAJOR_ALLELE MINOR_ALLELE MAF ANCHOR_SNP PANELS 1 7202190 rs970973 T C 0.578399 InfiniumFP3_Final_GLOBAL 1 11856378 rs1801133 G A 0.259151 SQNM_CARe_iSelect_FingerprintAssays 1 14096821 rs1210110 T C 0.159601 AffyBchipRe-Repool_3_,SQNM_1CHIP_FingerprintAssays,SQNM_1CHIP_on_affy,SQNM_FP_BCHIP_500K_GLOBAL 1 14804874 rs7555566 A G 0.223794 AffyBchipRe-Repool_3_,SQNM_1CHIP_FingerprintAssays,SQNM_1CHIP_on_affy,SQNM_FP_BCHIP_500K_GLOBAL 1 19500551 rs1009806 T C 0.322352 ILMN_OMNI_FP 1 29475341 rs2230678 C T 0.486261 1 29475648 rs2230679 T G 0.728033 1 29478419 rs2503005 C T 0.483791 rs2230678 1 29497820 rs1994859 C T 0.483791 rs2230678 1 29500995 rs2486204 T C 0.484167 rs2230678 1 29509603 rs2428556 C T 0.728976 rs2230679 1 29509832 rs2452789 G A 0.483777 rs2230678 1 29516090 rs3000851 A G 0.728595 rs2230679 1 29519778 rs2640464 T G 0.729842 rs2230679 fluidigm_96plex_v1 1 29533601 rs2452785 C T 0.48418 rs2230678 fluidigm_96plex_v1 1 29541404 rs2640468 C T 0.730609 rs2230679 1 29542637 rs1128400 A G 0.729842 rs2230679 1 29550973 rs2250641 C A 0.729842 rs2230679 1 29559397 rs2503010 A G 0.729201 rs2230679 1 29559613 rs2503009 C T 0.729617 rs2230679 1 29562070 rs2503006 A G 0.729842 rs2230679 1 31770944 rs6679393 T C 0.366778 fluidigm_96plex_v1 1 31772450 rs1566961 G A 0.367304 rs6679393 1 31787866 rs6679365 G T 0.36772 rs6679393 1 31788453 rs7556340 T A 0.367415 rs6679393 1 31795460 rs11576621 A G 0.367304 rs6679393 1 31796985 rs10914355 G A 0.369656 rs6679393 1 31805853 rs12126725 G T 0.36772 rs6679393 1 31810681 rs11582342 A G 0.36783 rs6679393 1 31822636 rs10798845 G A 0.368776 rs6679393 1 31837320 rs11436 T C 0.35617 rs6679393 1 52266242 rs10888734 G A 0.492899 fluidigm_96plex_v1 1 55505647 rs11591147 G T 0.010678 SQNM_CARe_iSelect_FingerprintAssays 1 55529187 rs505151 G A 0.851528 SQNM_CARe_iSelect_FingerprintAssays 1 74663709 rs11806946 G A 0.434638 1 74664149 rs4422957 T C 0.434331 rs11806946 1 74667686 rs577367 A G 0.435887 rs11806946 1 74671519 rs571848 A G 0.434331 rs11806946 1 74673341 rs520806 C T 0.434331 rs11806946 fluidigm_96plex_v1 1 74681968 rs792321 A G 0.434221 rs11806946 1 78578177 rs6666954 T C 0.527431 500K_AFFYQC_GLOBAL,i500K_AFFY_FP_GLOBAL_REV2_1__FPGLOBAL_POOL00015,i500K_AFFY_FP_SD_042606_5_ 1 83143775 rs685872 G A 0.540732 1 83144098 rs449899 C T 0.540765 rs685872 1 83144740 rs405874 C G 0.5445 rs685872 1 83145400 rs380546 C G 0.540732 rs685872 1 83145769 rs414558 A G 0.541563 rs685872 1 83146165 rs437602 C T 0.541563 rs685872 1 83147230 rs609270 C T 0.541978 rs685872 1 83147308 rs12057639 G A 0.542118 rs685872 fluidigm_96plex_v1 1 83161931 rs433054 G A 0.541632 rs685872 1 83162609 rs369489 T A 0.540722 rs685872 1 83164509 rs437359 T G 0.542845 rs685872 1 83165127 rs412418 T G 0.542429 rs685872 1 83165162 rs417904 G A 0.542429 rs685872 1 83166883 rs385163 G A 0.5425 rs685872 1 83168438 rs428242 C T 0.541978 rs685872 1 100316589 rs2307130 A G 0.405653 InfiniumFP3_Final_GLOBAL 1 150653650 rs2867302 T C 0.383936 1 150655421 rs7538493 T C 0.385607 rs2867302 1 150658971 rs11204697 C T 0.386118 rs2867302 fluidigm_96plex_v1 1 150660412 rs12403255 C T 0.386118 rs2867302 1 150664077 rs11803569 C T 0.386855 rs2867302 1 150666797 rs7412396 G A 0.385928 rs2867302 1 150666990 rs4540663 G C 0.386118 rs2867302 1 150669952 rs2275236 C T 0.385607 rs2867302 1 150671630 rs11204704 T C 0.386023 rs2867302 1 150674053 rs12063547 T G 0.383264 rs2867302 1 150678071 rs17658705 G T 0.385191 rs2867302 1 150679358 rs11586422 C T 0.385487 rs2867302 1 150686099 rs12072339 A G 0.382747 rs2867302 1 150697710 rs12086472 G A 0.385702 rs2867302 1 150702663 rs7540874 A C 0.38587 rs2867302 1 150705755 rs1415148 G A 0.389121 rs2867302 1 150711896 rs7418501 A T 0.383527 rs2867302 1 150940625 rs267738 T G 0.067034 GLOBAL_Affy_EXFP3 1 151372138 rs7172 G A 0.46619 GLOBAL_Affy_EXFP3 1 154573967 rs2229857 T C 0.589916 fluidigm_96plex_v1 1 156202173 rs1052053 A G 0.458853 fluidigm_96plex_v1 1 156206121 rs1052067 G A 0.16015 GLOBAL_Affy_EXFP3 1 189618057 rs546965 C T 0.502092 1 189618308 rs573805 G A 0.5 rs546965 1 189618415 rs572852 G T 0.500417 rs546965 1 189618512 rs499557 G A 0.499584 rs546965 1 189618733 rs524723 C A 0.500417 rs546965 1 189620278 rs532905 T C 0.500831 rs546965 fluidigm_96plex_v1 1 189623964 rs495240 T C 0.491525 rs546965 1 189627183 rs473773 C T 0.500831 rs546965 1 189630140 rs563323 T C 0.499165 rs546965 1 214958758 rs4655374 C T 0.596747 1 214960449 rs4655377 G C 0.594426 rs4655374 1 214961271 rs10779621 T C 0.594426 rs4655374 1 214962771 rs12734277 T C 0.594347 rs4655374 fluidigm_96plex_v1 1 214965457 rs1450601 C G 0.594088 rs4655374 1 214965896 rs1450599 G A 0.594921 rs4655374 1 214969949 rs12026786 A G 0.594662 rs4655374 1 214970458 rs2885632 G A 0.594921 rs4655374 1 214971131 rs4366292 C T 0.594921 rs4655374 1 214972337 rs4655264 A G 0.595159 rs4655374 1 214974463 rs1450607 T C 0.594505 rs4655374 1 214974738 rs4422979 T C 0.59609 rs4655374 1 230845794 rs699 A G 0.740233 SQNM_CARe_iSelect_FingerprintAssays 1 236698470 rs1891241 G A 0.50209 1 236700823 rs1041934 T C 0.504595 rs1891241 1 236700982 rs2737706 T C 0.502912 rs1891241 fluidigm_96plex_v1 1 236701492 rs16833819 T C 0.502912 rs1891241 1 236701525 rs16833820 C T 0.50208 rs1891241 1 236703767 rs2758994 C T 0.504156 rs1891241 1 236707816 rs1124907 C T 0.502496 rs1891241 1 236711323 rs15701 T C 0.503342 rs1891241 1 236711586 rs1160 G A 0.502914 rs1891241 1 236711882 rs1041940 G T 0.501681 rs1891241 1 236711981 rs1041944 C T 0.502919 rs1891241 1 236713828 rs2758998 G A 0.501248 rs1891241 1 236714916 rs2540 T C 0.502936 rs1891241 2 4135981 rs1024026 C T 0.355649 InfiniumFP3_Final_GLOBAL 2 7540695 rs2163257 C G 0.597338 i500K_AFFY_FP_GLOBAL_REV2_1__FPGLOBAL_POOL00015,i500K_AFFY_FP_SD_042606_5_ 2 8178735 rs1364054 A G 0.437188 SQNM_1CHIP_FingerprintAssays,SQNM_1CHIP_on_affy 2 10928387 rs4669625 G T 0.424771 2 10928777 rs2952626 A C 0.424293 rs4669625 2 10928906 rs1734432 T C 0.424771 rs4669625 2 10928962 rs1734431 A G 0.422464 rs4669625 2 10929133 rs1734430 A G 0.426018 rs4669625 2 10929867 rs11904084 T C 0.425062 rs4669625 2 10932207 rs1734422 C A 0.424293 rs4669625 fluidigm_96plex_v1 2 10932748 rs1734424 T C 0.425354 rs4669625 2 10935224 rs1686447 T C 0.425062 rs4669625 2 10936709 rs1734341 T A 0.424771 rs4669625 2 10936805 rs1734342 G C 0.42423 rs4669625 2 10937409 rs1686444 C T 0.424356 rs4669625 2 10942411 rs1734361 G T 0.424457 rs4669625 2 10942687 rs4758 C T 0.427665 rs4669625 2 10943882 rs1734365 A G 0.425125 rs4669625 2 10947801 rs1686430 A G 0.423977 rs4669625 2 10947940 rs1387570 A T 0.42423 rs4669625 2 10947993 rs1387569 C A 0.424686 rs4669625 2 10948548 rs1686426 C A 0.42423 rs4669625 2 12790328 rs1000053 C T 0.133001 ILMN_OMNI_FP 2 15678482 rs2380657 T C 0.38255 A1GLOBAL_100K_AFFYFP_4pools,i100K_AFFY_FP_SD_GLOBAL 2 20838318 rs3796064 G A 0.345802 GLOBAL_Affy_EXFP3 2 25064193 rs2241759 G A 0.5133 fluidigm_96plex_v1 2 27351279 rs1866561 G A 0.619683 InfiniumFP3_Final_GLOBAL 2 39082344 rs7598922 T C 0.584027 fluidigm_96plex_v1 2 65200618 rs4671636 C A 0.488255 500K_AFFYQC_GLOBAL 2 67241174 rs6734275 G A 0.447215 AffyBchipRe-Repool_3_,SQNM_1CHIP_FingerprintAssays,SQNM_1CHIP_on_affy,SQNM_FP_BCHIP_500K_GLOBAL 2 71580129 rs2058899 G A 0.396093 2 71633389 rs6714975 C T 0.396044 rs2058899 fluidigm_96plex_v1 2 79422965 rs1434199 C G 0.642617 A1GLOBAL_100K_AFFYFP_4pools,i100K_AFFY_FP_SD_GLOBAL 2 86332656 rs4832244 T G 0.642798 2 86332809 rs4832245 G A 0.641423 rs4832244 2 86337930 rs1075622 T C 0.64256 rs4832244 fluidigm_96plex_v1 2 86351240 rs6750581 T C 0.642798 rs4832244 2 86352825 rs6740228 C T 0.642381 rs4832244 2 86359405 rs1559515 G T 0.642977 rs4832244 2 86360809 rs2241436 G A 0.641965 rs4832244 2 86363074 rs3770069 A G 0.642678 rs4832244 2 98274527 rs1042705 G C 0.601949 GLOBAL_Affy_EXFP3 2 112680741 rs1996328 A G 0.527061 2 112684371 rs4468823 T C 0.528263 rs1996328 2 112699350 rs10207820 T C 0.528286 rs1996328 2 112719431 rs2871922 A G 0.529534 rs1996328 2 112722490 rs6541971 A G 0.529118 rs1996328 2 112736723 rs10166564 T G 0.52831 rs1996328 2 112743917 rs1554214 G A 0.528263 rs1996328 2 112744513 rs1996326 T C 0.528263 rs1996328 2 112745114 rs13394651 T A 0.528678 rs1996328 2 112747653 rs11123073 G A 0.529534 rs1996328 2 112748514 rs10186291 A G 0.529534 rs1996328 fluidigm_96plex_v1 2 112751928 rs7604639 G A 0.529925 rs1996328 2 112752880 rs6739294 G A 0.529534 rs1996328 2 112753097 rs6726639 A C 0.52951 rs1996328 fluidigm_96plex_v1 2 112753230 rs11683421 T C 0.52951 rs1996328 2 112755001 rs3811635 A G 0.529682 rs1996328 2 118280239 rs7606639 G C 0.368552 2 118280812 rs10496542 C G 0.368246 rs7606639 2 118281020 rs1515993 G C 0.368246 rs7606639 2 118281667 rs1158447 G A 0.368333 rs7606639 2 118281844 rs1158448 T C 0.368246 rs7606639 fluidigm_96plex_v1 2 118282639 rs4848447 C T 0.368246 rs7606639 2 147596973 rs4411641 A G 0.541563 500K_AFFYQC_GLOBAL,InfiniumFP3_Final_GLOBAL,i500K_AFFY_FP_GLOBAL_REV2_1__FPGLOBAL_POOL00015,i500K_AFFY_FP_SD_042606_5_ 2 161797513 rs1524625 A G 0.558652 i500K_AFFY_FP_GLOBAL_REV2_1__FPGLOBAL_POOL00015,i500K_AFFY_FP_SD_042606_5_ 2 207041053 rs3732083 T C 0.4804 fluidigm_96plex_v1 2 223845942 rs7584993 C A 0.605985 AffyBchipRe-Repool_3_,SQNM_1CHIP_FingerprintAssays,SQNM_1CHIP_on_affy,SQNM_FP_BCHIP_500K_GLOBAL 2 232326417 rs1131171 C T 0.425187 fluidigm_96plex_v1 3 12393125 rs1801282 C G 0.056025 SQNM_CARe_iSelect_FingerprintAssays 3 17077268 rs17272796 C T 0.623026 AffyBchipRe-Repool_3_,SQNM_1CHIP_FingerprintAssays,SQNM_1CHIP_on_affy,SQNM_FP_BCHIP_500K_GLOBAL 3 37627112 rs1155741 T C 0.74 AffyBchipRe-Repool_3_,SQNM_1CHIP_FingerprintAssays,SQNM_1CHIP_on_affy,SQNM_FP_BCHIP_500K_GLOBAL 3 60898109 rs9821525 T C 0.439318 3 60898434 rs11130795 T C 0.440417 rs9821525 500K_AFFYQC_GLOBAL,i500K_AFFY_FP_GLOBAL_REV2_1__FPGLOBAL_POOL00015,i500K_AFFY_FP_SD_042606_5_ 3 95176370 rs4371519 C T 0.459201 3 95176412 rs4378962 T C 0.461218 rs4371519 3 95176677 rs4572767 C A 0.459235 rs4371519 fluidigm_96plex_v1 3 95178221 rs4271915 T C 0.458819 rs4371519 3 95181130 rs6437870 T C 0.458853 rs4371519 3 95181382 rs7652786 C T 0.459268 rs4371519 3 95181602 rs5000487 T G 0.457155 rs4371519 3 95182856 rs6782266 T C 0.458403 rs4371519 3 95184353 rs7629169 A G 0.456976 rs4371519 3 95184490 rs5011739 A G 0.458784 rs4371519 3 95193694 rs7629655 C T 0.464376 rs4371519 3 95194773 rs12496545 C T 0.460899 rs4371519 3 101042594 rs7431086 T C 0.409659 3 101043488 rs13440 G A 0.410566 rs7431086 3 101046671 rs9849770 C A 0.410849 rs7431086 3 101058775 rs5009801 A G 0.410224 rs7431086 fluidigm_96plex_v1 3 101059816 rs3846085 G A 0.410224 rs7431086 3 101069852 rs9877228 G C 0.41015 rs7431086 3 101072258 rs9875156 A C 0.411398 rs7431086 3 101085413 rs939443 G A 0.411371 rs7431086 3 101097436 rs1402255 T C 0.408978 rs7431086 3 101100965 rs2049108 A G 0.409508 rs7431086 3 101109166 rs9857723 A T 0.412952 rs7431086 3 101113177 rs1520653 C T 0.409809 rs7431086 3 101122120 rs2317750 C A 0.410224 rs7431086 3 101136340 rs9822356 C T 0.408787 rs7431086 3 101136385 rs4482646 C A 0.405621 rs7431086 3 101141471 rs13314150 G A 0.41015 rs7431086 3 101146444 rs17344542 T G 0.408215 rs7431086 3 101160339 rs10936621 T C 0.411398 rs7431086 3 101165724 rs10936628 G A 0.410224 rs7431086 3 101177644 rs12496159 A C 0.410982 rs7431086 3 101181890 rs2317703 T C 0.410224 rs7431086 3 101211487 rs3846087 A G 0.410224 rs7431086 3 101219818 rs7619540 G A 0.410566 rs7431086 3 101226547 rs4683848 T C 0.396934 rs7431086 3 101230304 rs2317704 C G 0.409393 rs7431086 3 111951023 rs6781344 C T 0.625624 3 111965136 rs9878213 G A 0.625935 rs6781344 3 111965682 rs9879184 G A 0.630362 rs6781344 3 111966623 rs4282033 C T 0.626566 rs6781344 3 111967078 rs7638520 A C 0.625935 rs6781344 3 111970006 rs11922559 T C 0.625935 rs6781344 3 111971333 rs7624367 T C 0.627394 rs6781344 3 111971490 rs7613061 G A 0.625935 rs6781344 3 111981924 rs9809404 T C 0.625935 rs6781344 fluidigm_96plex_v1 3 121633503 rs9862977 G A 0.52286 3 121633904 rs2049330 G A 0.52286 rs9862977 fluidigm_96plex_v1 3 121633964 rs2049331 C T 0.52286 rs9862977 3 121634887 rs1357531 G A 0.52286 rs9862977 3 121635230 rs2700420 G A 0.524624 rs9862977 3 121636223 rs11914993 A G 0.522879 rs9862977 3 121637178 rs2877566 C A 0.522879 rs9862977 3 121638290 rs2689283 C T 0.519682 rs9862977 3 121641352 rs11920521 A G 0.521411 rs9862977 3 121641528 rs7637569 G A 0.523411 rs9862977 3 121641693 rs2293616 G A 0.522157 rs9862977 3 123378534 rs39639 C G 0.468386 500K_AFFYQC_GLOBAL,i500K_AFFY_FP_GLOBAL_REV2_1__FPGLOBAL_POOL00015,i500K_AFFY_FP_SD_042606_5_ 3 148727133 rs4938 G A 0.292429 GLOBAL_Affy_EXFP3 3 151899704 rs161792 T A 0.722731 AffyBchipRe-Repool_3_,SQNM_1CHIP_FingerprintAssays,SQNM_1CHIP_on_affy,SQNM_FP_BCHIP_500K_GLOBAL 3 157979704 rs827113 C T 0.524147 3 157989979 rs1213048 T C 0.520502 rs827113 3 157992277 rs1852285 A G 0.524522 rs827113 3 157992814 rs7643792 A G 0.524583 rs827113 3 157996767 rs827099 A G 0.524666 rs827113 3 158013249 rs827129 A G 0.524126 rs827113 3 158016997 rs1730007 T C 0.520485 rs827113 3 171041055 rs10513695 T G 0.302161 ILMN_OMNI_FP 3 179322385 rs2339844 A C 0.116959 GLOBAL_Affy_EXFP3 3 183358016 rs2313450 G A 0.400084 3 183361256 rs6802882 T C 0.3995 rs2313450 3 183367149 rs9876259 T C 0.399418 rs2313450 3 183368891 rs2293031 C T 0.400665 rs2313450 3 183371250 rs11917105 T G 0.399418 rs2313450 fluidigm_96plex_v1 3 183371457 rs11920784 A G 0.398418 rs2313450 3 183372075 rs9882822 C T 0.399582 rs2313450 3 183372471 rs9290766 G C 0.399418 rs2313450 3 183377726 rs10937144 C T 0.400249 rs2313450 3 183378501 rs2054172 A G 0.397822 rs2313450 3 183388450 rs3772704 T C 0.396825 rs2313450 3 183393324 rs9863562 G A 0.399667 rs2313450 3 183404661 rs6777778 A G 0.391926 rs2313450 4 23815662 rs8192678 C T 0.259167 SQNM_CARe_iSelect_FingerprintAssays 4 27162478 rs11940551 T G 0.205686 SQNM_1CHIP_FingerprintAssays,SQNM_1CHIP_on_affy 4 42639186 rs898500 A G 0.502078 ILMN_OMNI_FP,InfiniumFP3_Final_GLOBAL 4 57194525 rs6834736 C G 0.512884 500K_AFFYQC_GLOBAL,i500K_AFFY_FP_GLOBAL_REV2_1__FPGLOBAL_POOL00015,i500K_AFFY_FP_SD_042606_5_ 4 73615956 rs1350836 C T 0.352868 A1GLOBAL_100K_AFFYFP_4pools,i100K_AFFY_FP_SD_GLOBAL 4 98936011 rs13122456 A G 0.357083 4 98945408 rs4345191 A G 0.35744 rs13122456 4 98950961 rs1365458 G A 0.357321 rs13122456 4 98959870 rs4292342 A T 0.35744 rs13122456 4 98966141 rs1967977 A G 0.35744 rs13122456 4 98968118 rs7691433 T A 0.35744 rs13122456 4 98979862 rs11935588 G A 0.35744 rs13122456 4 99002519 rs9998803 C T 0.35744 rs13122456 4 99002848 rs13121558 G A 0.357321 rs13122456 4 99010145 rs13149779 C A 0.35744 rs13122456 4 99016546 rs6846229 C T 0.35744 rs13122456 4 99033860 rs1111541 G A 0.353288 rs13122456 4 99037679 rs7663924 C T 0.357737 rs13122456 4 99037859 rs7664169 A G 0.35744 rs13122456 fluidigm_96plex_v1 4 99037986 rs9994346 T C 0.357737 rs13122456 4 99039967 rs2865949 A G 0.35744 rs13122456 4 99054872 rs6830124 T C 0.35744 rs13122456 4 99055406 rs13328042 A G 0.356547 rs13122456 4 99056877 rs10031292 A G 0.35744 rs13122456 4 99056900 rs10009206 C A 0.357741 rs13122456 4 99057262 rs7673880 A G 0.357083 rs13122456 4 99060544 rs17486413 C A 0.357502 rs13122456 4 99060993 rs6532724 C T 0.357203 rs13122456 4 114863152 rs10034059 C T 0.423077 4 114863265 rs13126699 T C 0.424583 rs10034059 4 114863406 rs11725460 T G 0.424583 rs10034059 4 114863593 rs7679911 C G 0.424583 rs10034059 fluidigm_96plex_v1 4 114863762 rs7658304 T A 0.424583 rs10034059 4 152346103 rs4235219 T G 0.458784 4 152351160 rs2724567 A G 0.458819 rs4235219 4 152355268 rs2709828 C T 0.459268 rs4235219 fluidigm_96plex_v1 4 152363772 rs2709815 T C 0.460417 rs4235219 4 152370637 rs2709842 T C 0.46173 rs4235219 4 152376050 rs6845648 C T 0.461699 rs4235219 4 152381800 rs2724574 A T 0.459268 rs4235219 4 152382050 rs2709817 A G 0.458194 rs4235219 4 152383832 rs2709819 A G 0.458853 rs4235219 4 152383962 rs10454251 T C 0.460931 rs4235219 4 152390413 rs7682770 A C 0.458819 rs4235219 4 152431770 rs1470280 G A 0.458437 rs4235219 4 152445831 rs2053566 A C 0.456376 rs4235219 4 185999543 rs6841061 G A 0.566722 500K_AFFYQC_GLOBAL,i500K_AFFY_FP_GLOBAL_REV2_1__FPGLOBAL_POOL00015,i500K_AFFY_FP_SD_042606_5_ 5 49564628 rs1674512 A G 0.465862 5 49575177 rs4865676 C A 0.46589 rs1674512 5 49595770 rs7709906 C G 0.467527 rs1674512 5 49596072 rs7448495 G A 0.467554 rs1674512 5 49607622 rs5011669 A G 0.465359 rs1674512 5 49613661 rs12697055 A G 0.466694 rs1674512 5 49623598 rs1033108 A G 0.465445 rs1674512 5 49623821 rs1344339 A T 0.467056 rs1674512 5 49645820 rs7710841 C T 0.466306 rs1674512 5 49648025 rs13174293 C T 0.466278 rs1674512 5 49682163 rs10042504 A G 0.465503 rs1674512 5 49696932 rs2036902 A G 0.463629 rs1674512 fluidigm_96plex_v1 5 49739908 rs13157992 C T 0.46625 rs1674512 5 49746323 rs7720960 A G 0.469456 rs1674512 5 49767759 rs7378969 C T 0.465058 rs1674512 5 57617403 rs37535 G C 0.566556 500K_AFFYQC_GLOBAL,i500K_AFFY_FP_GLOBAL_REV2_1__FPGLOBAL_POOL00015,i500K_AFFY_FP_SD_042606_5_ 5 64862812 rs669571 A G 0.570715 5 64863832 rs460262 T G 0.569992 rs669571 5 64869624 rs468821 T C 0.572795 rs669571 5 64877903 rs37339 G A 0.571963 rs669571 5 64881181 rs27139 G T 0.571547 rs669571 5 64881936 rs27141 A G 0.571904 rs669571 fluidigm_96plex_v1 5 64889635 rs154858 G A 0.571904 rs669571 5 64901653 rs154942 T C 0.572319 rs669571 5 64904629 rs152060 C G 0.572319 rs669571 5 64907064 rs40198 G A 0.571904 rs669571 5 64907885 rs37332 G C 0.571963 rs669571 5 64919450 rs468754 T C 0.571131 rs669571 5 74054595 rs10515191 A G 0.423623 5 74058083 rs11948188 C T 0.426434 rs10515191 5 74069863 rs6874609 A G 0.424709 rs10515191 fluidigm_96plex_v1 5 74079294 rs6453084 G T 0.422693 rs10515191 5 79172136 rs265005 A G 0.204489 A1GLOBAL_100K_AFFYFP_4pools,i100K_AFFY_FP_SD_GLOBAL 5 82837631 rs160277 G T 0.349709 InfiniumFP3_Final_GLOBAL 5 88416354 rs9293511 C T 0.558528 AffyBchipRe-Repool_3_,SQNM_1CHIP_FingerprintAssays,SQNM_1CHIP_on_affy,SQNM_FP_BCHIP_500K_GLOBAL 5 96232286 rs2549785 C T 0.540722 5 96237326 rs2287988 G A 0.537083 rs2549785 5 96238401 rs2548533 A G 0.537406 rs2549785 5 96244638 rs2549795 A G 0.537438 rs2549785 5 96245439 rs1056893 C T 0.535505 rs2549785 5 96245518 rs2549797 A G 0.537406 rs2549785 fluidigm_96plex_v1 5 96249115 rs2255546 C T 0.537531 rs2549785 5 99124408 rs749527 C T 0.593101 5 99140203 rs6594760 A G 0.593101 rs749527 5 99143862 rs2369765 T G 0.59216 rs749527 5 99145743 rs1901968 C T 0.594719 rs749527 5 99146521 rs2123812 A G 0.595397 rs749527 5 99147531 rs7705200 C G 0.593672 rs749527 5 99150534 rs11955182 C T 0.593178 rs749527 5 99151377 rs1078772 A G 0.592423 rs749527 5 99152992 rs2963303 T C 0.592887 rs749527 5 99156362 rs2369754 C A 0.593178 rs749527 fluidigm_96plex_v1 5 101671415 rs1584717 C G 0.579101 fluidigm_96plex_v1 5 101679298 rs1869104 T C 0.578969 rs1584717 5 101687035 rs6873373 A G 0.578203 rs1584717 5 101728519 rs1545488 C G 0.577435 rs1584717 5 101729504 rs1562960 C T 0.579517 rs1584717 5 101762909 rs10055023 A G 0.578727 rs1584717 5 101773239 rs1376894 A G 0.579583 rs1584717 5 101795490 rs11746217 A G 0.579101 rs1584717 5 101803412 rs1597771 G A 0.579167 rs1584717 5 140590766 rs2910006 A G 0.439482 fluidigm_96plex_v1 5 140602119 rs2910004 A G 0.4399 rs2910006 5 142779317 rs6195 T C 0.01467 SQNM_CARe_iSelect_FingerprintAssays 5 148206440 rs1042713 G A 0.487927 SQNM_CARe_iSelect_FingerprintAssays 5 148206473 rs1042714 G C 0.810403 SQNM_CARe_iSelect_FingerprintAssays 5 153363334 rs390299 G A 0.686978 fluidigm_96plex_v1 5 153366603 rs386841 T C 0.687864 rs390299 5 153371463 rs707179 C T 0.6899 rs390299 5 153385233 rs869737 C T 0.687604 rs390299 5 153403615 rs4431388 A G 0.688279 rs390299 5 153405085 rs2578373 C T 0.687448 rs390299 5 153405654 rs2560048 T C 0.686299 rs390299 5 153406644 rs9324765 C T 0.687604 rs390299 5 153412185 rs7731081 C G 0.687448 rs390299 5 153413390 rs2578377 C T 0.689167 rs390299 5 153415482 rs2560046 T C 0.688177 rs390299 5 153419342 rs2560062 C T 0.687448 rs390299 5 153432733 rs2578386 T C 0.687656 rs390299 5 153432970 rs2255493 C T 0.687188 rs390299 5 156355375 rs2862058 A G 0.349127 AffyBchipRe-Repool_3_,SQNM_FP_BCHIP_500K_GLOBAL 5 156765981 rs3734026 G A 0.491265 5 156766037 rs3734027 A G 0.490856 rs3734026 5 156766273 rs3734028 G A 0.491272 rs3734026 5 156766708 rs10037858 A G 0.491272 rs3734026 fluidigm_96plex_v1 5 156767186 rs10058181 A G 0.491272 rs3734026 5 156767828 rs7704145 G T 0.491272 rs3734026 5 156769668 rs7715719 C T 0.492077 rs3734026 6 8378609 rs10484750 T C 0.288574 ILMN_OMNI_FP 6 12165363 rs219950 C T 0.31568 InfiniumFP3_Final_GLOBAL 6 19875846 rs1028330 G A 0.428928 A1GLOBAL_100K_AFFYFP_4pools,i100K_AFFY_FP_SD_GLOBAL 6 30340397 rs3130362 A G 0.601082 6 30342190 rs3130368 A G 0.602083 rs3130362 6 30343183 rs3132635 C T 0.601829 rs3130362 6 30343251 rs3129819 G C 0.601829 rs3130362 6 30343983 rs3130369 A G 0.601829 rs3130362 6 30344166 rs3132633 C A 0.601913 rs3130362 6 30344690 rs3094062 G A 0.601498 rs3130362 6 30345139 rs1419653 C T 0.6025 rs3130362 6 30357176 rs3130139 T C 0.603491 rs3130362 6 30358151 rs3094051 A G 0.605088 rs3130362 6 30358522 rs3130144 T C 0.604583 rs3130362 6 30360602 rs3094045 G A 0.605241 rs3130362 6 30361193 rs3094698 T C 0.604323 rs3130362 fluidigm_96plex_v1 6 30361232 rs3094697 T C 0.604323 rs3130362 6 30361418 rs3094042 G A 0.604825 rs3130362 6 30361480 rs3094041 G A 0.604323 rs3130362 6 30361759 rs3094040 G A 0.604323 rs3130362 6 30361893 rs3130106 A G 0.604323 rs3130362 6 30362196 rs3130107 A G 0.604323 rs3130362 6 30362614 rs3130108 T G 0.606187 rs3130362 6 30362751 rs3130109 T G 0.603993 rs3130362 6 30363428 rs3130112 T G 0.604323 rs3130362 6 30363945 rs3130113 C T 0.601759 rs3130362 6 31543031 rs1800629 G A 0.0798 SQNM_CARe_iSelect_FingerprintAssays 6 31610529 rs1077393 A G 0.460184 fluidigm_96plex_v1 6 33051139 rs9277396 G A 0.472984 6 33051820 rs9277421 G A 0.467116 rs9277396 6 33051910 rs9277426 C A 0.473356 rs9277396 6 33052186 rs9277434 A G 0.471943 rs9277396 6 33052250 rs9277437 A G 0.472984 rs9277396 6 33053271 rs9277462 T C 0.472984 rs9277396 6 33053468 rs9277469 G T 0.472523 rs9277396 6 33053682 rs9277471 G A 0.473772 rs9277396 fluidigm_96plex_v1 6 33053723 rs9277472 T C 0.46789 rs9277396 6 33054457 rs1042544 A G 0.472362 rs9277396 6 33054721 rs9277533 C T 0.472984 rs9277396 6 33055247 rs9277542 T C 0.472962 rs9277396 6 33055487 rs9277550 T C 0.471714 rs9277396 6 33055538 rs9277554 C T 0.475376 rs9277396 6 33055780 rs3128963 C T 0.473772 rs9277396 6 33056435 rs3117228 G T 0.472984 rs9277396 6 33057176 rs3130188 T C 0.472546 rs9277396 6 33235755 rs213199 G A 0.481682 fluidigm_96plex_v1 6 43020188 rs4711738 G A 0.32128 GLOBAL_Affy_EXFP3 6 48994243 rs4537140 T C 0.570892 6 48994615 rs9369842 T C 0.570952 rs4537140 fluidigm_96plex_v1 6 49001733 rs10447402 G A 0.572379 rs4537140 6 49007773 rs4326233 T C 0.570241 rs4537140 6 49016776 rs6458651 C T 0.572446 rs4537140 6 49017415 rs10948479 A C 0.5703 rs4537140 6 49020904 rs4352681 G A 0.572803 rs4537140 6 49021881 rs6931955 T C 0.572319 rs4537140 6 49022964 rs4440458 T C 0.573689 rs4537140 6 49023213 rs4327693 G T 0.572319 rs4537140 6 49038388 rs4305722 C T 0.578571 rs4537140 6 49047862 rs6927493 C T 0.570771 rs4537140 6 65525121 rs1390272 C T 0.411056 A1GLOBAL_100K_AFFYFP_4pools,i100K_AFFY_FP_SD_GLOBAL 6 79424433 rs9352613 A G 0.256803 SQNM_1CHIP_FingerprintAssays,SQNM_1CHIP_on_affy 6 79572296 rs9352667 C T 0.497506 6 79572799 rs9448584 G T 0.497086 rs9352667 6 79584433 rs9352670 A G 0.497506 rs9352667 6 79590385 rs9359354 A G 0.497506 rs9352667 6 79612800 rs9352675 G A 0.497922 rs9352667 6 79615208 rs4706079 G A 0.497506 rs9352667 6 79655477 rs10943605 G A 0.497504 rs9352667 fluidigm_96plex_v1 6 79657391 rs1984195 G A 0.497498 rs9352667 6 79678211 rs9343856 G A 0.498332 rs9352667 6 79762172 rs2152951 G A 0.49542 rs9352667 6 109853446 rs942923 A G 0.635495 6 109870377 rs9374097 A C 0.635495 rs942923 6 109870688 rs9386813 T C 0.635607 rs942923 6 109877759 rs9374099 T C 0.635906 rs942923 6 109879241 rs9384713 G T 0.635225 rs942923 6 109928008 rs4946992 T C 0.634583 rs942923 6 109951180 rs9487176 C A 0.63591 rs942923 6 109952244 rs9480984 T C 0.636439 rs942923 6 109953266 rs12215867 G T 0.635607 rs942923 6 109954252 rs1406957 C T 0.635495 rs942923 fluidigm_96plex_v1 6 109962904 rs7744981 A C 0.635607 rs942923 6 109963126 rs7745469 C T 0.636023 rs942923 6 109963617 rs7749910 A G 0.63591 rs942923 6 109965474 rs9400310 G A 0.637009 rs942923 6 109974678 rs11968485 C T 0.636439 rs942923 6 109976134 rs7450970 A G 0.635338 rs942923 6 109982160 rs2016207 C T 0.696309 A1GLOBAL_100K_AFFYFP_4pools,i100K_AFFY_FP_SD_GLOBAL 6 109990987 rs9480991 C A 0.638333 rs942923 6 110007258 rs2145144 A C 0.63591 rs942923 6 111283592 rs9374227 C T 0.382721 fluidigm_96plex_v1 6 111288020 rs9400435 G A 0.383624 rs9374227 6 111292632 rs9400437 G A 0.382819 rs9374227 6 111293574 rs11153266 A G 0.381765 rs9374227 6 111296469 rs3892789 T C 0.382182 rs9374227 6 111298225 rs9400442 A G 0.383209 rs9374227 6 111299839 rs9398257 C G 0.383236 rs9374227 6 111303742 rs2880172 A G 0.383943 rs9374227 6 111303903 rs3862837 A G 0.383847 rs9374227 6 111303974 rs3862838 A G 0.383624 rs9374227 6 111307438 rs10499059 A G 0.383111 rs9374227 6 127066190 rs853971 T C 0.509695 500K_AFFYQC_GLOBAL 6 132172368 rs1044498 A C 0.400417 SQNM_CARe_iSelect_FingerprintAssays 6 149721690 rs237025 G A 0.683181 GLOBAL_Affy_EXFP3 6 153344531 rs685449 T A 0.452579 AffyBchipRe-Repool_3_,SQNM_1CHIP_FingerprintAssays,SQNM_1CHIP_on_affy,SQNM_FP_BCHIP_500K_GLOBAL 6 156275691 rs4870405 G T 0.450915 i500K_AFFY_FP_GLOBAL_REV2_1__FPGLOBAL_POOL00015,i500K_AFFY_FP_SD_042606_5_ 6 160211339 rs2273827 C A 0.62552 fluidigm_96plex_v1 6 160211636 rs2273821 G A 0.625729 rs2273827 7 4490854 rs314605 C T 0.786367 AffyBchipRe-Repool_3_,SQNM_FP_BCHIP_500K_GLOBAL 7 6063283 rs4560 C T 0.355121 GLOBAL_Affy_EXFP3 7 6066461 rs2639 T C 0.33985 fluidigm_96plex_v1 7 11579793 rs10242744 G A 0.302161 ILMN_OMNI_FP 7 37924737 rs1530822 T G 0.53 7 37924879 rs2242027 A G 0.529559 rs1530822 7 37925255 rs935766 C T 0.530366 rs1530822 7 37925438 rs935765 T C 0.52951 rs1530822 fluidigm_96plex_v1 7 37926311 rs1349392 G A 0.530366 rs1530822 7 37927779 rs2251179 T G 0.52951 rs1530822 7 37929568 rs1975640 T G 0.52951 rs1530822 7 44612229 rs2289057 G A 0.1533 GLOBAL_Affy_EXFP3 7 50545191 rs4992502 C A 0.514975 7 50545549 rs12718527 A G 0.513727 rs4992502 7 50545571 rs12718528 A G 0.513727 rs4992502 7 50546261 rs4580999 C T 0.513727 rs4992502 fluidigm_96plex_v1 7 50546459 rs1349492 G A 0.514131 rs4992502 7 50546764 rs10899734 C T 0.513727 rs4992502 7 50546891 rs10899735 C T 0.513727 rs4992502 7 50547584 rs11575457 A C 0.512884 rs4992502 7 68182022 rs6972020 A T 0.398087 fluidigm_96plex_v1 7 68182148 rs6976492 T G 0.398171 rs6972020 7 68182205 rs6976520 T C 0.39734 rs6972020 7 68182289 rs6972513 A G 0.397756 rs6972020 7 68184132 rs10240244 C G 0.399582 rs6972020 7 68184206 rs4584031 T C 0.397671 rs6972020 7 68184434 rs4316055 A T 0.398418 rs6972020 7 68184722 rs4557575 G A 0.398666 rs6972020 7 68184758 rs4320430 G C 0.397756 rs6972020 7 86609511 rs1024376 G A 0.387781 7 86620077 rs1635034 G A 0.388196 rs1024376 7 86621010 rs1635037 C T 0.388519 rs1024376 7 86625642 rs1634997 G A 0.387365 rs1024376 fluidigm_96plex_v1 7 86625854 rs1767742 T G 0.387365 rs1024376 7 86625909 rs1767741 G C 0.386534 rs1024376 7 86627187 rs1767735 G A 0.386949 rs1024376 7 86627630 rs767437 A G 0.386534 rs1024376 7 86627679 rs767436 T G 0.387365 rs1024376 7 86628006 rs1635003 C T 0.388196 rs1024376 7 86628526 rs1767725 T C 0.384712 rs1024376 7 86629651 rs1635009 C T 0.387177 rs1024376 7 86629756 rs1635010 T G 0.387781 rs1024376 7 86630550 rs739875 G A 0.38954 rs1024376 7 86633357 rs1767698 T C 0.387406 rs1024376 7 86633445 rs1635020 G A 0.387917 rs1024376 7 86633713 rs1635021 G A 0.389589 rs1024376 7 86636477 rs2373338 C T 0.387177 rs1024376 7 86983715 rs7808249 A G 0.662917 AffyBchipRe-Repool_3_,SQNM_1CHIP_FingerprintAssays,SQNM_1CHIP_on_affy,SQNM_FP_BCHIP_500K_GLOBAL 7 115893845 rs17138483 A C 0.43059 7 115895010 rs4730719 G T 0.433946 rs17138483 7 115895235 rs4730720 T C 0.432668 rs17138483 7 115895718 rs6966770 A G 0.433278 rs17138483 fluidigm_96plex_v1 7 115897096 rs2402057 T C 0.432668 rs17138483 7 115897871 rs2896180 A G 0.433333 rs17138483 7 115897884 rs2896181 C T 0.43771 rs17138483 7 115898885 rs3807982 T C 0.434331 rs17138483 8 2112130 rs1036689 G A 0.310889 ILMN_OMNI_FP 8 16907125 rs2014286 G A 0.490017 500K_AFFYQC_GLOBAL,InfiniumFP3_Final_GLOBAL,i500K_AFFY_FP_GLOBAL_REV2_1__FPGLOBAL_POOL00015,i500K_AFFY_FP_SD_042606_5_ 8 19819724 rs328 C G 0.102349 SQNM_CARe_iSelect_FingerprintAssays 8 37823798 rs4994 A G 0.110233 SQNM_CARe_iSelect_FingerprintAssays 8 58057655 rs16921695 T G 0.353577 8 58063408 rs10958526 C T 0.353455 rs16921695 8 58063856 rs10958527 T C 0.353455 rs16921695 8 58065790 rs7017199 T C 0.354115 rs16921695 fluidigm_96plex_v1 8 58068354 rs1561784 T C 0.354115 rs16921695 8 58081585 rs10958532 A G 0.354946 rs16921695 8 58084006 rs6995671 C T 0.354946 rs16921695 8 58084055 rs6994658 G C 0.354115 rs16921695 8 58084151 rs1390410 G A 0.354409 rs16921695 8 58087231 rs7841086 C A 0.354115 rs16921695 8 58095884 rs12682137 G A 0.353923 rs16921695 8 62003453 rs1367972 A G 0.551538 500K_AFFYQC_GLOBAL,InfiniumFP3_Final_GLOBAL,i500K_AFFY_FP_GLOBAL_REV2_1__FPGLOBAL_POOL00015,i500K_AFFY_FP_SD_042606_5_ 8 71012811 rs1106334 A G 0.392887 AffyBchipRe-Repool_3_,SQNM_1CHIP_FingerprintAssays,SQNM_1CHIP_on_affy,SQNM_FP_BCHIP_500K_GLOBAL 8 124440174 rs6999234 A G 0.40301 8 124442187 rs13278992 A G 0.403589 rs6999234 8 124444496 rs10447969 A G 0.40399 rs6999234 8 124445269 rs11786724 C G 0.40399 rs6999234 8 124448736 rs7014678 A G 0.401343 rs6999234 8 124449466 rs3824250 C T 0.404246 rs6999234 8 124449672 rs11991520 T G 0.405 rs6999234 8 124450364 rs3765212 G T 0.404742 rs6999234 8 124453662 rs13269287 T C 0.402917 rs6999234 fluidigm_96plex_v1 8 124453799 rs1045270 A G 0.40399 rs6999234 8 124453979 rs1045284 T C 0.40367 rs6999234 8 124454007 rs1045291 T C 0.40399 rs6999234 8 124460546 rs13265801 A G 0.40391 rs6999234 8 124461074 rs3824253 T G 0.40399 rs6999234 fluidigm_96plex_v1 8 124463480 rs13278697 G A 0.402743 rs6999234 8 137814585 rs2649130 G A 0.640468 8 137814742 rs2649129 G A 0.639214 rs2649130 8 137815685 rs2649127 T C 0.638935 rs2649130 8 137815729 rs2649126 G A 0.639051 rs2649130 8 137817574 rs2582454 C T 0.638935 rs2649130 8 137818388 rs2649123 T G 0.639283 rs2649130 fluidigm_96plex_v1 8 137825180 rs2613815 G A 0.641015 rs2649130 8 137826173 rs2610127 C T 0.641015 rs2649130 8 137826900 rs2613817 G T 0.641015 rs2649130 8 137828862 rs2582447 A G 0.64166 rs2649130 8 137829950 rs1979813 G T 0.641132 rs2649130 8 137830784 rs2582444 C T 0.64125 rs2649130 8 137833388 rs2582437 G A 0.641015 rs2649130 8 137833740 rs2582435 A G 0.634827 rs2649130 8 141461062 rs3735803 G A 0.475829 GLOBAL_Affy_EXFP3 9 77172644 rs912201 G A 0.473772 9 77174230 rs10869421 A G 0.473378 rs912201 9 77175017 rs965897 G T 0.474188 rs912201 fluidigm_96plex_v1 9 77176234 rs1323361 T C 0.473815 rs912201 9 77176391 rs7467032 A G 0.473772 rs912201 9 77177142 rs955433 G A 0.474231 rs912201 9 77177648 rs972902 A G 0.473815 rs912201 9 90062823 rs12682834 A G 0.617623 500K_AFFYQC_GLOBAL,i500K_AFFY_FP_GLOBAL_REV2_1__FPGLOBAL_POOL00015,i500K_AFFY_FP_SD_042606_5_ 9 115950706 rs10435864 A C 0.497061 fluidigm_96plex_v1 9 117908721 rs1000110 C T 0.455882 ILMN_OMNI_FP 9 127906190 rs7024471 T C 0.443475 9 127906359 rs7024631 T C 0.442964 rs7024471 9 127907917 rs4838247 T C 0.443475 rs7024471 9 127908306 rs2113352 T G 0.442548 rs7024471 9 127910307 rs1549314 T G 0.442964 rs7024471 fluidigm_96plex_v1 9 127910498 rs1048251 G T 0.446728 rs7024471 9 127912316 rs7869453 G A 0.443096 rs7024471 9 127913764 rs7019234 A G 0.443428 rs7024471 9 127913837 rs7019470 C T 0.443475 rs7024471 9 127915947 rs2271746 G A 0.052632 GLOBAL_Affy_EXFP3 9 127951863 rs466994 G A 0.444306 rs7024471 10 3202065 rs4242746 T C 0.631864 GLOBAL_Affy_EXFP3 10 6001696 rs3136618 C T 0.509144 InfiniumFP3_Final_GLOBAL 10 29932918 rs2488689 G A 0.474937 500K_AFFYQC_GLOBAL,i500K_AFFY_FP_GLOBAL_REV2_1__FPGLOBAL_POOL00015,i500K_AFFY_FP_SD_042606_5_ 10 59947231 rs1199103 A G 0.449667 10 59950234 rs1199096 G A 0.447631 rs1199103 10 59958956 rs1769044 C A 0.449583 rs1199103 10 59964142 rs2653505 C T 0.448835 rs1199103 10 59970391 rs2486491 G A 0.448462 rs1199103 10 59972453 rs2153281 G T 0.451883 rs1199103 10 59977161 rs2590307 C T 0.447083 rs1199103 10 59980652 rs2790242 G A 0.448462 rs1199103 10 59986383 rs2590313 C T 0.448333 rs1199103 10 59997926 rs2790216 G A 0.449209 rs1199103 10 59999323 rs2253192 A G 0.448462 rs1199103 10 60012231 rs2590339 T C 0.448462 rs1199103 fluidigm_96plex_v1 10 60028507 rs2790170 G A 0.44796 rs1199103 10 60035372 rs2790179 T C 0.447544 rs1199103 10 60036815 rs2254775 A G 0.448835 rs1199103 10 60039877 rs2790182 G A 0.448878 rs1199103 10 60042972 rs1867573 A G 0.448878 rs1199103 10 75632760 rs2675671 C T 0.26143 GLOBAL_Affy_EXFP3 10 97137105 rs1536556 A G 0.415628 InfiniumFP3_Final_GLOBAL 10 102104521 rs735877 C T 0.474853 InfiniumFP3_Final_GLOBAL 10 125673547 rs4329614 T G 0.478768 500K_AFFYQC_GLOBAL 10 129200964 rs11017876 G A 0.228188 AffyBchipRe-Repool_3_,SQNM_1CHIP_FingerprintAssays,SQNM_1CHIP_on_affy,SQNM_FP_BCHIP_500K_GLOBAL 10 129652787 rs1000797 G A 0.154742 ILMN_OMNI_FP 11 4185595 rs979942 T G 0.435578 InfiniumFP3_Final_GLOBAL 11 4562947 rs2641414 G T 0.371464 AffyBchipRe-Repool_3_,SQNM_FP_BCHIP_500K_GLOBAL 11 14246296 rs1025412 G A 0.561018 500K_AFFYQC_GLOBAL,ILMN_OMNI_FP,InfiniumFP3_Final_GLOBAL,i500K_AFFY_FP_GLOBAL_REV2_1__FPGLOBAL_POOL00015,i500K_AFFY_FP_SD_042606_5_ 11 33118888 rs10836021 G T 0.484114 11 33128256 rs6484648 G T 0.485343 rs10836021 fluidigm_96plex_v1 11 33136661 rs396518 C T 0.483292 rs10836021 11 33150253 rs2474870 T C 0.482959 rs10836021 11 33152074 rs385132 T C 0.482485 rs10836021 11 33162009 rs1028564 A G 0.483333 rs10836021 fluidigm_96plex_v1 11 33166062 rs10836026 T G 0.4825 rs10836021 11 33169687 rs10836028 C A 0.483361 rs10836021 11 33170853 rs7951995 A G 0.482945 rs10836021 11 33183017 rs3736213 A G 0.483375 rs10836021 11 33189195 rs7928487 G A 0.484087 rs10836021 11 33202683 rs10836036 G A 0.482113 rs10836021 11 33204159 rs4756121 G C 0.482959 rs10836021 11 34904399 rs2288667 C T 0.589583 11 34906562 rs1998603 G C 0.58936 rs2288667 fluidigm_96plex_v1 11 34912289 rs2915224 T A 0.58936 rs2288667 11 34913164 rs2985389 C G 0.589018 rs2288667 11 34914360 rs2915222 T C 0.589434 rs2288667 11 34916484 rs1326940 A G 0.58936 rs2288667 11 34916710 rs1326941 A G 0.586975 rs2288667 11 99506539 rs676086 T C 0.543896 11 99507808 rs11220773 C G 0.542881 rs676086 11 99512256 rs7949294 C T 0.542917 rs676086 11 99512311 rs7949313 C T 0.5425 rs676086 fluidigm_96plex_v1 11 99512337 rs7935457 A G 0.5425 rs676086 11 99512554 rs1690812 C G 0.542048 rs676086 11 99514093 rs606803 A T 0.543225 rs676086 11 99514868 rs609996 T C 0.543677 rs676086 11 99516815 rs665801 C T 0.543261 rs676086 11 99516943 rs595724 T G 0.542917 rs676086 11 110697305 rs120434 C G 0.46675 A1GLOBAL_100K_AFFYFP_4pools,i100K_AFFY_FP_SD_GLOBAL 11 124115143 rs2466660 G C 0.443656 11 124115370 rs2512276 C G 0.442643 rs2466660 fluidigm_96plex_v1 11 124115634 rs12289384 A G 0.442643 rs2466660 11 124119766 rs2466702 A G 0.442132 rs2466660 11 124121402 rs2466706 A C 0.442643 rs2466660 11 124121853 rs2512241 T A 0.443012 rs2466660 11 124122019 rs2512242 T C 0.440806 rs2466660 11 124125733 rs2512196 A G 0.44218 rs2466660 11 124129347 rs2512186 T A 0.440981 rs2466660 11 124134030 rs12574995 A G 0.440586 rs2466660 11 124134245 rs2512172 T C 0.434983 rs2466660 11 124134268 rs2512170 A T 0.440932 rs2466660 11 124134350 rs2466635 G A 0.440486 rs2466660 11 124134552 rs2466636 C T 0.441618 rs2466660 11 124134743 rs2466637 G A 0.442035 rs2466660 11 124135438 rs2512167 G A 0.439983 rs2466660 11 124135481 rs2466701 C T 0.441324 rs2466660 11 124135989 rs2466700 A G 0.441764 rs2466660 11 124136223 rs2512164 G A 0.441764 rs2466660 12 12967127 rs1051374 C T 0.379468 GLOBAL_Affy_EXFP3,fluidigm_96plex_v1 12 12967264 rs3741826 C G 0.378851 rs1051374 12 47761212 rs58616 G A 0.355417 A1GLOBAL_100K_AFFYFP_4pools,i100K_AFFY_FP_SD_GLOBAL 12 55969963 rs1896037 A G 0.52875 12 55974324 rs10876818 C A 0.530366 rs1896037 12 55975016 rs11171579 C T 0.530366 rs1896037 12 55975963 rs10783760 G A 0.530833 rs1896037 12 55978465 rs10876820 T C 0.530936 rs1896037 12 55978970 rs11171582 A G 0.530366 rs1896037 12 55980274 rs10876823 T C 0.530341 rs1896037 12 68195095 rs10748087 C G 0.479149 500K_AFFYQC_GLOBAL,i500K_AFFY_FP_SD_042606_5_ 12 97639144 rs1012315 A G 0.566667 ILMN_OMNI_FP,InfiniumFP3_Final_GLOBAL 12 103298517 rs1522307 A G 0.458403 A1GLOBAL_100K_AFFYFP_4pools,i100K_AFFY_FP_SD_GLOBAL 13 35252882 rs9572094 T C 0.425957 AffyBchipRe-Repool_3_,SQNM_1CHIP_FingerprintAssays,SQNM_1CHIP_on_affy,SQNM_FP_BCHIP_500K_GLOBAL 13 37804353 rs1408229 A C 0.533666 500K_AFFYQC_GLOBAL,i500K_AFFY_FP_GLOBAL_REV2_1__FPGLOBAL_POOL00015,i500K_AFFY_FP_SD_042606_5_ 13 45090478 rs1336163 A C 0.409583 InfiniumFP3_Final_GLOBAL 13 48671081 rs1571256 A G 0.424709 A1GLOBAL_100K_AFFYFP_4pools,ILMN_OMNI_FP,i100K_AFFY_FP_SD_GLOBAL 13 54615364 rs17089192 A C 0.180532 AffyBchipRe-Repool_3_,SQNM_FP_BCHIP_500K_GLOBAL 13 55916778 rs564891 A T 0.579167 13 55916894 rs563986 C A 0.580968 rs564891 13 55917516 rs558344 T C 0.578203 rs564891 13 55920686 rs1436698 C T 0.5798 rs564891 13 55936485 rs1657216 A G 0.578619 rs564891 13 55937194 rs3105047 C A 0.579167 rs564891 fluidigm_96plex_v1 13 55937333 rs3124427 A G 0.577731 rs564891 13 55940168 rs937610 G A 0.577212 rs564891 13 55940381 rs1697505 A G 0.577212 rs564891 13 55948790 rs3105087 T C 0.578969 rs564891 13 55950495 rs3105085 T C 0.579035 rs564891 13 79766188 rs2988039 A G 0.560316 i500K_AFFY_FP_GLOBAL_REV2_1__FPGLOBAL_POOL00015 13 79887237 rs6563098 T C 0.448376 13 79892722 rs3818563 T C 0.449251 rs6563098 13 79894736 rs3187338 C T 0.45 rs6563098 13 79910118 rs9545076 G A 0.451599 rs6563098 13 79915389 rs7981067 G T 0.448406 rs6563098 13 79929326 rs9530901 G A 0.449167 rs6563098 13 79931871 rs2057573 G T 0.449667 rs6563098 13 79933284 rs7332913 G A 0.450628 rs6563098 13 79948683 rs4146473 C T 0.45 rs6563098 fluidigm_96plex_v1 13 79957113 rs6563100 A G 0.451372 rs6563098 13 79959121 rs7329331 G T 0.448376 rs6563098 13 83597934 rs2639486 A T 0.570657 i500K_AFFY_FP_GLOBAL_REV2_1__FPGLOBAL_POOL00015,i500K_AFFY_FP_SD_042606_5_ 13 113773159 rs6046 G A 0.137946 SQNM_CARe_iSelect_FingerprintAssays 14 24806800 rs1950501 G C 0.427621 A1GLOBAL_100K_AFFYFP_4pools,i100K_AFFY_FP_SD_GLOBAL 14 32438484 rs1952966 G A 0.531198 A1GLOBAL_100K_AFFYFP_4pools,i100K_AFFY_FP_SD_GLOBAL 14 40896108 rs1000203 T C 0.103139 ILMN_OMNI_FP 14 61643045 rs4902033 C A 0.448376 AffyBchipRe-Repool_3_,SQNM_FP_BCHIP_500K_GLOBAL 14 66972976 rs7160519 C T 0.494597 14 66974474 rs928553 T C 0.496259 rs7160519 14 66977388 rs17827735 T G 0.485869 14 66979493 rs2319387 T C 0.496675 rs7160519 14 66986144 rs1379413 A G 0.495008 rs7160519 14 66999273 rs13379248 A G 0.484206 rs17827735 14 67013895 rs7140237 T C 0.494592 rs7160519 14 67015554 rs8012737 A G 0.494162 rs7160519 14 67028833 rs7155157 G A 0.495424 rs7160519 14 67032070 rs7146849 T C 0.484206 rs17827735 14 67035486 rs7142929 A G 0.495004 rs7160519 14 67035646 rs7143617 G T 0.495826 rs7160519 14 67036750 rs7149352 A C 0.491213 rs7160519 14 67040601 rs8004106 A G 0.484206 rs17827735 14 67041440 rs10133641 T C 0.49374 rs7160519 14 67042413 rs7153313 C A 0.494181 rs7160519 14 67042872 rs12590209 G T 0.484206 rs17827735 14 67046560 rs7157828 T C 0.485037 rs17827735 14 67054242 rs10146431 G A 0.495809 rs7160519 14 67062010 rs6573688 A G 0.48418 rs17827735 14 67073449 rs8021202 G A 0.484596 rs17827735 14 67086676 rs8015958 G T 0.484206 rs17827735 fluidigm_96plex_v1 14 67091641 rs10135254 C T 0.484609 rs17827735 14 67108386 rs1952069 G A 0.483333 rs17827735 14 67117500 rs6573693 G T 0.495008 rs7160519 14 67122022 rs8018414 C A 0.48538 rs17827735 14 67124785 rs8011027 C T 0.494992 rs7160519 14 67128804 rs7152601 T C 0.495424 rs7160519 fluidigm_96plex_v1 14 67129438 rs4605098 G A 0.49457 rs7160519 14 67140676 rs10139822 G A 0.494592 rs7160519 14 67147073 rs4294753 A C 0.49792 rs7160519 14 67147816 rs3759753 T C 0.494592 rs7160519 14 67148939 rs9783601 T C 0.483361 rs17827735 14 67150764 rs6573706 T A 0.484206 rs17827735 14 67156181 rs8021356 G T 0.495012 rs7160519 14 67158995 rs6573707 A G 0.483736 rs17827735 14 67159922 rs6573709 C T 0.484975 rs17827735 14 67161341 rs7157740 A G 0.484206 rs17827735 14 67164083 rs7154017 A C 0.482959 rs17827735 14 67164760 rs1885198 C T 0.483306 rs17827735 14 67169471 rs10130206 A G 0.484583 rs17827735 14 67177686 rs6573711 A G 0.48414 rs17827735 14 68773353 rs2180770 G A 0.392491 A1GLOBAL_100K_AFFYFP_4pools,i100K_AFFY_FP_SD_GLOBAL 14 71050892 rs11158867 A G 0.547382 500K_AFFYQC_GLOBAL,i500K_AFFY_FP_GLOBAL_REV2_1__FPGLOBAL_POOL00015,i500K_AFFY_FP_SD_042606_5_ 14 73138189 rs1060570 C A 0.491681 InfiniumFP3_Final_GLOBAL 14 74428445 rs8500 G A 0.293333 fluidigm_96plex_v1 14 96103099 rs4905366 A G 0.376667 AffyBchipRe-Repool_3_,SQNM_1CHIP_FingerprintAssays,SQNM_1CHIP_on_affy,SQNM_FP_BCHIP_500K_GLOBAL 14 102568367 rs8005905 T A 0.740989 GLOBAL_Affy_EXFP3 14 105478102 rs3803294 G A 0.313333 GLOBAL_Affy_EXFP3 15 27890491 rs1871017 G T 0.574459 InfiniumFP3_Final_GLOBAL 15 37026565 rs1037439 A G 0.302083 ILMN_OMNI_FP 15 47873549 rs4775699 C T 0.296296 AffyBchipRe-Repool_3_,SQNM_1CHIP_FingerprintAssays,SQNM_1CHIP_on_affy,SQNM_FP_BCHIP_500K_GLOBAL 15 58723675 rs1800588 C T 0.451342 SQNM_CARe_iSelect_FingerprintAssays 15 93844762 rs12909691 C T 0.445878 500K_AFFYQC_GLOBAL,i500K_AFFY_FP_GLOBAL_REV2_1__FPGLOBAL_POOL00015,i500K_AFFY_FP_SD_042606_5_ 16 3811556 rs886528 A G 0.450337 InfiniumFP3_Final_GLOBAL 16 6747139 rs1000192 G A 0.06167 ILMN_OMNI_FP 16 51098427 rs1528601 G C 0.547421 AffyBchipRe-Repool_3_,SQNM_1CHIP_FingerprintAssays,SQNM_1CHIP_on_affy,SQNM_FP_BCHIP_500K_GLOBAL 16 56994528 rs17231506 C T 0.183566 SQNM_CARe_iSelect_FingerprintAssays 16 56994894 rs4783961 G A 0.399418 SQNM_CARe_iSelect_FingerprintAssays 16 56995236 rs1800775 C A 0.55059 SQNM_CARe_iSelect_FingerprintAssays 16 57786711 rs2965798 C T 0.386345 GLOBAL_Affy_EXFP3 16 58743454 rs30842 A C 0.779633 GLOBAL_Affy_EXFP3 16 75281964 rs1862737 A C 0.505828 InfiniumFP3_Final_GLOBAL 16 81816733 rs8045964 C T 0.392263 500K_AFFYQC_GLOBAL,i500K_AFFY_FP_GLOBAL_REV2_1__FPGLOBAL_POOL00015,i500K_AFFY_FP_SD_042606_5_ 17 4172943 rs1045738 C A 0.545757 fluidigm_96plex_v1 17 4175846 rs1437808 C T 0.544807 rs1045738 fluidigm_96plex_v1 17 19809953 rs203466 C G 0.416874 17 19816898 rs203458 A C 0.413373 rs203466 17 19818338 rs203457 C A 0.417221 rs203466 17 19818601 rs119672 A G 0.41806 rs203466 17 19828728 rs203481 C T 0.417569 rs203466 17 19831819 rs203477 A C 0.416805 rs203466 17 19837130 rs850623 C T 0.416389 rs203466 17 19845769 rs1479129 A G 0.417221 rs203466 17 19851875 rs169412 G T 0.416459 rs203466 17 19861458 rs2108978 C T 0.418478 rs203466 fluidigm_96plex_v1 17 20851735 rs11655512 A G 0.175 SQNM_1CHIP_FingerprintAssays,SQNM_1CHIP_on_affy 17 43131480 rs4793172 A T 0.628333 SQNM_1CHIP_FingerprintAssays,SQNM_1CHIP_on_affy 17 49567749 rs12603818 T C 0.449495 500K_AFFYQC_GLOBAL 17 61550529 rs1800764 C T 0.407423 SQNM_CARe_iSelect_FingerprintAssays 17 61873307 rs2665840 A G 0.368443 17 61892862 rs2247435 G A 0.36783 rs2665840 17 61908556 rs13030 C T 0.368333 rs2665840 fluidigm_96plex_v1 17 72780491 rs10775365 G A 0.309068 ILMN_OMNI_FP 17 77790135 rs2587507 T C 0.584519 fluidigm_96plex_v1 17 79574124 rs11652797 G A 0.349543 fluidigm_96plex_v1 17 79574714 rs7222241 G C 0.348296 rs11652797 17 79579248 rs4074916 G A 0.350459 rs11652797 17 79589242 rs6565604 A G 0.349834 rs11652797 18 4005122 rs1000929 T C 0.202749 ILMN_OMNI_FP 18 12718593 rs2302768 A G 0.288157 fluidigm_96plex_v1 18 38231941 rs9945502 A C 0.451331 18 38233779 rs11660626 G T 0.451747 rs9945502 18 38236278 rs1595271 G A 0.451787 rs9945502 fluidigm_96plex_v1 18 38246846 rs7238304 C T 0.451291 rs9945502 18 38247490 rs10468948 G C 0.451372 rs9945502 18 38247872 rs9304229 G T 0.451787 rs9945502 fluidigm_96plex_v1 18 38250899 rs7236371 T C 0.451787 rs9945502 18 38253049 rs9956432 A G 0.45 rs9945502 18 38253381 rs9956815 C T 0.45246 rs9945502 18 38253818 rs7228517 C T 0.451787 rs9945502 18 41559321 rs7229587 C G 0.708819 AffyBchipRe-Repool_3_,SQNM_FP_BCHIP_500K_GLOBAL 18 51705700 rs656306 C A 0.531513 A1GLOBAL_100K_AFFYFP_4pools,i100K_AFFY_FP_SD_GLOBAL 18 58039276 rs2229616 C T 0.02531 SQNM_CARe_iSelect_FingerprintAssays 18 77894844 rs3744877 G A 0.389859 fluidigm_96plex_v1 19 29567134 rs1549944 T C 0.514559 A1GLOBAL_100K_AFFYFP_4pools,i100K_AFFY_FP_SD_GLOBAL 19 29820105 rs10423259 G A 0.462178 19 29820560 rs8102393 T C 0.463009 rs10423259 19 29824307 rs8107784 C T 0.464047 rs10423259 19 29829429 rs10401431 A G 0.4625 rs10423259 19 29830629 rs17773922 T C 0.464672 rs10423259 19 29831541 rs10415713 C T 0.464672 rs10423259 19 29832331 rs10423829 G C 0.464197 rs10423259 19 29832398 rs10425546 C T 0.464256 rs10423259 19 29832755 rs10406567 T C 0.465919 rs10423259 19 29838791 rs8112403 A G 0.464256 rs10423259 19 29847388 rs7254854 G A 0.465445 rs10423259 19 29849954 rs7253264 A G 0.465474 rs10423259 19 29851078 rs4517902 A C 0.465474 rs10423259 fluidigm_96plex_v1 19 29851162 rs4517903 A C 0.465058 rs10423259 19 29853296 rs4805371 C T 0.465862 rs10423259 19 36727365 rs2070132 G A 0.377295 fluidigm_96plex_v1 19 38872778 rs1131182 C T 0.087275 GLOBAL_Affy_EXFP3 19 49518484 rs753307 C T 0.411887 fluidigm_96plex_v1 19 58774071 rs260462 A G 0.538847 InfiniumFP3_Final_GLOBAL 20 5261132 rs6038115 G A 0.609492 500K_AFFYQC_GLOBAL,i500K_AFFY_FP_GLOBAL_REV2_1__FPGLOBAL_POOL00015,i500K_AFFY_FP_SD_042606_5_ 20 8817665 rs6077434 C T 0.360649 20 8818022 rs6086624 C T 0.360649 rs6077434 20 8818700 rs6140740 T A 0.360649 rs6077434 20 8819112 rs6140742 G C 0.361065 rs6077434 fluidigm_96plex_v1 20 8819136 rs11698656 C T 0.360765 rs6077434 20 8820280 rs2179475 C G 0.361065 rs6077434 20 8822431 rs12624809 G C 0.361065 rs6077434 20 8822723 rs6140753 G A 0.360233 rs6077434 20 8822931 rs6086632 T C 0.361738 rs6077434 20 16223957 rs1000121 T C 0.437448 ILMN_OMNI_FP 20 35865054 rs4608 C T 0.69 20 36599904 rs1000158 G A 0.210067 ILMN_OMNI_FP 20 44352620 rs6017667 G A 0.563545 20 44352740 rs1487317 G A 0.561667 rs6017667 20 44354372 rs6032474 G A 0.561564 rs6017667 20 44354538 rs6104310 C T 0.561513 rs6017667 fluidigm_96plex_v1 20 44355180 rs761810 A G 0.561513 rs6017667 20 44355220 rs761809 A G 0.561513 rs6017667 20 44361491 rs457153 A G 0.561615 rs6017667 20 44362749 rs457168 G T 0.561713 rs6017667 20 44364020 rs459011 A G 0.560669 rs6017667 20 44371446 rs462202 G A 0.56198 rs6017667 20 44371905 rs467129 T G 0.56198 rs6017667 20 44372005 rs459681 C T 0.56198 rs6017667 20 47831904 rs6019687 G T 0.599917 20 47842853 rs238162 C T 0.598504 rs6019687 20 47850182 rs238148 C T 0.598504 rs6019687 fluidigm_96plex_v1 20 48301146 rs6512586 G A 0.428214 500K_AFFYQC_GLOBAL,InfiniumFP3_Final_GLOBAL,i500K_AFFY_FP_GLOBAL_REV2_1__FPGLOBAL_POOL00015,i500K_AFFY_FP_SD_042606_5_ 21 34433051 rs1000005 G C 0.544057 ILMN_OMNI_FP 21 38934599 rs1000026 C T 0.449324 ILMN_OMNI_FP 22 19678655 rs1015939 C T 0.298658 ILMN_OMNI_FP 22 29414001 rs2347790 A G 0.404821 A1GLOBAL_100K_AFFYFP_4pools,i100K_AFFY_FP_SD_GLOBAL 22 33229830 rs242076 A G 0.554863 ILMN_OMNI_FP,SQNM_1CHIP_FingerprintAssays,SQNM_1CHIP_on_affy 22 38273749 rs9466 T C 0.393697 fluidigm_96plex_v1 X 320580 rs6603251 T C 0.706 AffyBchipRe-Repool_3_,SQNM_1CHIP_FingerprintAssays,SQNM_1CHIP_on_affy,SQNM_FP_BCHIP_500K_GLOBAL X 65604855 rs5964522 T A 0.505874 X 65606556 rs2840240 C G 0.50731 rs5964522 fluidigm_96plex_v1 X 65611304 rs1926341 C T 0.506503 rs5964522 X 65615925 rs5919086 A G 0.507299 rs5964522 X 65625291 rs4827371 G C 0.508053 rs5964522 X 65628566 rs5965190 C A 0.50656 rs5964522 X 65633075 rs6525067 C G 0.508041 rs5964522 X 90596159 rs525869 T C 0.506623 fluidigm_96plex_v1 X 90598226 rs574960 T C 0.519321 rs525869 X 90598955 rs568416 T C 0.503333 rs525869 X 90599072 rs589317 A T 0.504444 rs525869 X 116603406 rs2040962 T C 0.774054 fluidigm_96plex_v1