This folder contains enhancer-gene prediction results generated from ten 10x multiome datasets: three K562 datasets, GM12878, HCT116, Jurkat, WTC11, PBMC, BMMC, and pancreatic islets. Predictions were made using 14 different models: scE2G_multiome, scE2G_ATAC, ARC-E2G, ABC model, Kendall Correlation, STARE, SCENT, SnapATAC, Signac, Cicero, FigR, ScenicPlus, DIRECT-NET, and ArchR.

The results for ARC-E2G, ABC model, and Kendall Correlation are included within the scE2G_multiome prediction files.

File naming follows this pattern: [Dataset]/[Model]/pairs.E2G.[model.]res.[CellType.]tsv.gz

For more information, refer to Sheth, Qiu, et al. 2025.