SNP	CHR	BP	GENPOS	ALLELE1	ALLELE0	A1FREQ	INFO	CHISQ_LINREG	P_LINREG	BETA	SE	CHISQ_BOLT_LMM_INF	P_BOLT_LMM_INF	CHISQ_BOLT_LMM	P_BOLT_LMM	POS
.	1	116784282	1.47949	C	T	0.968484	0.980927	65.213	6.7e-16	-0.0269443	0.00329376	66.9189	2.8e-16	68.4153	1.3e-16	1116784282
.	2	22412890	0.426	A	G	0.996572	0.957841	29.1141	6.8e-08	-0.0566429	0.00991936	32.608	1.1e-08	32.9124	9.6e-09	2022412890
.	2	36993471	0.597258	A	C	0.707884	0.994777	30.4826	3.4e-08	0.00713529	0.00126059	32.0389	1.5e-08	32.0988	1.5e-08	2036993471
.	2	40470477	0.643405	T	C	0.811561	0.99369	58.8741	1.7e-14	-0.0112539	0.00146597	58.9325	1.6e-14	59.6234	1.1e-14	2040470477
.	2	230175447	2.49576	C	T	0.874631	0.994709	302.344	1e-67	-0.0301273	0.00172802	303.965	4.5e-68	306.043	1.6e-68	2230175447
.	3	28034136	0.497144	C	G	0.531879	0.98656	43.5216	4.2e-11	-0.0078186	0.00115167	46.0899	1.1e-11	46.1986	1.1e-11	3028034136
.	3	196331470	2.25083	T	A	0.99895	0.673316	34.8467	3.6e-09	-0.126912	0.0217698	33.9855	5.6e-09	34.4096	4.5e-09	3196331470
.	5	96785666	1.08776	T	TA	0.271042	0.986664	331.853	3.8e-74	0.0241105	0.00129279	347.82	1.3e-77	350.88	2.7e-78	5096785666
.	6	90296024	1.01306	G	T	0.821344	0.98141	52.5168	4.3e-13	0.0109024	0.00148914	53.6004	2.5e-13	55.392	9.9e-14	6090296024
.	8	23217508	0.538626	G	A	0.746425	0.982856	58.8731	1.7e-14	-0.0103168	0.00132505	60.6218	6.9e-15	58.4378	2.1e-14	8023217508
.	9	133279427	1.60895	T	C	0.184924	0.999842	30.7401	3e-08	0.00859764	0.00147604	33.9282	5.7e-09	35.0445	3.2e-09	9133279427
.	9	137929605	1.74135	T	G	0.998567	0.890261	101.99	5.6e-24	-0.162382	0.0160283	102.636	4e-24	102.174	5.1e-24	9137929605
.	12	3962735	0.0969091	T	G	0.565944	0.998472	30.2908	3.7e-08	-0.00620969	0.00115383	28.9641	7.4e-08	30.0906	4.1e-08	12003962735
.	12	6787152	0.173345	T	C	0.854925	0.999656	236.405	2.4e-53	-0.0252466	0.00162368	241.771	1.6e-54	247.463	9.3e-56	12006787152
.	12	10426586	0.237086	C	T	0.127215	0.966879	33.9737	5.6e-09	0.0104885	0.00174199	36.2524	1.7e-09	37.4125	9.6e-10	12010426586
.	12	122871929	1.46904	C	T	0.984442	0.9463	31.4331	2.1e-08	-0.0274488	0.00473894	33.5494	6.9e-09	33.8579	5.9e-09	12122871929
.	15	74044292	0.881429	T	C	0.539443	0.997387	131.724	1.7e-30	0.013562	0.0011495	139.197	4e-32	138.779	4.9e-32	15074044292
.	16	57038803	0.750488	C	T	0.899518	0.995395	31.7581	1.7e-08	-0.0107393	0.00190683	31.7192	1.8e-08	32.9787	9.3e-09	16057038803
.	17	35243422	0.58954	C	A	0.520478	0.994418	369.054	3e-82	-0.0222717	0.00114667	377.252	4.9e-84	385.597	7.5e-86	17035243422
.	17	40639691	0.66346	T	C	0.309328	0.977275	50.0241	1.5e-12	-0.00887923	0.0012498	50.4741	1.2e-12	49.2945	2.2e-12	17040639691
.	19	16364577	0.392823	G	A	0.31335	0.981623	43.0165	5.4e-11	0.00815247	0.00124279	43.0314	5.4e-11	42.0475	8.9e-11	19016364577
.	19	17395050	0.409552	C	T	0.170474	0.999847	34.6523	3.9e-09	0.00865931	0.00152038	32.4387	1.2e-08	32.9164	9.6e-09	19017395050
.	21	41362064	0.526424	G	A	0.92581	0.987631	285.124	5.7e-64	-0.0372389	0.00219067	288.962	8.4e-65	294.323	5.7e-66	21041362064