This directory contains data from our manuscript analyzing associations between 56 quantitative traits and copy number variants in UK Biobank:

"Influences of rare copy number variation on human complex traits"
Margaux LA Hujoel, Maxwell A Sherman, Alison R Barton, Ronen E Mukamel, Vijay G Sankaran, Chikashi Terao, Po-Ru Loh

- sumstats/ contains BOLT-LMM association analysis results from our primary analyses of up to N~460K individuals who reported European ancestry whose SNP-array data met quality control filters.

1st output column ("SNP"): CNV variant; coded as probe-level, gene-level, or CNV-level; probe-level tests are displayed as {DEL,DUP}_CHR:BP; CNV-level tests are displayed as {DEL,DUP}_CHR:START_END_delta{0,1,2,3}; gene-level tests are displayed as GENE{pLoF,DEL,DUP}. For precise definitions of the probe-level, gene-level, and CNV-level tests, see STAR Methods ("Creating CNV genotypes for association tests")

ALLELE1 = c = "cnv", ALLELE0 = r = "reference"