#
# The MIT License (MIT)
#
# Copyright (c) 2007-2015 Broad Institute
#
# Permission is hereby granted, free of charge, to any person obtaining a copy
# of this software and associated documentation files (the "Software"), to deal
# in the Software without restriction, including without limitation the rights
# to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
# copies of the Software, and to permit persons to whom the Software is
# furnished to do so, subject to the following conditions:
#
# The above copyright notice and this permission notice shall be included in
# all copies or substantial portions of the Software.
#
#
# THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
# IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
# FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
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# THE SOFTWARE.
#

#Specify the properties file by setting the "log4j.configuration" property at runtime.
#e.g. java -jar -Xmx2g -Dlog4j.configuration=log4j_debug.properties igv.jar
log4j.rootLogger=INFO, stdout

log4j.appender.stdout.Target=System.out
log4j.appender.stdout=org.apache.log4j.ConsoleAppender
log4j.appender.stdout.layout=org.apache.log4j.PatternLayout
log4j.appender.stdout.layout.ConversionPattern=%p [%d{ISO8601}]  [%F:%L] [%t]  %m%n

#Don't want to double log, so we aren't using this now
log4j.appender.stderr.Threshold=ERROR
log4j.appender.stderr.Target=System.err
log4j.appender.stderr=org.apache.log4j.ConsoleAppender
log4j.appender.stderr.layout=org.apache.log4j.PatternLayout
log4j.appender.stderr.layout.ConversionPattern=%p [%d{ISO8601}]  [%F:%L] [%t]  %m%n

