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            <void method="setProperty">
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             <string>IGV will query cBio to find genes which interact with the seed genes entered here.</string>
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               <string>Retrieve Network</string>
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               <string>Total Genes: #</string>
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               <object class="com.jformdesigner.model.FormEvent">
                <string>java.awt.event.ActionListener</string>
                <string>actionPerformed</string>
                <string>saveButtonActionPerformed</string>
                <boolean>true</boolean>
               </object>
              </void>
             </object>
             <object class="com.jformdesigner.model.FormLayoutConstraints">
              <class>com.jformdesigner.runtime.GridBagConstraintsEx</class>
              <void method="setProperty">
               <string>gridx</string>
               <int>1</int>
              </void>
              <void method="setProperty">
               <string>gridy</string>
               <int>1</int>
              </void>
             </object>
            </void>
            <void method="add">
             <object class="com.jformdesigner.model.FormComponent">
              <string>javax.swing.JButton</string>
              <void method="setProperty">
               <string>text</string>
               <string>Help</string>
              </void>
              <void method="setProperty">
               <string>visible</string>
               <boolean>false</boolean>
              </void>
              <void property="name">
               <string>helpButton</string>
              </void>
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             <object class="com.jformdesigner.model.FormLayoutConstraints">
              <class>com.jformdesigner.runtime.GridBagConstraintsEx</class>
              <void method="setProperty">
               <string>gridx</string>
               <int>2</int>
              </void>
              <void method="setProperty">
               <string>gridy</string>
               <int>1</int>
              </void>
             </object>
            </void>
           </object>
           <object class="com.jformdesigner.model.FormLayoutConstraints">
            <class>com.jformdesigner.runtime.GridBagConstraintsEx</class>
            <void method="setProperty">
             <string>gridy</string>
             <int>3</int>
            </void>
            <void method="setProperty">
             <string>vAlign</string>
             <int>1</int>
            </void>
           </object>
          </void>
         </object>
         <object class="com.jformdesigner.model.FormLayoutConstraints">
          <null/>
          <void method="setProperty">
           <string>title</string>
           <string>Filter</string>
          </void>
         </object>
        </void>
        <void method="add">
         <object class="com.jformdesigner.model.FormContainer">
          <string>javax.swing.JPanel</string>
          <object class="com.jformdesigner.model.FormLayoutManager">
           <class>com.jformdesigner.runtime.NullLayout</class>
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          <void method="setProperty">
           <string>preferredSize</string>
           <object class="java.awt.Dimension">
            <int>550</int>
            <int>196</int>
           </object>
          </void>
          <void method="setProperty">
           <string>minimumSize</string>
           <object class="java.awt.Dimension">
            <int>550</int>
            <int>196</int>
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          </void>
          <void property="name">
           <string>thresholdsPane</string>
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          <void method="add">
           <object class="com.jformdesigner.model.FormContainer">
            <string>javax.swing.JPanel</string>
            <object class="com.jformdesigner.model.FormLayoutManager">
             <class>com.jformdesigner.runtime.NullLayout</class>
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            <void method="setProperty">
             <string>border</string>
             <object class="javax.swing.border.EtchedBorder">
              <int>1</int>
              <null/>
              <null/>
             </object>
            </void>
            <void property="name">
             <string>contentPanel</string>
            </void>
            <void method="add">
             <object class="com.jformdesigner.model.FormComponent">
              <string>javax.swing.JLabel</string>
              <void method="setProperty">
               <string>text</string>
               <string>Amplification:</string>
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              <void method="setProperty">
               <string>horizontalAlignment</string>
               <int>4</int>
              </void>
              <void method="setProperty">
               <string>labelFor</string>
               <object class="com.jformdesigner.model.FormReference">
                <string>ampInput</string>
               </object>
              </void>
              <void method="setProperty">
               <string>toolTipText</string>
               <string>Amplification score, on a log-normalized scale</string>
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              <void method="setProperty">
               <string>preferredSize</string>
               <object class="java.awt.Dimension">
                <int>90</int>
                <int>18</int>
               </object>
              </void>
              <void property="name">
               <string>label2</string>
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             </object>
             <object class="com.jformdesigner.model.FormLayoutConstraints">
              <class>com.jformdesigner.runtime.NullConstraints</class>
              <void method="setProperty">
               <string>x</string>
               <int>140</int>
              </void>
              <void method="setProperty">
               <string>y</string>
               <int>96</int>
              </void>
              <void method="setProperty">
               <string>height</string>
               <int>18</int>
              </void>
             </object>
            </void>
            <void method="add">
             <object class="com.jformdesigner.model.FormComponent">
              <string>javax.swing.JLabel</string>
              <void method="setProperty">
               <string>text</string>
               <string>Deletion:</string>
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              <void method="setProperty">
               <string>horizontalAlignment</string>
               <int>4</int>
              </void>
              <void method="setProperty">
               <string>labelFor</string>
               <object class="com.jformdesigner.model.FormReference">
                <string>delInput</string>
               </object>
              </void>
              <void method="setProperty">
               <string>toolTipText</string>
               <string>Deletion score, on a log-normalized scale</string>
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              <void method="setProperty">
               <string>preferredSize</string>
               <object class="java.awt.Dimension">
                <int>60</int>
                <int>16</int>
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              </void>
              <void property="name">
               <string>label3</string>
              </void>
             </object>
             <object class="com.jformdesigner.model.FormLayoutConstraints">
              <class>com.jformdesigner.runtime.NullConstraints</class>
              <void method="setProperty">
               <string>x</string>
               <int>360</int>
              </void>
              <void method="setProperty">
               <string>y</string>
               <int>96</int>
              </void>
              <void method="setProperty">
               <string>height</string>
               <int>18</int>
              </void>
             </object>
            </void>
            <void method="add">
             <object class="com.jformdesigner.model.FormComponent">
              <string>javax.swing.JTextField</string>
              <void method="setProperty">
               <string>text</string>
               <string>0.9</string>
              </void>
              <void method="setProperty">
               <string>minimumSize</string>
               <object class="java.awt.Dimension">
                <int>34</int>
                <int>28</int>
               </object>
              </void>
              <void method="setProperty">
               <string>preferredSize</string>
               <object class="java.awt.Dimension">
                <int>45</int>
                <int>28</int>
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              </void>
              <void method="setProperty">
               <string>maximumSize</string>
               <object class="java.awt.Dimension">
                <int>50</int>
                <int>2147483647</int>
               </object>
              </void>
              <void property="name">
               <string>delInput</string>
              </void>
             </object>
             <object class="com.jformdesigner.model.FormLayoutConstraints">
              <class>com.jformdesigner.runtime.NullConstraints</class>
              <void method="setProperty">
               <string>x</string>
               <int>430</int>
              </void>
              <void method="setProperty">
               <string>y</string>
               <int>91</int>
              </void>
             </object>
            </void>
            <void method="add">
             <object class="com.jformdesigner.model.FormComponent">
              <string>javax.swing.JLabel</string>
              <void method="setProperty">
               <string>text</string>
               <string>Up:</string>
              </void>
              <void method="setProperty">
               <string>horizontalAlignment</string>
               <int>4</int>
              </void>
              <void method="setProperty">
               <string>labelFor</string>
               <object class="com.jformdesigner.model.FormReference">
                <string>expUpInput</string>
               </object>
              </void>
              <void method="setProperty">
               <string>toolTipText</string>
               <string>Expression score, log-normalized scale</string>
              </void>
              <void method="setProperty">
               <string>preferredSize</string>
               <object class="java.awt.Dimension">
                <int>100</int>
                <int>18</int>
               </object>
              </void>
              <void property="name">
               <string>label4</string>
              </void>
             </object>
             <object class="com.jformdesigner.model.FormLayoutConstraints">
              <class>com.jformdesigner.runtime.NullConstraints</class>
              <void method="setProperty">
               <string>x</string>
               <int>130</int>
              </void>
              <void method="setProperty">
               <string>y</string>
               <int>168</int>
              </void>
              <void method="setProperty">
               <string>height</string>
               <int>18</int>
              </void>
             </object>
            </void>
            <void method="add">
             <object class="com.jformdesigner.model.FormComponent">
              <string>javax.swing.JTextField</string>
              <void method="setProperty">
               <string>text</string>
               <string>1.0</string>
              </void>
              <void method="setProperty">
               <string>minimumSize</string>
               <object class="java.awt.Dimension">
                <int>34</int>
                <int>28</int>
               </object>
              </void>
              <void method="setProperty">
               <string>preferredSize</string>
               <object class="java.awt.Dimension">
                <int>45</int>
                <int>28</int>
               </object>
              </void>
              <void property="name">
               <string>expUpInput</string>
              </void>
             </object>
             <object class="com.jformdesigner.model.FormLayoutConstraints">
              <class>com.jformdesigner.runtime.NullConstraints</class>
              <void method="setProperty">
               <string>x</string>
               <int>240</int>
              </void>
              <void method="setProperty">
               <string>y</string>
               <int>162</int>
              </void>
             </object>
            </void>
            <void method="add">
             <object class="com.jformdesigner.model.FormComponent">
              <string>javax.swing.JLabel</string>
              <void method="setProperty">
               <string>text</string>
               <string>Down:</string>
              </void>
              <void method="setProperty">
               <string>horizontalAlignment</string>
               <int>4</int>
              </void>
              <void method="setProperty">
               <string>labelFor</string>
               <object class="com.jformdesigner.model.FormReference">
                <string>expDownInput</string>
               </object>
              </void>
              <void method="setProperty">
               <string>toolTipText</string>
               <string>Expression score, log-normalized scale</string>
              </void>
              <void method="setProperty">
               <string>preferredSize</string>
               <object class="java.awt.Dimension">
                <int>120</int>
                <int>16</int>
               </object>
              </void>
              <void property="name">
               <string>label7</string>
              </void>
             </object>
             <object class="com.jformdesigner.model.FormLayoutConstraints">
              <class>com.jformdesigner.runtime.NullConstraints</class>
              <void method="setProperty">
               <string>x</string>
               <int>300</int>
              </void>
              <void method="setProperty">
               <string>y</string>
               <int>168</int>
              </void>
              <void method="setProperty">
               <string>height</string>
               <int>18</int>
              </void>
             </object>
            </void>
            <void method="add">
             <object class="com.jformdesigner.model.FormComponent">
              <string>javax.swing.JTextField</string>
              <void method="setProperty">
               <string>text</string>
               <string>1.0</string>
              </void>
              <void method="setProperty">
               <string>preferredSize</string>
               <object class="java.awt.Dimension">
                <int>45</int>
                <int>28</int>
               </object>
              </void>
              <void method="setProperty">
               <string>minimumSize</string>
               <object class="java.awt.Dimension">
                <int>34</int>
                <int>28</int>
               </object>
              </void>
              <void method="setProperty">
               <string>maximumSize</string>
               <object class="java.awt.Dimension">
                <int>50</int>
                <int>2147483647</int>
               </object>
              </void>
              <void property="name">
               <string>expDownInput</string>
              </void>
             </object>
             <object class="com.jformdesigner.model.FormLayoutConstraints">
              <class>com.jformdesigner.runtime.NullConstraints</class>
              <void method="setProperty">
               <string>x</string>
               <int>430</int>
              </void>
              <void method="setProperty">
               <string>y</string>
               <int>162</int>
              </void>
             </object>
            </void>
            <void method="add">
             <object class="com.jformdesigner.model.FormComponent">
              <string>javax.swing.JTextField</string>
              <void method="setProperty">
               <string>text</string>
               <string>0.9</string>
              </void>
              <void method="setProperty">
               <string>minimumSize</string>
               <object class="java.awt.Dimension">
                <int>34</int>
                <int>28</int>
               </object>
              </void>
              <void method="setProperty">
               <string>preferredSize</string>
               <object class="java.awt.Dimension">
                <int>45</int>
                <int>28</int>
               </object>
              </void>
              <void property="name">
               <string>ampInput</string>
              </void>
             </object>
             <object class="com.jformdesigner.model.FormLayoutConstraints">
              <class>com.jformdesigner.runtime.NullConstraints</class>
              <void method="setProperty">
               <string>x</string>
               <int>240</int>
              </void>
              <void method="setProperty">
               <string>y</string>
               <int>91</int>
              </void>
             </object>
            </void>
            <void method="add">
             <object class="com.jformdesigner.model.FormComponent">
              <string>javax.swing.JLabel</string>
              <void method="setProperty">
               <string>text</string>
               <string>Mutation:</string>
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              <void method="setProperty">
               <string>horizontalAlignment</string>
               <int>4</int>
              </void>
              <void method="setProperty">
               <string>labelFor</string>
               <object class="com.jformdesigner.model.FormReference">
                <string>mutInput</string>
               </object>
              </void>
              <void method="setProperty">
               <string>toolTipText</string>
               <string>Minimum number of mutations found</string>
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              <void method="setProperty">
               <string>preferredSize</string>
               <object class="java.awt.Dimension">
                <int>66</int>
                <int>18</int>
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              </void>
              <void property="name">
               <string>label1</string>
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             <object class="com.jformdesigner.model.FormLayoutConstraints">
              <class>com.jformdesigner.runtime.NullConstraints</class>
              <void method="setProperty">
               <string>x</string>
               <int>50</int>
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              <void method="setProperty">
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               <int>26</int>
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              <void method="setProperty">
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               <int>18</int>
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             </object>
            </void>
            <void method="add">
             <object class="com.jformdesigner.model.FormComponent">
              <string>javax.swing.JTextField</string>
              <void method="setProperty">
               <string>text</string>
               <string>1</string>
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              <void method="setProperty">
               <string>autoscrolls</string>
               <boolean>false</boolean>
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              <void method="setProperty">
               <string>minimumSize</string>
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                <int>28</int>
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              <void method="setProperty">
               <string>preferredSize</string>
               <object class="java.awt.Dimension">
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                <int>28</int>
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              </void>
              <void property="name">
               <string>mutInput</string>
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             <object class="com.jformdesigner.model.FormLayoutConstraints">
              <class>com.jformdesigner.runtime.NullConstraints</class>
              <void method="setProperty">
               <string>x</string>
               <int>240</int>
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              <void method="setProperty">
               <string>y</string>
               <int>21</int>
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             </object>
            </void>
            <void method="add">
             <object class="com.jformdesigner.model.FormComponent">
              <string>javax.swing.JLabel</string>
              <void method="setProperty">
               <string>text</string>
               <string>Copy Number:</string>
              </void>
              <void property="name">
               <string>label6</string>
              </void>
             </object>
             <object class="com.jformdesigner.model.FormLayoutConstraints">
              <class>com.jformdesigner.runtime.NullConstraints</class>
              <void method="setProperty">
               <string>x</string>
               <int>30</int>
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              <void method="setProperty">
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               <int>96</int>
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              <void method="setProperty">
               <string>height</string>
               <int>18</int>
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            </void>
            <void method="add">
             <object class="com.jformdesigner.model.FormComponent">
              <string>javax.swing.JLabel</string>
              <void method="setProperty">
               <string>text</string>
               <string>Expression:</string>
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              <void method="setProperty">
               <string>horizontalAlignment</string>
               <int>4</int>
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              <void property="name">
               <string>label8</string>
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             <object class="com.jformdesigner.model.FormLayoutConstraints">
              <class>com.jformdesigner.runtime.NullConstraints</class>
              <void method="setProperty">
               <string>width</string>
               <int>86</int>
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              <void method="setProperty">
               <string>height</string>
               <int>18</int>
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              <void method="setProperty">
               <string>x</string>
               <int>30</int>
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              <void method="setProperty">
               <string>y</string>
               <int>168</int>
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             </object>
            </void>
            <void method="add">
             <object class="com.jformdesigner.model.FormComponent">
              <string>javax.swing.JSeparator</string>
              <void property="name">
               <string>separator1</string>
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             <object class="com.jformdesigner.model.FormLayoutConstraints">
              <class>com.jformdesigner.runtime.NullConstraints</class>
              <void method="setProperty">
               <string>x</string>
               <int>0</int>
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              <void method="setProperty">
               <string>y</string>
               <int>135</int>
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              <void method="setProperty">
               <string>width</string>
               <int>500</int>
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              <void method="setProperty">
               <string>height</string>
               <int>10</int>
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             </object>
            </void>
            <void method="add">
             <object class="com.jformdesigner.model.FormComponent">
              <string>javax.swing.JSeparator</string>
              <void property="name">
               <string>separator3</string>
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             <object class="com.jformdesigner.model.FormLayoutConstraints">
              <class>com.jformdesigner.runtime.NullConstraints</class>
              <void method="setProperty">
               <string>width</string>
               <int>500</int>
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              <void method="setProperty">
               <string>height</string>
               <int>10</int>
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              <void method="setProperty">
               <string>x</string>
               <int>0</int>
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              <void method="setProperty">
               <string>y</string>
               <int>65</int>
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            <void method="add">
             <object class="com.jformdesigner.model.FormComponent">
              <string>javax.swing.JSeparator</string>
              <void method="setProperty">
               <string>preferredSize</string>
               <object class="java.awt.Dimension">
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                <int>210</int>
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              <void method="setProperty">
               <string>orientation</string>
               <int>1</int>
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              <void property="name">
               <string>separator2</string>
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             <object class="com.jformdesigner.model.FormLayoutConstraints">
              <class>com.jformdesigner.runtime.NullConstraints</class>
              <void method="setProperty">
               <string>x</string>
               <int>120</int>
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              <void method="setProperty">
               <string>y</string>
               <int>0</int>
              </void>
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            </void>
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           <object class="com.jformdesigner.model.FormLayoutConstraints">
            <class>com.jformdesigner.runtime.NullConstraints</class>
            <void method="setProperty">
             <string>x</string>
             <int>12</int>
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            <void method="setProperty">
             <string>y</string>
             <int>80</int>
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            <void method="setProperty">
             <string>width</string>
             <int>500</int>
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            <void method="setProperty">
             <string>height</string>
             <int>210</int>
            </void>
           </object>
          </void>
          <void method="add">
           <object class="com.jformdesigner.model.FormContainer">
            <string>javax.swing.JPanel</string>
            <object class="com.jformdesigner.model.FormLayoutManager">
             <class>com.jformdesigner.runtime.NullLayout</class>
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            <void property="name">
             <string>panel2</string>
            </void>
           </object>
           <object class="com.jformdesigner.model.FormLayoutConstraints">
            <class>com.jformdesigner.runtime.NullConstraints</class>
            <void method="setProperty">
             <string>x</string>
             <int>55</int>
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            <void method="setProperty">
             <string>y</string>
             <int>25</int>
            </void>
           </object>
          </void>
          <void method="add">
           <object class="com.jformdesigner.model.FormComponent">
            <string>javax.swing.JTextArea</string>
            <void method="setProperty">
             <string>text</string>
             <string>Samples are considered to have a given &quot;event&quot; if the value is above the thresholds below.</string>
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            <void method="setProperty">
             <string>editable</string>
             <boolean>false</boolean>
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            <void method="setProperty">
             <string>lineWrap</string>
             <boolean>true</boolean>
            </void>
            <void method="setProperty">
             <string>background</string>
             <object class="com.jformdesigner.model.SwingColor">
              <string>Button.background</string>
             </object>
            </void>
            <void property="name">
             <string>textArea1</string>
            </void>
           </object>
           <object class="com.jformdesigner.model.FormLayoutConstraints">
            <class>com.jformdesigner.runtime.NullConstraints</class>
            <void method="setProperty">
             <string>x</string>
             <int>15</int>
            </void>
            <void method="setProperty">
             <string>y</string>
             <int>10</int>
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            <void method="setProperty">
             <string>width</string>
             <int>430</int>
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            <void method="setProperty">
             <string>height</string>
             <int>40</int>
            </void>
           </object>
          </void>
          <void method="add">
           <object class="com.jformdesigner.model.FormComponent">
            <string>javax.swing.JButton</string>
            <void method="setProperty">
             <string>text</string>
             <string>Reset to Defaults</string>
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            <void property="name">
             <string>resetToDefaultsButton</string>
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            <void method="addEvent">
             <object class="com.jformdesigner.model.FormEvent">
              <string>java.awt.event.ActionListener</string>
              <string>actionPerformed</string>
              <string>resetToDefaultsButtonActionPerformed</string>
              <boolean>true</boolean>
             </object>
            </void>
           </object>
           <object class="com.jformdesigner.model.FormLayoutConstraints">
            <class>com.jformdesigner.runtime.NullConstraints</class>
            <void method="setProperty">
             <string>x</string>
             <int>10</int>
            </void>
            <void method="setProperty">
             <string>y</string>
             <int>50</int>
            </void>
           </object>
          </void>
         </object>
         <object class="com.jformdesigner.model.FormLayoutConstraints">
          <null/>
          <void method="setProperty">
           <string>title</string>
           <string>Thresholds</string>
          </void>
         </object>
        </void>
       </object>
       <object class="com.jformdesigner.model.FormLayoutConstraints">
        <class>java.lang.String</class>
        <void method="setProperty">
         <string>value</string>
         <string>North</string>
        </void>
       </object>
      </void>
      <void property="name">
       <string>this</string>
      </void>
     </object>
     <object class="com.jformdesigner.model.FormLayoutConstraints">
      <null/>
      <void method="setProperty">
       <string>path</string>
       <object class="java.awt.Point">
        <int>0</int>
        <int>0</int>
       </object>
      </void>
      <void method="setProperty">
       <string>size</string>
       <object class="java.awt.Dimension">
        <int>550</int>
        <int>370</int>
       </object>
      </void>
     </object>
    </void>
   </object>
  </void>
 </object>
</java>
