#### Enrichment in phenotype: CNTRL (6 samples)

- 89 / 215 gene sets are upregulated in phenotype CNTRL
- 14 gene sets are significant at FDR < 25%
- 9 gene sets are significantly enriched at nominal pvalue < 1%
- 16 gene sets are significantly enriched at nominal pvalue < 5%
- Snapshot of enrichment results
- Detailed enrichment results in html format
- Detailed enrichment results in excel format (tab delimited text)
- Guide to interpret results

#### Enrichment in phenotype: PTEN (6 samples)

- 126 / 215 gene sets are upregulated in phenotype PTEN
- 15 gene sets are significantly enriched at FDR < 25%
- 6 gene sets are significantly enriched at nominal pvalue < 1%
- 16 gene sets are significantly enriched at nominal pvalue < 5%
- Snapshot of enrichment results
- Detailed enrichment results in html format
- Detailed enrichment results in excel format (tab delimited text)
- Guide to interpret results

#### Dataset details

- The dataset has 13321 features (genes)
- No probe set => gene symbol collapsing was requested, so all 13321 features were used

#### Gene set details

- Gene set size filters (min=15, max=500) resulted in filtering out 111 / 326 gene sets
- The remaining 215 gene sets were used in the analysis
- List of gene sets used and their sizes (restricted to features in the specified dataset)

#### Gene markers for the CNTRL versus PTEN comparison

- The dataset has 13321 features (genes)
- # of markers for phenotype CNTRL: 6444 (48.4% ) with correlation area 46.5%
- # of markers for phenotype PTEN: 6877 (51.6% ) with correlation area 53.5%
- Detailed rank ordered gene list for all features in the dataset
- Heat map and gene list correlation profile for all features in the dataset

#### Global statistics and plots

- Plot of p-values vs. NES
- Global ES histogram

#### Other

- Parameters used for this analysis