#### Enrichment in phenotype: post_treatment (13 samples)

- 125 / 215 gene sets are upregulated in phenotype post_treatment
- 0 gene sets are significant at FDR < 25%
- 0 gene sets are significantly enriched at nominal pvalue < 1%
- 1 gene sets are significantly enriched at nominal pvalue < 5%
- Snapshot of enrichment results
- Detailed enrichment results in html format
- Detailed enrichment results in excel format (tab delimited text)
- Guide to interpret results

#### Enrichment in phenotype: pretreatment (13 samples)

- 90 / 215 gene sets are upregulated in phenotype pretreatment
- 0 gene sets are significantly enriched at FDR < 25%
- 0 gene sets are significantly enriched at nominal pvalue < 1%
- 4 gene sets are significantly enriched at nominal pvalue < 5%
- Snapshot of enrichment results
- Detailed enrichment results in html format
- Detailed enrichment results in excel format (tab delimited text)
- Guide to interpret results

#### Dataset details

- The dataset has 13321 features (genes)
- No probe set => gene symbol collapsing was requested, so all 13321 features were used

#### Gene set details

- Gene set size filters (min=15, max=500) resulted in filtering out 111 / 326 gene sets
- The remaining 215 gene sets were used in the analysis
- List of gene sets used and their sizes (restricted to features in the specified dataset)

#### Gene markers for the post_treatment versus pretreatment comparison

- The dataset has 13321 features (genes)
- # of markers for phenotype post_treatment: 6888 (51.7% ) with correlation area 54.9%
- # of markers for phenotype pretreatment: 6433 (48.3% ) with correlation area 45.1%
- Detailed rank ordered gene list for all features in the dataset
- Heat map and gene list correlation profile for all features in the dataset
- Buttefly plot of significant genes

#### Global statistics and plots

- Plot of p-values vs. NES
- Global ES histogram

#### Other

- Parameters used for this analysis