DatasetLeukemia_collapsed.gct
PhenotypeAML
GeneSetC1.symbols.gmt#chr1p36
Enrichment Score (ES)-0.2355216
Normalized Enrichment Score (NES)-1.0571829
Nominal p-value0.36410257
FDR q-value1.0
FWER p-Value0.996
Table: GSEA Results Summary

PROBEGENE SYMBOLGENE_TITLERANK IN GENE LISTRANK METRIC SCORERESCORE_ENRICHMENT
1CDC2L2CDC2L2
StanfordSource,  GeneCards
cell division cycle 2-like 2771.2320.0186No
2STMN1STMN1
StanfordSource,  GeneCards
stathmin 1/oncoprotein 181711.0860.0324No
3ID3ID3
StanfordSource,  GeneCards
inhibitor of DNA binding 3, dominant negative helix-loop-helix protein3150.9530.0384No
4HNRPRHNRPR
StanfordSource,  GeneCards
heterogeneous nuclear ribonucleoprotein R4650.8700.0420No
5TNFRSF14TNFRSF14
StanfordSource,  GeneCards
tumor necrosis factor receptor superfamily, member 14 (herpesvirus entry mediator)6260.8020.0430No
6DFFBDFFB
StanfordSource,  GeneCards
DNA fragmentation factor, 40kDa, beta polypeptide (caspase-activated DNase)6660.7910.0559No
7CLCN6CLCN6
StanfordSource,  GeneCards
chloride channel 66710.7890.0724No
8CLSTN1CLSTN1
StanfordSource,  GeneCards
calsyntenin 16750.7880.0889No
9DHRS3DHRS3
StanfordSource,  GeneCards
dehydrogenase/reductase (SDR family) member 37170.7730.1013No
10HKR3HKR3
StanfordSource,  GeneCards
GLI-Kruppel family member HKR37450.7630.1149No
11FUCA1FUCA1
StanfordSource,  GeneCards
fucosidase, alpha-L- 1, tissue7840.7500.1271No
12EGFL3EGFL3
StanfordSource,  GeneCards
EGF-like-domain, multiple 311710.6380.1019No
13DNAJC11DNAJC11
StanfordSource,  GeneCards
DnaJ (Hsp40) homolog, subfamily C, member 1113620.5960.0955No
14CTNNBIP1CTNNBIP1
StanfordSource,  GeneCards
catenin, beta interacting protein 115120.5660.0926No
15PRDM2PRDM2
StanfordSource,  GeneCards
PR domain containing 2, with ZNF domain15140.5660.1045No
16TARDBPTARDBP
StanfordSource,  GeneCards
TAR DNA binding protein15550.5570.1124No
17SRRM1SRRM1
StanfordSource,  GeneCards
serine/arginine repetitive matrix 116560.5360.1138No
18ALPLALPL
StanfordSource,  GeneCards
alkaline phosphatase, liver/bone/kidney17020.5250.1205No
19EIF4G3EIF4G3
StanfordSource,  GeneCards
eukaryotic translation initiation factor 4 gamma, 317550.5170.1263No
20NUDCNUDC
StanfordSource,  GeneCards
nuclear distribution gene C homolog (A. nidulans)18180.5050.1308No
21VPS13DVPS13D
StanfordSource,  GeneCards
vacuolar protein sorting 13D (yeast)18800.4930.1352No
22EXOSC10EXOSC10
StanfordSource,  GeneCards
exosome component 1020560.4640.1275No
23CLIC4CLIC4
StanfordSource,  GeneCards
chloride intracellular channel 421290.4510.1299No
24FRAP1FRAP1
StanfordSource,  GeneCards
FK506 binding protein 12-rapamycin associated protein 121750.4430.1349No
25UBE4BUBE4B
StanfordSource,  GeneCards
ubiquitination factor E4B (UFD2 homolog, yeast)22910.4240.1323No
26SDHBSDHB
StanfordSource,  GeneCards
succinate dehydrogenase complex, subunit B, iron sulfur (Ip)23580.4150.1346No
27PEX14PEX14
StanfordSource,  GeneCards
peroxisomal biogenesis factor 1425790.3810.1206No
28CNR2CNR2
StanfordSource,  GeneCards
cannabinoid receptor 2 (macrophage)26980.3630.1164No
29PLA2G5PLA2G5
StanfordSource,  GeneCards
phospholipase A2, group V27360.3560.1203No
30HMGCLHMGCL
StanfordSource,  GeneCards
3-hydroxymethyl-3-methylglutaryl-Coenzyme A lyase (hydroxymethylglutaricaciduria)27600.3510.1255No
31ZNF593ZNF593
StanfordSource,  GeneCards
zinc finger protein 59328890.3310.1197No
32PRKCZPRKCZ
StanfordSource,  GeneCards
protein kinase C, zeta31190.3000.1030No
33HES2HES2
StanfordSource,  GeneCards
hairy and enhancer of split (Drosophila) homolog 231640.2950.1049No
34ELA3AELA3A
StanfordSource,  GeneCards
elastase 3A, pancreatic (protease E)31890.2900.1087No
35SCNN1DSCNN1D
StanfordSource,  GeneCards
sodium channel, nonvoltage-gated 1, delta32240.2850.1114No
36WDTC1WDTC1
StanfordSource,  GeneCards
WD and tetratricopeptide repeats 132570.2810.1141No
37KIF1BKIF1B
StanfordSource,  GeneCards
kinesin family member 1B34000.2570.1053No
38RPS6KA1RPS6KA1
StanfordSource,  GeneCards
ribosomal protein S6 kinase, 90kDa, polypeptide 134780.2470.1029No
39NR0B2NR0B2
StanfordSource,  GeneCards
nuclear receptor subfamily 0, group B, member 234970.2430.1062No
40PARK7PARK7
StanfordSource,  GeneCards
Parkinson disease (autosomal recessive, early onset) 735540.2350.1056No
41NPPBNPPB
StanfordSource,  GeneCards
natriuretic peptide precursor B36020.2290.1058No
42AKR7A3AKR7A3
StanfordSource,  GeneCards
aldo-keto reductase family 7, member A3 (aflatoxin aldehyde reductase)36770.2200.1030No
43HTR1DHTR1D
StanfordSource,  GeneCards
5-hydroxytryptamine (serotonin) receptor 1D38490.2000.0901No
44FUSIP1FUSIP1
StanfordSource,  GeneCards
FUS interacting protein (serine-arginine rich) 140640.1720.0722No
45GABRDGABRD
StanfordSource,  GeneCards
gamma-aminobutyric acid (GABA) A receptor, delta42810.1460.0536No
46AKR7A2AKR7A2
StanfordSource,  GeneCards
aldo-keto reductase family 7, member A2 (aflatoxin aldehyde reductase)42850.1450.0564No
47TNFRSF8TNFRSF8
StanfordSource,  GeneCards
tumor necrosis factor receptor superfamily, member 844700.1210.0404No
48SLC2A5SLC2A5
StanfordSource,  GeneCards
solute carrier family 2 (facilitated glucose/fructose transporter), member 544890.1170.0411No
49EPHA2EPHA2
StanfordSource,  GeneCards
EphA246300.0990.0291No
50G1P2G1P2
StanfordSource,  GeneCards
interferon, alpha-inducible protein (clone IFI-15K)46320.0990.0312No
51PAFAH2PAFAH2
StanfordSource,  GeneCards
platelet-activating factor acetylhydrolase 2, 40kDa48200.0780.0140No
52ZBTB17ZBTB17
StanfordSource,  GeneCards
zinc finger and BTB domain containing 1748760.0700.0100No
53C1QBC1QB
StanfordSource,  GeneCards
complement component 1, q subcomponent, beta polypeptide49430.0620.0046No
54MFN2MFN2
StanfordSource,  GeneCards
mitofusin 250680.048-0.0068No
55MSTP9MSTP9
StanfordSource,  GeneCards
macrophage stimulating, pseudogene 950930.046-0.0083No
56GALEGALE
StanfordSource,  GeneCards
galactose-4-epimerase, UDP-52240.029-0.0207No
57CA6CA6
StanfordSource,  GeneCards
carbonic anhydrase VI52610.025-0.0238No
58RERERERE
StanfordSource,  GeneCards
arginine-glutamic acid dipeptide (RE) repeats53250.017-0.0298No
59HMGN2HMGN2
StanfordSource,  GeneCards
high-mobility group nucleosomal binding domain 25522-0.006-0.0494No
60DFFADFFA
StanfordSource,  GeneCards
DNA fragmentation factor, 45kDa, alpha polypeptide5685-0.027-0.0651No
61ICMTICMT
StanfordSource,  GeneCards
isoprenylcysteine carboxyl methyltransferase5733-0.033-0.0691No
62E2F2E2F2
StanfordSource,  GeneCards
E2F transcription factor 25911-0.056-0.0858No
63SRMSRM
StanfordSource,  GeneCards
spermidine synthase5932-0.059-0.0865No
64HTR6HTR6
StanfordSource,  GeneCards
5-hydroxytryptamine (serotonin) receptor 65936-0.059-0.0856No
65SFNSFN
StanfordSource,  GeneCards
stratifin6001-0.066-0.0906No
66CTRCCTRC
StanfordSource,  GeneCards
chymotrypsin C (caldecrin)6048-0.071-0.0937No
67RER1RER1
StanfordSource,  GeneCards
RER1 homolog (S. cerevisiae)6149-0.083-0.1020No
68G1P3G1P3
StanfordSource,  GeneCards
interferon, alpha-inducible protein (clone IFI-6-16)6198-0.087-0.1050No
69FCN3FCN3
StanfordSource,  GeneCards
ficolin (collagen/fibrinogen domain containing) 3 (Hakata antigen)6247-0.093-0.1078No
70PLEKHM2PLEKHM2
StanfordSource,  GeneCards
pleckstrin homology domain containing, family M (with RUN domain) member 26278-0.096-0.1088No
71ARID1AARID1A
StanfordSource,  GeneCards
AT rich interactive domain 1A (SWI- like)6302-0.098-0.1090No
72PLA2G2APLA2G2A
StanfordSource,  GeneCards
phospholipase A2, group IIA (platelets, synovial fluid)6368-0.106-0.1133No
73CASP9CASP9
StanfordSource,  GeneCards
caspase 9, apoptosis-related cysteine protease6490-0.120-0.1229No
74CHD5CHD5
StanfordSource,  GeneCards
chromodomain helicase DNA binding protein 56522-0.123-0.1234No
75KIF17KIF17
StanfordSource,  GeneCards
kinesin family member 176558-0.128-0.1242No
76CAMTA1CAMTA1
StanfordSource,  GeneCards
calmodulin binding transcription activator 16578-0.130-0.1233No
77MASP2MASP2
StanfordSource,  GeneCards
mannan-binding lectin serine protease 26612-0.135-0.1238No
78EXTL1EXTL1
StanfordSource,  GeneCards
exostoses (multiple)-like 16730-0.148-0.1324No
79PADI2PADI2
StanfordSource,  GeneCards
peptidyl arginine deiminase, type II6740-0.149-0.1301No
80ARHGEF16ARHGEF16
StanfordSource,  GeneCards
Rho guanine exchange factor (GEF) 166955-0.174-0.1479No
81TNFRSF4TNFRSF4
StanfordSource,  GeneCards
tumor necrosis factor receptor superfamily, member 47278-0.206-0.1759No
82VAMP3VAMP3
StanfordSource,  GeneCards
vesicle-associated membrane protein 3 (cellubrevin)7522-0.234-0.1954No
83MTHFRMTHFR
StanfordSource,  GeneCards
5,10-methylenetetrahydrofolate reductase (NADPH)7633-0.248-0.2012No
84RHDRHD
StanfordSource,  GeneCards
Rhesus blood group, D antigen7655-0.250-0.1979No
85RAP1GA1RAP1GA1
StanfordSource,  GeneCards
RAP1, GTPase activating protein 17702-0.257-0.1971No
86RPL22RPL22
StanfordSource,  GeneCards
ribosomal protein L227743-0.263-0.1955No
87AGRNAGRN
StanfordSource,  GeneCards
agrin7838-0.277-0.1990No
88TNFRSF9TNFRSF9
StanfordSource,  GeneCards
tumor necrosis factor receptor superfamily, member 97927-0.289-0.2017No
89RHCERHCE
StanfordSource,  GeneCards
Rhesus blood group, CcEe antigens8009-0.300-0.2034No
90CAPZBCAPZB
StanfordSource,  GeneCards
capping protein (actin filament) muscle Z-line, beta8016-0.301-0.1976No
91RSC1A1RSC1A1
StanfordSource,  GeneCards
regulatory solute carrier protein, family 1, member 18248-0.337-0.2137No
92EPHB2EPHB2
StanfordSource,  GeneCards
EphB28386-0.363-0.2197No
93TCEB3TCEB3
StanfordSource,  GeneCards
transcription elongation factor B (SIII), polypeptide 3 (110kDa, elongin A)8389-0.363-0.2122No
94HSPG2HSPG2
StanfordSource,  GeneCards
heparan sulfate proteoglycan 2 (perlecan)8622-0.410-0.2268Yes
95PAX7PAX7
StanfordSource,  GeneCards
paired box gene 78638-0.413-0.2194Yes
96NPPANPPA
StanfordSource,  GeneCards
natriuretic peptide precursor A8679-0.424-0.2144Yes
97MFAP2MFAP2
StanfordSource,  GeneCards
microfibrillar-associated protein 28683-0.424-0.2057Yes
98H6PDH6PD
StanfordSource,  GeneCards
hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase)8728-0.433-0.2009Yes
99CLCNKACLCNKA
StanfordSource,  GeneCards
chloride channel Ka8755-0.437-0.1941Yes
100PIK3CDPIK3CD
StanfordSource,  GeneCards
phosphoinositide-3-kinase, catalytic, delta polypeptide8788-0.444-0.1879Yes
101LYPLA2LYPLA2
StanfordSource,  GeneCards
lysophospholipase II8808-0.449-0.1802Yes
102GPR3GPR3
StanfordSource,  GeneCards
G protein-coupled receptor 38815-0.450-0.1712Yes
103PGDPGD
StanfordSource,  GeneCards
phosphogluconate dehydrogenase8858-0.459-0.1656Yes
104TNFRSF1BTNFRSF1B
StanfordSource,  GeneCards
tumor necrosis factor receptor superfamily, member 1B8887-0.466-0.1585Yes
105WASF2WASF2
StanfordSource,  GeneCards
WAS protein family, member 28944-0.476-0.1540Yes
106PEX10PEX10
StanfordSource,  GeneCards
peroxisome biogenesis factor 109043-0.496-0.1533Yes
107SKISKI
StanfordSource,  GeneCards
v-ski sarcoma viral oncogene homolog (avian)9120-0.511-0.1500Yes
108CNKSR1CNKSR1
StanfordSource,  GeneCards
connector enhancer of kinase suppressor of Ras 19176-0.528-0.1443Yes
109SLC9A1SLC9A1
StanfordSource,  GeneCards
solute carrier family 9 (sodium/hydrogen exchanger), isoform 1 (antiporter, Na+/H+, amiloride sensitive)9277-0.552-0.1425Yes
110ALDH4A1ALDH4A1
StanfordSource,  GeneCards
aldehyde dehydrogenase 4 family, member A19284-0.554-0.1313Yes
111KCNAB2KCNAB2
StanfordSource,  GeneCards
potassium voltage-gated channel, shaker-related subfamily, beta member 29492-0.622-0.1389Yes
112CDACDA
StanfordSource,  GeneCards
cytidine deaminase9535-0.641-0.1294Yes
113CORTCORT
StanfordSource,  GeneCards
cortistatin9616-0.671-0.1231Yes
114LUZP1LUZP1
StanfordSource,  GeneCards
leucine zipper protein 19724-0.717-0.1186Yes
115FGRFGR
StanfordSource,  GeneCards
Gardner-Rasheed feline sarcoma viral (v-fgr) oncogene homolog9867-0.816-0.1154Yes
116TNFRSF25TNFRSF25
StanfordSource,  GeneCards
tumor necrosis factor receptor superfamily, member 259891-0.839-0.0998Yes
117NBL1NBL1
StanfordSource,  GeneCards
neuroblastoma, suppression of tumorigenicity 19927-0.874-0.0847Yes
118ECE1ECE1
StanfordSource,  GeneCards
endothelin converting enzyme 19935-0.881-0.0666Yes
119ENO1ENO1
StanfordSource,  GeneCards
enolase 1, (alpha)9944-0.888-0.0484Yes
120DVL1DVL1
StanfordSource,  GeneCards
dishevelled, dsh homolog 1 (Drosophila)9946-0.889-0.0295Yes
121WNT4WNT4
StanfordSource,  GeneCards
wingless-type MMTV integration site family, member 49954-0.903-0.0109Yes
122DDOSTDDOST
StanfordSource,  GeneCards
dolichyl-diphosphooligosaccharide-protein glycosyltransferase9999-0.9820.0056Yes
Table: GSEA details [plain text format]



Fig 1: GSEA_Results   
Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List



Fig 2: Leukemia_collapsed.gct   
Blue-Pink O' Gram in the Space of the Analyzed GeneSet



Fig 3: Null Distribution for chr1p36   
Histogram of random enrichment scores (real ES = -0.2355216 )