GSEA Report for Dataset Leukemia_collapsed.gct

Enrichment in phenotype: ALL (24 samples)

• 124 / 182 gene sets had enrichment in phenotype ALL
• 24 gene set(s) are significant at nominal pvalue < 5%
• 6 gene set(s) are significant at FDR < 25%
• Detailed enrichment results in html format
• Detailed enrichment results in excel format (tab delimited text)

Enrichment in phenotype: AML (24 samples)

• 58 / 182 gene sets had enrichment in phenotype AML
• 2 gene set(s) are significant at nominal pvalue < 5%
• 0 gene set(s) are significant at FDR < 25%
• Detailed enrichment results in html format
• Detailed enrichment results in excel format (tab delimited text)

Gene markers for the ALL versus AML comparison

• The dataset had 10056 features (genes)
• # of markers for phenotype ALL: 5460 (54.3% ) with correlation area 60.5%
• # of markers for phenotype AML: 4596 (45.7% ) with correlation area 39.5%
• Detailed rank ordered gene list for all features in the dataset
• Heat map and gene list correlation profile for all features in the dataset

Advanced statistics and plots

• Gene set size filters (min=15, max=500) resulted in filtering out 137 / 319 gene sets
• The remaining 182 gene sets were used in the analysis. List of gene sets and their sizes (restricted to probes in the specified dataset)
• Enrichment results and additional statistics for phenotype ALL (excel, html)
• Enrichment results and additional statistics for phenotype AML (excel, html)
• Plot of p-values vs. NES
• Plot of global observed and null densities (after area normalization)
• Global ES histogram

Other

• Parameters used for this analysis