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Region
Intervals
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Trim Interval
Trim Transcript Interval
Prologue
Epilogue
Max Codons
Species
Alignment Set
dm3
dm3_15
dm3_20
dm6
dm6_27
dm6_124insects
dm6_124insects_drosophila
hg18
hg18_44
hg19
hg19_46
hg19_46_primate
hg19_46_supraprimate
hg19_46_placental
hg19_58
hg19_100
hg19_100_primate
hg19_100_supraprimate
hg19_100_mammal
hg19_100_tetrapod
hg38
hg38_58
hg38_100
hg38_100_24mammals
hg38_100_primate
hg38_100_supraprimate
hg38_100_mammal
hg38_100_tetrapod
hg38_120mammals
hg38_120mammals_primate
hg38_120mammals_supraprimate
hg38_120mammals_placental
hg38_470mammals
hg38_470mammals_primate
hg38_470mammals_supraprimate
hg38_470mammals_placental
hg38_241mammals
hg38_241mammals_primate
hg38_241mammals_supraprimate
ce6
ce11
ce11_26
mm9
mm9_30
mm10
mm10_60_29mammals
mm10_60
mm39_35_placental
mm39_35_vertebrate
rn4
rn4_9
rn6
rn6_20
danRer7
sacCer2
sacCer3
galGal6
galGal6_77
galGal4
tair10
Cucumber
crei6_12algae
bter_23bees
amel_23bees
GmorY1_6Glossina
AgamP3
AgamP3_19
AgamP3_9
AalbS1
AaraD1
AatrE1
AchrA1
AculA1
AdarC2
AdirW1
AepiE1
AfarF1
AfunF1
AgamM1
AgamS1
AmacM1
AmelC1
AmerM1
AminM1
AquaS1
AsinS1
AsteI2
AsteS1
ebov
ebov_124
wuhCor1_c
Other
Ancestor
None
Infer
Plurality
InferWithIndels
PluralityWithIndels
Species
Aligned
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Exclude
Species Limit
One Line Per Species
Frame
Codon Position
0
1
2
Justify Frame
none
start
end
best
exonBest
Species Codon Position
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Title
First AA Num
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Splice Site Predictions
None
human
mouse
chicken
zebra_fish
fly
mosquito
bee
worm
cucumber
Plasmodium
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Info
User's Guide
Alignment Sets
Splice Models
Legend
Misc.
Fasta Out
No Palette
➡Antisense
Legend
GAC
No Change
GAT
Synonymous
GAA
Conservative
GGG
Radical
TAA
Ochre Stop Codon
TAG
Amber Stop Codon
TGA
Opal Stop Codon
ATG
In-frame ATG
GA-
Indel
GAC
Frame-shifted
<6
Splice Prediction
()
Intron
...
No alignment
XXX
Inferred bases