NC_045512_SARS_CoV_2_Wuhan_Hu_1_aa | M | S | D | N | G | P | Q | N | Q | R | N | A | P | R | I | T | F | G | G | P | S | D | S | T | G | S | N | Q | N | G | E | R | S | G | A | R | S | K | Q | R | R | P | Q | G | L | P | N | N | T | A | S | W | F | T | A | L | T | Q | H | G | K | E | D | L | K | F | P | R | G | Q | G | V | P | I | N | T | N | S | S | P | D | D | Q | I | G | Y | Y | R | R | A | T | R | R | I | R | G | G | D | G | K | M | K | D | L | S | P | R | W | Y | F | Y | Y | L | G | T | G | P | E | A | G | L | P | Y | G | A | N | K | D | G | I | I | W | V | A | T | E | G | A | L | N | T | P | K | D | H | I | G | T | R | N | P | A | N | N | A | A | I | V | L | Q | L | P | Q | G | T | T | L | P | K | G | F | Y | A | E | G | S | R | G | G | S | Q | A | S | S | R | S | S | S | R | S | R | N | S | S | R | N | S | T | P | G | S | S | R | G | T | S | P | A | R | M | A | G | N | G | G | D | A | A | L | A | L | L | L | L | D | R | L | N | Q | L | E | S | K | M | S | G | K | G | Q | Q | Q | Q | G | Q | T | V | T | K | K | S | A | A | E | A | S | K | K | P | R | Q | K | R | T | A | T | K | A | Y | N | V | T | Q | A | F | G | R | R | G | P | E | Q | T | Q | G | N | F | G | D | Q | E | L | I | R | Q | G | T | D | Y | K | H | W | P | Q | I | A | Q | F | A | P | S | A | S | A | F | F | G | M | S | R | I | G | M | E | V | T | P | S | G | T | W | L | T | Y | T | G | A | I | K | L | D | D | K | D | P | N | F | K | D | Q | V | I | L | L | N | K | H | I | D | A | Y | K | T | F | P | P | T | E | P | K | K | D | K | K | K | K | A | D | E | T | Q | A | L | P | Q | R | Q | K | K | Q | Q | T | V | T | L | L | P | A | A | D | L | D | D | F | S | K | Q | L | Q | Q | S | M | S | S | A | D | S | T | Q | A | * |
NC_045512_SARS_CoV_2_Wuhan_Hu_1 | ATG | TCT | GAT | AAT | GGA | CCC | CA---A | AAT | CAG | CGA | AAT | GCA | CCC | CGC | ATT | ACG | TTT | GGT | GGA | CCC | TCA | GAT | TCA | ACT | GGC | AGT | AAC | CAG | AAT | GGA | GAA | CGC | AGT | GGG | GCG | CGA | TCA | AAA | CAA | CGT | CGG | CCC | CAA | GGT | TTA | CCC | AAT | AAT | ACT | GCG | TCT | TGG | TTC | ACC | GCT | CTC | ACT | CAA | CAT | GGC | AAG | GAA | GAC | CTT | AAA | TTC | CCT | CGA | GGA | CAA | GGC | GTT | CCA | ATT | AAC | ACC | AAT | AGC | AGT | CCA | GAT | GAC | CAA | ATT | GGC | TAC | TAC | CGA | AGA | GCT | ACC | AGA | CGA | ATT | CGT | GGT | GGT | GAC | GGT | AAA | ATG | AAA | GAT | CTC | AGT | CCA | AGA | TGG | TAT | TTC | TAC | TAC | CTA | GGA | ACT | GGG | CCA | GAA | GCT | GGA | CTT | CCC | TAT | GGT | GCT | AAC | AAA | GAC | GGC | ATC | ATA | TGG | GTT | GCA | ACT | GAG | GGA | GCC | TTG | AAT | ACA | CCA | AAA | GAT | CAC | ATT | GGC | ACC | CGC | AAT | CCT | GCT | AAC | AAT | GCT | GCA | ATC | GTG | CTA | CAA | CTT | CCT | CAA | GGA | ACA | ACA | TTG | CCA | AAA | GGC | TTC | TAC | GCA | GAA | GGG | AGC | AGA | GGC | GGC | AGT | CAA | GCC | TCT | TCT | CGT | TCC | TCA | TCA | CGT | AGT | CGC | AAC | AGT | TCA | AGA | AAT | TCA | ACT | CCA | GGC | AGC | AGT | AGG | GGA | ACT | TCT | CCT | GCT | AGA | ATG | GCT | GGC | AAT | GGC | GGT | GAT | GCT | GCT | CTT | GCT | TTG | CTG | CTG | CTT | GAC | AGA | TTG | AAC | CAG | CTT | GAG | AGC | AAA | ATG | TCT | GGT | AAA | GGC | CAA | CAA | CAA | CAA | GGC | CAA | ACT | GTC | ACT | AAG | AAA | TCT | GCT | GCT | GAG | GCT | TCT | AAG | AAG | CCT | CGG | CAA | AAA | CGT | ACT | GCC | ACT | AAA | GCA | TAC | AAT | GTA | ACA | CAA | GCT | TTC | GGC | AGA | CGT | GGT | CCA | GAA | CAA | ACC | CAA | GGA | AAT | TTT | GGG | GAC | CAG | GAA | CTA | ATC | AGA | CAA | GGA | ACT | GAT | TAC | AAA | CAT | TGG | CCG | CAA | ATT | GCA | CAA | TTT | GCC | CCC | AGC | GCT | TCA | GCG | TTC | TTC | GGA | ATG | TCG | CGC | ATT | GGC | ATG | GAA | GTC | ACA | CCT | TCG | GGA | ACG | TGG | TTG | ACC | TAC | ACA | GGT | GCC | ATC | AAA | TTG | GAT | GAC | AAA | GAT | CCA | AAT | TTC | AAA | GAT | CAA | GTC | ATT | TTG | CTG | AAT | AAG | CAT | ATT | GAC | GCA | TAC | AAA | ACA | TTC | CCA | CCA | ACA | GAG | CCT | AAA | AAG | GAC | AAA | AAG | AAG | AAG | GCT | GAT | GAA | ACT | CAA | GCC | TTA | CCG | CAG | AGA | CAG | AAG | AAA | CAG | CAA | ACT | GTG | ACT | CTT | CTT | CCT | GCT | GCA | GAT | TTG | GAT | GAT | TTC | TCC | AAA | CAA | TTG | CAA | CAA | TCC | ATG | AGC | AG------T | GCT | GAC | TCA | ACT | CAG | GCC | TAA |
MN996532_Bat_CoV_RaTG13 | ATG | TCT | GAT | AAT | GGA | CCC | CA---A | AAC | CAA | CGA | AAT | GCA | CCC | CGC | ATT | ACG | TTT | GGT | GGA | CCC | TCA | GAT | TCA | ACT | GGC | AGT | AAC | CAG | AAT | GGA | GAA | CGC | AGT | GGA | GCA | CGA | CCA | AAA | CAA | CGT | CGG | CCT | CAA | GGT | TTA | CCC | AAT | AAT | ACT | GCG | TCT | TGG | TTC | ACC | GCT | CTC | ACT | CAA | CAT | GGC | AAG | GAA | GAC | CTT | AAA | TTC | CCT | CGA | GGA | CAA | GGC | GTT | CCG | ATT | AAT | ACC | AAT | AGC | AGT | CCA | GAT | GAC | CAA | ATT | GGC | TAC | TAC | CGA | AGA | GCT | ACC | AGA | CGA | ATT | CGT | GGT | GGT | GAC | GGT | AAA | ATG | AAA | GAT | CTC | AGT | CCA | AGA | TGG | TAC | TTT | TAC | TAC | CTA | GGA | ACT | GGG | CCA | GAA | GCT | GGA | CTT | CCC | TAT | GGT | GCT | AAC | AAA | GAC | GGC | ATC | ATA | TGG | GTT | GCA | ACT | GAG | GGA | GCC | TTG | AAT | ACA | CCA | AAA | GAT | CAC | ATT | GGC | ACC | CGC | AAT | CCT | GCT | AAC | AAT | GCT | GCA | ATC | GTG | CTA | CAA | CTT | CCT | CAA | GGA | ACA | ACA | TTG | CCA | AAA | GGC | TTC | TAC | GCA | GAA | GGG | AGC | AGA | GGT | GGC | AGT | CAA | GCT | TCT | TCT | CGC | TCT | TCA | TCA | CGT | AGT | CGC | AAC | AGT | TCA | AGA | AAC | TCA | ACT | CCA | GGC | AGC | AGT | AGG | GGA | ACT | TCC | CCT | GCT | AGG | ATG | GCT | GGC | AAT | GGC | AGT | GAT | GCT | GCT | CTT | GCT | TTG | CTG | CTG | CTT | GAC | AGA | TTG | AAC | CAG | CTT | GAG | AGC | AAA | ATG | TCT | GGT | AAA | GGC | CAA | CAA | CAA | CAG | AGC | CAA | ACT | GTC | ACT | AAG | AAA | TCT | GCT | GCA | GAG | GCT | TCT | AAG | AAA | CCT | CGG | CAA | AAA | CGT | ACT | GCC | ACC | AAA | CAA | TAC | AAT | GTA | ACA | CAA | GCT | TTT | GGC | AGA | CGT | GGT | CCA | GAA | CAA | ACC | CAA | GGA | AAC | TTT | GGG | GAT | CAA | GAA | CTA | ATC | AGG | CAA | GGA | ACT | GAT | TAC | AAA | CAT | TGG | CCG | CAA | ATT | GCA | CAA | TTC | GCT | CCC | AGC | GCT | TCA | GCA | TTC | TTC | GGA | ATG | TCG | CGC | ATT | GGC | ATG | GAA | GTC | ACA | CCT | TCG | GGA | ACG | TGG | TTG | ACC | TAT | ACA | GGT | GCC | ATT | AAA | TTG | GAT | GAC | AAA | GAT | CCA | AAT | TTC | AAA | GAT | CAA | GTC | ATT | TTG | CTG | AAT | AAG | CAC | ATT | GAC | GCA | TAC | AAA | ACA | TTC | CCA | CCA | ACA | GAG | CCT | AAA | AAG | GAC | AAA | AAG | AAA | AAG | GCT | GAT | GAA | ACT | CAA | GCC | TTA | CCG | CAG | AGA | CAG | AAG | AAA | CAG | CAA | ACT | GTG | ACT | CTT | CTT | CCT | GCT | GCA | GAT | TTG | GAT | GAC | TTC | TCC | AAA | CAA | TTG | CAA | CAA | TCC | ATG | AGC | AG------T | GCT | GAT | TCA | ACT | CAG | GCC | TAA |
MG772933_Bat_SARS_like_CoV_bat_SL_CoVZC45 | ATG | TCT | GAT | AAT | GGA | CCC | CA---A | AAC | CAA | CGT | AGT | GCA | CCC | CGC | ATT | ACA | TTT | GGT | GGA | CCC | TCA | GAT | TCA | AGT | GAC | AAT | AGC | AAA | AAC | GGA | GAG | CGC | AAT | GGT | GCA | CGA | CCT | AAA | CAA | CGT | CGA | CCC | CAA | GGC | TTA | CCC | AAT | AAT | ACT | GCA | TCT | TGG | TTC | ACC | GCT | CTC | ACT | CAA | CAT | GGC | AAG | GAA | AAC | CTT | ACG | TTC | CCT | CGA | GGG | CAA | GGT | GTT | CCA | ATC | AAC | ACC | AAT | AGC | TCT | AAA | GAT | GAC | CAA | ATT | GGC | TAC | TAC | CGT | AGA | GCT | ACC | AGA | CGA | ATT | CGT | GGT | GGT | GAC | GGT | AAA | ATG | AAA | GAG | CTC | AGC | CCC | AGA | TGG | TAT | TTT | TAC | TAT | CTA | GGA | ACT | GGA | CCA | GAA | GCT | GGA | CTT | CCC | TAT | GGT | GCT | AAC | AAA | GAA | GGC | ATC | ATA | TGG | GTT | GCA | ACT | GAG | GGA | GCC | TTA | AAC | ACA | CCG | AAA | GAC | CAC | ATT | GGC | ACC | CGC | AAT | CCT | GCT | AAC | AAT | GCT | GCA | ATC | GTG | CTA | CAA | CTT | CCT | CAA | GGA | ACA | ACA | TTG | CCA | AAA | GGC | TTC | TAC | GCA | GAA | GGG | AGC | AGA | GGC | GGC | AGT | CAA | GCT | TCT | TCA | CGC | TCC | TCA | TCA | CGT | AGT | CGC | AAC | AGT | TCA | AGA | AAC | TCA | ACT | CCA | GGC | AGC | AGT | AGG | GGA | ACT | TCT | CCT | GCT | AGA | ATG | GCT | GGC | AAT | GGC | GGT | GAC | ACT | GCT | CTT | GCT | TTG | CTG | CTG | CTA | GAT | AGG | TTG | AAC | CAG | CTT | GAG | AAC | AAA | GTA | TCT | GGC | AAA | GGC | CAA | CAA | CAA | CAG | GGC | CAA | ACT | GTC | ACT | AAG | AAA | TCT | GCT | GCT | GAG | GCA | TCT | AAA | AAG | CCT | CGC | CAA | AAA | CGT | ACT | GCT | ACA | AAA | CAG | TAC | AAC | GTC | ACT | CAA | GCA | TTT | GGG | AGA | CGT | GGT | CCA | GAA | CAA | ACC | CAA | GGA | AAT | TTT | GGG | GAC | CAA | GAA | TTA | ATC | AGA | CAA | GGA | ACT | GAT | TAC | AAA | CAT | TGG | CCG | CAA | ATT | GCA | CAA | TTT | GCT | CCA | AGT | GCC | TCT | GCA | TTC | TTT | GGA | ATG | TCA | CGC | ATT | GGC | ATG | GAA | GTC | ACA | CCT | TCG | GGA | ACA | TGG | CTG | ACT | TAT | CAT | GGA | GCC | ATT | AAA | TTG | GAT | GAC | AAA | GAT | CCA | CAA | TTC | AAA | GAT | AAC | GTC | ATA | CTG | CTG | AAT | AAG | CAC | ATT | GAC | GCA | TAC | AAA | ACA | TTC | CCA | CCA | ACA | GAG | CCT | AAA | AAG | GAC | AAA | AAG | AAA | AAG | GCT | GAT | GAA | CTT | CAG | GCT | TTA | CCG | CAG | AGA | CAG | AAG | AAA | CAA | CAA | ACT | GTG | ACC | CTT | CTT | CCT | GCT | GCA | GAT | TTG | GAT | GAA | TTC | TCC | AAA | CAG | TTG | CAA | CAA | TCC | ATG | AGT | GG------T | ACT | GAT | TCA | ACC | CAG | GCT | TAA |
MG772934_Bat_SARS_like_CoV_bat_SL_CoVZXC21 | ATG | TCT | GAT | AAT | GGA | CCC | CA---A | AAC | CAG | AGT | AGT | GCA | CCC | CGC | ATT | ACA | TTT | GGT | GGA | CCC | TCA | GAT | TCA | AGT | GAC | AAT | AGC | CAA | AAC | GGA | GAG | CGC | AAT | GGT | GCA | CGA | CCT | AAA | CAA | CGT | CGA | CCC | CAA | GGC | TTA | CCC | AAT | AAT | ACT | GCA | TCT | TGG | TTC | ACC | GCT | CTC | ACT | CAA | CAT | GGC | AAG | GAA | AAC | CTT | ACG | TTC | CCT | CGA | GGG | CAA | GGT | GTT | CCA | ATT | AAC | ACC | AAT | AGC | TCT | AAA | GAT | GAC | CAA | ATT | GGC | TAC | TAC | CGT | AGA | GCT | ACC | AGA | CGA | ATT | CGT | GGC | GGT | GAC | GGT | AAA | ATG | AAA | GAG | CTC | AGC | CCC | AGA | TGG | TAT | TTT | TAC | TAT | CTG | GGA | ACT | GGA | CCA | GAA | GCT | GGA | CTT | CCC | TAT | GGT | GCT | AAC | AAA | GAA | GGC | ATC | ATA | TGG | GTT | GCA | ACT | GAG | GGA | GCC | TTA | AAC | ACA | CCA | AAA | GAC | CAC | ATT | GGC | ACC | CGC | AAT | CCT | GCT | AAC | AAT | GCT | GCA | ATC | GTG | CTA | CAA | CTT | CCT | CAA | GGA | ACA | ACA | TTG | CCA | AAA | GGC | TTC | TAC | GCA | GAA | GGG | AGC | AGA | GGC | GGC | AGT | CAA | GCT | TCT | TCA | CGC | TCC | TCA | TCA | CGT | AGT | CGC | AAC | AGT | TCA | AGA | AAC | TCA | ACT | CCA | GGC | AGC | AGT | AGG | GGA | ACT | TCT | CCT | GCT | AGA | ATG | GCT | GGC | AAT | GGC | GGT | GAC | ACT | GCT | CTT | GCT | TTG | CTG | CTG | CTA | GAT | AGG | TTG | AAC | CAG | CTT | GAG | AAC | AAG | ATA | TCT | GGC | AAA | GGC | CAA | CAA | CAA | CAA | GGC | CAA | ACT | GTC | ACT | AAG | AAA | TCT | GCT | GCT | GAG | GCA | TCT | AAA | AAG | CCT | CGC | CAA | AAA | CGT | ACT | GCC | ACA | AAA | CAG | TAC | AAC | GTC | ACT | CAA | GCA | TTT | GGG | AGA | CGT | GGT | CCA | GAA | CAA | ACC | CAA | GGA | AAT | TTC | GGG | GAC | CAA | GAA | TTA | ATC | AGA | CAA | GGA | ACT | GAT | TAC | AAA | CAT | TGG | CCG | CAA | ATT | GCA | CAA | TTT | GCT | CCA | AGT | GCC | TCT | GCA | TTC | TTT | GGA | ATG | TCT | CGC | ATT | GGC | ATG | GAA | GTC | ACA | CCT | TCG | GGA | ACA | TGG | CTG | ACT | TAT | CAT | GGA | GCC | ATT | AAA | TTG | GAT | GAC | AAA | GAT | CCA | CAA | TTC | AAA | GAC | AAC | GTC | ATA | CTG | CTG | AAT | AAG | CAC | ATT | GAC | GCA | TAC | AAA | ACA | TTC | CCA | CCA | ACA | GAG | CCT | AAA | AAG | GAC | AAA | AAG | AAA | AAG | GCT | GAT | GAA | CTT | CAG | GCT | TTA | CCG | CAG | AGA | CAG | AAG | AAG | CAA | CAA | ACT | GTG | ACT | CTT | CTT | CCT | GCT | GCA | GAT | TTG | GAT | GAA | TTC | TCC | AAA | CAG | TTG | CAA | CAA | TCC | ATG | AGT | GG------T | ACT | GAT | TCA | ACC | CAG | GCT | TAA |
NC_004718_SARS_CoV | ATG | TCT | GAT | AAT | GGA | CCC | CAATCA | AAC | CAA | CGT | AGT | GCC | CCC | CGC | ATT | ACA | TTT | GGT | GGA | CCC | ACA | GAT | TCA | ACT | GAC | AAT | AAC | CAG | AAT | GGA | GGA | CGC | AAT | GGG | GCA | AGG | CCA | AAA | CAG | CGC | CGA | CCC | CAA | GGT | TTA | CCC | AAT | AAT | ACT | GCG | TCT | TGG | TTC | ACA | GCT | CTC | ACT | CAG | CAT | GGC | AAG | GAG | GAA | CTT | AGA | TTC | CCT | CGA | GGC | CAG | GGC | GTT | CCA | ATC | AAC | ACC | AAT | AGT | GGT | CCA | GAT | GAC | CAA | ATT | GGC | TAC | TAC | CGA | AGA | GCT | ACC | CGA | CGA | GTT | CGT | GGT | GGT | GAC | GGC | AAA | ATG | AAA | GAG | CTC | AGC | CCC | AGA | TGG | TAC | TTC | TAT | TAC | CTA | GGA | ACT | GGC | CCA | GAA | GCT | TCA | CTT | CCC | TAC | GGC | GCT | AAC | AAA | GAA | GGC | ATC | GTA | TGG | GTT | GCA | ACT | GAG | GGA | GCC | TTG | AAT | ACA | CCC | AAA | GAC | CAC | ATT | GGC | ACC | CGC | AAT | CCT | AAT | AAC | AAT | GCT | GCC | ACC | GTG | CTA | CAA | CTT | CCT | CAA | GGA | ACA | ACA | TTG | CCA | AAA | GGC | TTC | TAC | GCA | GAG | GGA | AGC | AGA | GGC | GGC | AGT | CAA | GCC | TCT | TCT | CGC | TCC | TCA | TCA | CGT | AGT | CGC | GGT | AAT | TCA | AGA | AAT | TCA | ACT | CCT | GGC | AGC | AGT | AGG | GGA | AAT | TCT | CCT | GCT | CGA | ATG | GCT | AGC | GGA | GGT | GGT | GAA | ACT | GCC | CTC | GCG | CTA | TTG | CTG | CTA | GAC | AGA | TTG | AAC | CAG | CTT | GAG | AGC | AAA | GTT | TCT | GGT | AAA | GGC | CAA | CAA | CAA | CAA | GGC | CAA | ACT | GTC | ACT | AAG | AAA | TCT | GCT | GCT | GAG | GCA | TCT | AAA | AAG | CCT | CGC | CAA | AAA | CGT | ACT | GCC | ACA | AAA | CAG | TAC | AAC | GTC | ACT | CAA | GCA | TTT | GGG | AGA | CGT | GGT | CCA | GAA | CAA | ACC | CAA | GGA | AAT | TTC | GGG | GAC | CAA | GAC | CTA | ATC | AGA | CAA | GGA | ACT | GAT | TAC | AAA | CAT | TGG | CCG | CAA | ATT | GCA | CAA | TTT | GCT | CCA | AGT | GCC | TCT | GCA | TTC | TTT | GGA | ATG | TCA | CGC | ATT | GGC | ATG | GAA | GTC | ACA | CCT | TCG | GGA | ACA | TGG | CTG | ACT | TAT | CAT | GGA | GCC | ATT | AAA | TTG | GAT | GAC | AAA | GAT | CCA | CAA | TTC | AAA | GAC | AAC | GTC | ATA | CTG | CTG | AAC | AAG | CAC | ATT | GAC | GCA | TAC | AAA | ACA | TTC | CCA | CCA | ACA | GAG | CCT | AAA | AAG | GAC | AAA | AAG | AAA | AAG | ACT | GAT | GAA | GCT | CAG | CCT | TTG | CCG | CAG | AGA | CAA | AAG | AAG | CAG | CCC | ACT | GTG | ACT | CTT | CTT | CCT | GCG | GCT | GAC | ATG | GAT | GAT | TTC | TCC | AGA | CAA | CTT | CAA | AAT | TCC | ATG | AGT | GGAGCTTCT | GCT | GAT | TCA | ACT | CAG | GCA | TAA |
KT444582_SARS_like_CoV_WIV16 | ATG | TCT | GAT | AAT | GGA | CCC | CAACCA | AAT | CAG | CGT | AGT | GCC | CCC | CGC | ATT | ACA | TTT | GGT | GGA | CCC | ACA | GAT | TCA | ATT | GAC | AAT | AAC | CAG | AAT | GGA | GGA | CGC | AAT | GGG | GCA | AGG | CCA | AAA | CAG | CGC | CGA | CCC | CAA | GGT | TTA | CCC | AAT | AAT | ACT | GCG | TCT | TGG | TTC | ACA | GCT | CTC | ACT | CAG | CAT | GGC | AAG | GAG | GAA | CTT | AGA | TTC | CCT | CGA | GGC | CAG | GGC | GTT | CCA | ATC | AAC | ACC | AAT | AGT | GGT | CCA | GAT | GAC | CAA | ATT | GGC | TAC | TAC | CGA | AGA | GCT | ACC | CGA | CGA | GTT | CGT | GGT | GGT | GAC | GGC | AAA | ATG | AAA | GAG | CTC | AGC | CCC | AGA | TGG | TAC | TTT | TAT | TAC | CTA | GGA | ACC | GGC | CCA | GAA | GCT | TCA | CTT | CCC | TAC | GGC | GCT | AAC | AAA | GAA | GGC | ATC | GTA | TGG | GTC | GCA | ACT | GAG | GGA | GCC | TTG | AAT | ACA | CCG | AAA | GAT | CAC | ATC | GGC | ACC | CGC | AAT | CCT | AAT | AAC | AAT | GCT | GCC | ACC | GTG | CTA | CAA | CTT | CCT | CAA | GGA | ACA | ACA | TTG | CCA | AAA | GGC | TTC | TAC | GCA | GAG | GGG | AGC | AGA | GGC | GGC | AGT | CAA | GCC | TCT | TCT | CGC | TCT | TCG | TCA | CGT | AGT | CGC | GGT | AAT | TCA | AGA | AAT | TCA | ACT | CCT | GGC | AGC | AGT | AGG | GGA | AAT | TCT | CCT | GCT | CGA | ATG | GCT | AGC | GGA | GGT | GGT | GAA | ACT | GCC | CTC | GCG | CTA | TTG | CTG | CTA | GAC | AGA | TTG | AAC | CAG | CTT | GAG | AGC | AAA | GTT | TCT | GGT | AAA | GGC | CAA | CAA | CAA | CAA | GGC | CAA | ACT | GTC | ACT | AAG | AAA | TCT | GCT | GCT | GAG | GCA | TCT | AAA | AAG | CCT | CGC | CAA | AAA | CGT | ACT | GCT | ACA | AAA | CAG | TAC | AAC | GTC | ACT | CAA | GCA | TTT | GGG | AGA | CGT | GGT | CCA | GAA | CAA | ACC | CAA | GGA | AAC | TTC | GGG | GAC | CAA | GAC | CTA | ATC | AGA | CAA | GGA | ACT | GAT | TAT | AAA | CAT | TGG | CCG | CAA | ATT | GCA | CAA | TTT | GCT | CCA | AGT | GCC | TCT | GCA | TTC | TTC | GGA | ATG | TCA | CGC | ATT | GGC | ATG | GAA | GTC | ACA | CCT | TCG | GGA | ACA | TGG | CTG | ACT | TAT | CAT | GGA | GCC | ATT | AAA | TTG | GAT | GAC | AAA | GAT | CCA | CAA | TTC | AAA | GAC | AAC | GTC | ATA | CTG | CTG | AAT | AAG | CAC | ATT | GAC | GCA | TAC | AAA | ACA | TTC | CCA | CCA | ACA | GAG | CCT | AAA | AAG | GAC | AAA | AAG | AAA | AAG | ACT | GAT | GAA | GCT | CAG | CCT | TTA | CCG | CAG | AGA | CAA | AAG | AAG | CAG | CCC | ACT | GTG | ACT | CTT | CTT | CCT | GCG | GCT | GAC | ATG | GAT | GAT | TTC | TCC | AGA | CAA | CTT | CAA | AAT | TCC | ATG | AGT | GGAGCTTCT | GCT | GAT | TCA | ACT | CAG | GCA | TAA |
KY417146_Bat_SARS_like_CoV_Rs4231 | ATG | TCT | GAT | AAT | GGA | CCC | CAACCA | AAT | CAG | CGT | AGT | GCC | CCC | CGC | ATT | ACA | TTT | GGT | GGA | CCC | ACA | GAT | TCA | ACT | GAC | AAT | AAC | CAG | AAT | GGA | GGA | CGC | AAT | GGG | GCA | AGG | CCA | AAA | CAG | CGC | CGA | CCC | CAA | GGT | TTA | CCC | AAT | AAT | ACT | GCG | TCT | TGG | TTC | ACA | GCT | CTC | ACT | CAG | CAT | GGC | AAG | GAG | GAA | CTT | AGA | TTC | CCT | CGA | GGC | CAG | GGC | GTT | CCA | ATC | AAC | ACC | AAT | AGT | GGT | CCA | GAT | GAC | CAA | ATT | GGC | TAC | TAC | CGA | CGA | GCT | ACC | CGA | CGA | GTT | CGT | GGT | GGT | GAC | GGC | AAA | ATG | AAA | GAG | CTC | AGC | CCC | AGA | TGG | TAC | TTC | TAT | TAC | CTA | GGA | ACT | GGC | CCA | GAA | GCT | TCA | CTT | CCC | TAC | GGC | GCT | AAC | AAA | GAA | GGC | ATC | ATA | TGG | GTC | GCA | ACT | GAG | GGA | GCC | TTG | AAT | ACA | CCG | AAA | GAT | CAC | ATC | GGC | ACC | CGC | AAT | CCT | AAT | AAC | AAT | GCT | GCC | ACC | GTG | CTA | CAA | CTT | CCT | CAA | GGA | ACA | ACA | TTG | CCA | AAA | GGC | TTC | TAC | GCA | GAG | GGG | AGC | AGA | GGC | GGC | AGT | CAA | GCC | TCT | TCT | CGC | TCT | TCG | TCA | CGT | AGT | CGC | GGT | AAT | TCA | AGA | AAT | TCA | ACT | CCT | GGC | AGC | AGT | AGG | GGA | AAT | TCT | CCT | GCT | CGA | ATG | GCT | AGC | GGA | GGT | GGT | GAA | ACT | GCC | CTC | GCG | CTA | TTG | CTG | CTA | GAC | AGA | TTG | AAC | CAG | CTT | GAG | AGC | AAA | GTT | TCT | GGT | AAA | GGC | CAA | CAA | CAA | CAA | GGC | CAA | ACT | GTC | ACT | AAG | AAA | TCT | GCT | GCT | GAG | GCA | TCT | AAA | AAG | CCT | CGC | CAA | AAA | CGT | ACT | GCT | ACA | AAA | CAG | TAC | AAC | GTC | ACT | CAA | GCA | TTT | GGG | AGA | CGT | GGT | CCA | GAA | CAA | ACC | CAA | GGA | AAC | TTC | GGG | GAC | CAA | GAC | CTA | ATC | AGA | CAA | GGA | ACT | GAT | TAT | AAA | CAT | TGG | CCG | CAA | ATT | GCA | CAA | TTT | GCT | CCA | AGT | GCC | TCT | GCA | TTC | TTC | GGA | ATG | TCA | CGC | ATT | GGC | ATG | GAA | GTC | ACA | CCT | TCG | GGA | ACA | TGG | CTG | ACT | TAT | CAT | GGA | GCC | ATT | AAA | TTG | GAT | GAC | AAA | GAT | CCA | CAA | TTC | AAA | GAC | AAC | GTC | ATA | CTG | CTG | AAT | AAG | CAC | ATT | GAC | GCA | TAC | AAA | ACA | TTC | CCA | CCA | ACA | GAG | CCT | AAA | AAG | GAC | AAA | AAG | AAA | AAG | ACT | GAT | GAA | GCT | CAG | CCT | TTA | CCG | CAG | AGA | CAA | AAG | AAG | CAG | CCC | ACT | GTG | ACT | CTT | CTT | CCT | GCG | GCT | GAC | ATG | GAT | GAT | TTC | TCC | AGA | CAA | CTT | CAA | AAT | TCC | ATG | AGT | GGAGCTTCT | GCT | GAT | TCA | ACT | CAG | GCA | TAA |
MK211376_CoV_BtRs_BetaCoV_YN2018B | ATG | TCT | GAT | AAT | GGA | CCC | CAATCA | AAC | CAG | CGT | AGT | GCC | CCC | CGC | ATT | ACA | TTT | GGT | GGA | CCC | ACA | GAT | TCA | ACT | GAC | AAT | AAC | CAG | AAT | GGA | GGA | CGC | AAT | GGG | GCA | AGG | CCA | AAA | CAA | CGC | CGA | CCC | CAA | GGT | TTA | CCC | AAT | AAT | ACT | GCG | TCT | TGG | TTC | ACA | GCT | CTC | ACT | CAG | CAT | GGC | AAG | GAG | GAA | CTT | AGA | TTC | CCT | CGA | GGC | CAG | GGC | GTT | CCA | ATC | AAC | ACC | AAT | AGT | GGT | CCA | GAT | GAC | CAA | ATT | GGC | TAC | TAC | CGA | AGA | GCT | ACC | CGA | CGA | GTT | CGT | GGT | GGT | GAC | GGC | AAA | ATG | AAA | GAG | CTC | AGC | CCC | AGA | TGG | TAC | TTC | TAT | TAC | CTA | GGA | ACT | GGC | CCA | GAA | GCT | TCA | CTT | CCC | TAC | GGC | GCT | AAC | AAA | GAA | GGC | ATC | GTA | TGG | GTC | GCA | ACT | GAG | GGA | GCC | TTG | AAT | ACA | CCG | AAG | GAT | CAC | ATT | GGC | ACC | CGC | AAT | CCT | AAT | AAC | AAT | GCT | GCC | ATC | GTG | CTA | CAA | CTT | CCT | CAA | GGA | ACA | ACA | TTG | CCA | AAA | GGC | TTC | TAC | GCA | GAG | GGG | AGC | AGA | GGC | GGC | AGT | CAA | GCC | TCT | TCT | CGC | TCT | TCA | TCA | CGT | AGT | CGC | GGT | AAT | TCA | AGA | AAT | TCA | ACT | CCT | GGC | AGC | AGT | AGG | GGA | AAT | TCT | CCT | GCT | CGA | ATG | GCT | AGC | GGA | GGT | GGT | GAA | ACT | GCC | CTC | GCG | CTA | TTG | CTG | CTA | GAC | AGA | CTG | AAC | CAG | CTT | GAG | AGC | AAA | GTT | TCT | GGT | AAA | GGC | CAA | CAA | CAA | CAA | GGC | CAA | ACT | GTC | ACT | AAG | AAA | TCT | GCT | GCT | GAG | GCA | TCT | AAA | AAG | CCT | CGC | CAA | AAA | CGT | ACT | GCT | ACA | AAA | CAG | TAC | AAC | GTC | ACT | CAA | GCT | TTT | GGG | AGA | CGT | GGT | CCA | GAA | CAA | ACC | CAA | GGA | AAC | TTC | GGG | GAC | CAA | GAT | CTA | ATC | AGA | CAA | GGA | ACT | GAT | TAC | AAA | CAT | TGG | CCG | CAA | ATT | GCA | CAA | TTT | GCT | CCA | AGT | GCC | TCT | GCA | TTC | TTC | GGA | ATG | TCA | CGC | ATT | GGC | ATG | GAA | GTC | ACA | CCT | TCG | GGA | ACA | TGG | CTG | ACT | TAT | CAT | GGA | GCC | ATT | AAA | CTG | GAT | GAC | AAA | GAT | CCA | CAA | TTC | AAA | GAC | AAC | GTC | ATA | CTG | CTG | AAT | AAG | CAC | ATT | GAC | GCA | TAC | AAA | ACA | TTC | CCA | CCA | ACA | GAG | CCT | AAA | AAG | GAC | AAA | AAG | AAA | AAG | ACT | GAT | GAA | GCT | CAG | CCT | TTA | CCG | CAG | AGA | CAA | AAG | AAG | CAG | CCC | ACT | GTG | ACT | CTT | CTT | CCT | GCG | GCT | GAC | ATG | GAT | GAT | TTC | TCC | AGA | CAA | CTT | CAA | AAT | TCC | ATG | AGT | GGAGCTTCT | GCT | GAT | TCA | ACT | CAG | GCA | TAA |
KY417151_Bat_SARS_like_CoV_Rs7327 | ATG | TCT | GAT | AAT | GGA | CCC | CAACCA | AAC | CAG | CGT | AGT | GCC | CCC | CGC | ATT | ACA | TTT | GGT | GGA | CCC | ACA | GAT | TCA | ACT | GAC | AAT | AAC | CAG | AAT | GGA | GGA | CGC | AAT | GGG | GCA | AGG | CCA | AAA | CAG | CGC | CGA | CCC | CAA | GGT | TTA | CCC | AAT | AAT | ACT | GCG | TCT | TGG | TTC | ACA | GCT | CTC | ACT | CAG | CAT | GGC | AAG | GAG | GAA | CTT | AGA | TTC | CCT | CGA | GGC | CAG | GGC | GTT | CCA | ATC | AAC | ACC | AAT | AGT | GGT | CCA | GAT | GAC | CAA | ATT | GGC | TAC | TAC | CGA | AGA | GCT | ACC | CGA | CGA | GTT | CGT | GGT | GGT | GAC | GGC | AAA | ATG | AAA | GAG | CTC | AGC | CCC | AGA | TGG | TAT | TTC | TAT | TAC | CTA | GGA | ACT | GGC | CCA | GAA | GCT | TCA | CTT | CCC | TAC | GGC | GCT | AAC | AAA | GAA | GGC | ATC | GTA | TGG | GTC | GCA | ACT | GAG | GGA | GCC | TTG | AAT | ACA | CCG | AAA | GAT | CAC | ATC | GGC | ACC | CGC | AAT | CCT | AAT | AAC | AAT | GCT | GCC | ACC | GTG | CTA | CAA | CTT | CCT | CAA | GGA | ACA | ACA | TTG | CCA | AAA | GGC | TTC | TAC | GCA | GAG | GGG | AGC | AGA | GGC | GGC | AGT | CAA | GCC | TCT | TCT | CGC | TCT | TCA | TCA | CGT | AGT | CGC | GGT | AAT | TCA | AGA | AAT | TCA | ACT | CCT | GGC | AGC | AGT | AGG | GGA | AAT | TCT | CCT | GCT | CGA | ATG | GCT | AGC | GGA | GGT | GGT | GAA | ACT | GCC | CTC | GCG | CTA | TTG | CTG | CTA | GAC | AGA | TTG | AAC | CAG | CTT | GAG | AGC | AAA | GTT | TCT | GGT | AAA | GGC | CAA | CAA | CAA | CAA | GGC | CAA | ACT | GTC | ACT | AAG | AAA | TCT | GCT | GCT | GAG | GCA | TCC | AAA | AAG | CCT | CGC | CAA | AAA | CGT | ACT | GCT | ACA | AAA | CAG | TAC | AAC | GTC | ACT | CAA | GCA | TTT | GGG | AGG | CGT | GGT | CCA | GAA | CAA | ACC | CAA | GGA | AAC | TTC | GGG | GAC | CAA | GAC | CTA | ATC | AGA | CAA | GGA | ACT | GAT | TAC | AAA | CAT | TGG | CCG | CAA | ATT | GCA | CAA | TTT | GCT | CCG | AGT | GCC | TCT | GCA | TTC | TTC | GGA | ATG | TCA | CGC | ATT | GGC | ATG | GAA | GTC | ACA | CCT | TCG | GGA | ACA | TGG | CTG | ACT | TAT | CAT | GGA | GCC | ATT | AAA | TTG | GAT | GAC | AAA | GAT | CCA | CAA | TTC | AAA | GAC | AGC | GTC | ATA | CTG | CTG | AAC | AAG | CAC | ATT | GAC | GCA | TAC | AAA | ACA | TTC | CCA | CCA | ACA | GAG | CCT | AAA | AAG | GAC | AAA | AAG | AAA | AAG | ACT | GAT | GAA | GCT | CAG | CCT | TTA | CCG | CAG | AGA | CAA | AAG | AAG | CAG | CCC | ACT | GTG | ACT | CTT | CTT | CCT | GCG | GCT | GAC | ATG | GAT | GAT | TTC | TCC | AGA | CAA | CTT | CAA | AAT | TCC | ATG | AGT | GGAGCTTCT | GCT | GAT | TCA | ACT | CAG | GCA | TAA |
KY417152_Bat_SARS_like_CoV_Rs9401 | ATG | TCT | GAT | AAT | GGA | CCC | CAACCA | AAC | CAG | CGT | AGT | GCC | CCC | CGC | ATT | ACA | TTT | GGT | GGA | CCC | ACA | GAT | TCA | ACT | GAC | AAT | AAC | CAG | AAT | GGA | GGA | CGC | AAT | GGG | GCA | AGG | CCA | AAA | CAG | CGC | CGA | CCC | CAA | GGT | TTA | CCC | AAT | AAT | ACT | GCG | TCT | TGG | TTC | ACA | GCT | CTC | ACT | CAG | CAT | GGC | AAG | GAG | GAA | CTT | AGA | TTC | CCT | CGA | GGC | CAG | GGC | GTT | CCA | ATC | AAC | ACC | AAT | AGT | GGT | CCA | GAT | GAC | CAA | ATT | GGC | TAC | TAC | CGA | AGA | GCT | ACC | CGA | CGA | GTT | CGT | GGT | GGT | GAC | GGC | AAA | ATG | AAA | GAG | CTC | AGC | CCC | AGA | TGG | TAC | TTC | TAT | TAC | CTA | GGA | ACT | GGC | CCA | GAA | GCT | TCA | CTT | CCC | TAC | GGC | GCT | AAC | AAA | GAA | GGC | ATC | GTA | TGG | GTC | GCA | ACT | GAG | GGA | GCC | TTG | AAT | ACA | CCG | AAA | GAT | CAC | ATC | GGC | ACC | CGC | AAT | CCT | AAT | AAC | AAT | GCT | GCC | ACC | GTG | CTA | CAA | CTT | CCT | CAA | GGA | ACA | ACA | TTG | CCA | AAA | GGC | TTC | TAC | GCA | GAG | GGG | AGC | AGA | GGC | GGC | AGT | CAA | GCC | TCT | TCT | CGC | TCT | TCA | TCA | CGT | AGT | CGC | GGT | AAT | TCA | AGA | AAT | TCA | ACT | CCT | GGC | AGC | AGT | AGG | GGA | AAT | TCT | CCT | GCT | CGA | ATG | GCT | AGC | GGA | GGT | GGT | GAA | ACT | GCC | CTC | GCG | CTA | TTG | CTG | CTA | GAC | AGA | CTG | AAC | CAG | CTT | GAG | AGC | AAA | GTT | TCT | GGT | AAA | GGC | CAA | CAA | CAA | CAA | GGC | CAA | ACT | GTC | ACT | AAG | AAA | TCT | GCT | GCT | GAG | GCA | TCT | AAA | AAG | CCT | CGC | CAA | AAA | CGT | ACT | GCT | ACA | AAA | CAG | TAC | AAC | GTC | ACT | CAA | GCT | TTT | GGG | AGA | CGT | GGT | CCA | GAA | CAA | ACC | CAA | GGA | AAC | TTC | GGG | GAC | CAA | GAT | CTA | ATC | AGA | CAA | GGA | ACT | GAT | TAC | AAA | CAT | TGG | CCG | CAA | ATT | GCA | CAA | TTT | GCT | CCA | AGT | GCC | TCT | GCA | TTC | TTC | GGA | ATG | TCA | CGC | ATT | GGC | ATG | GAA | GTC | ACA | CCT | TCG | GGA | ACA | TGG | CTG | ACT | TAT | CAT | GGA | GCC | ATT | AAA | CTG | GAT | GAC | AAA | GAT | CCA | CAA | TTC | AAA | GAC | AAC | GTC | ATA | CTG | CTG | AAT | AAG | CAC | ATT | GAC | GCA | TAC | AAA | ACA | TTC | CCA | CCA | ACA | GAG | CCT | AAA | AAG | GAC | AAA | AAG | AAA | AAG | ACT | GAT | GAA | GCT | CAG | CCT | TTA | CCG | CAG | AGA | CAA | AAG | AAG | CAG | CCC | ACT | GTG | ACT | CTT | CTT | CCT | GCG | GCT | GAC | ATG | GAT | GAT | TTC | TCC | AGA | CAA | CTT | CAA | AAT | TCC | ATG | AGT | GGAGCTTCT | GCT | GAT | TCA | ACT | CAG | GCA | TAA |
KY417144_Bat_SARS_like_CoV_Rs4084 | ATG | TCT | GAT | AAT | GGA | CCC | CAATCA | AAC | CAG | CGT | AGT | GCC | CCC | CGC | ATT | ACA | TTT | GGT | GGA | CCC | ACA | GAT | TCA | ACT | GAC | AAT | AAC | CAG | AAT | GGA | GGA | CGC | AAT | GGG | GCA | AGG | CCG | AAA | CAG | CGC | CGA | CCC | CAG | GGT | TTA | CCC | AAT | AAT | ACT | GCG | TCT | TGG | TTC | ACA | GCT | CTC | ACT | CAG | CAT | GGC | AAG | GAG | GAA | CTT | AGA | TTC | CCT | CGA | GGC | CAG | GGT | GTT | CCA | ATC | AAC | ACC | AAT | AGT | GGT | CCA | GAT | GAC | CAA | ATT | GGC | TAC | TAC | CGA | AGA | GCT | ACC | CGA | CGA | GTT | CGT | GGT | GGT | GAC | GGC | AAA | ATG | AAA | GAG | CTC | AGC | CCC | AGA | TGG | TAC | TTC | TAT | TAC | CTA | GGA | ACT | GGC | CCA | GAA | GCT | TCA | CTT | CCC | TAC | GGC | GCT | AAC | AAA | GAA | GGC | ATC | GTA | TGG | GTC | GCA | ACT | GAG | GGA | GCC | TTG | AAC | ACA | CCC | AAA | GAC | CAC | ATT | GGC | ACC | CGC | AAT | CCT | AAT | AAC | AAT | GCT | GCC | ACC | GTG | CTA | CAA | CTT | CCT | CAA | GGA | ACA | ACA | TTG | CCA | AAA | GGC | TTC | TAC | GCA | GAG | GGG | AGC | AGA | GGC | GGC | AGT | CAA | GCC | TCT | TCT | CGC | TCT | TCG | TCA | CGT | AGT | CGC | GGT | AAT | TCA | AGA | AAT | TCA | ACT | CCT | GGC | AGC | AGT | AGG | GGA | AAT | TCT | CCT | GCT | CGA | ATG | GCT | AGC | GGA | GGT | GGT | GAA | ACT | GCC | CTC | GCG | CTA | TTG | CTG | CTA | GAC | AGA | TTG | AAC | CAG | CTT | GAG | AGC | AAA | GTT | TCT | GGT | AAA | GGC | CAA | CAA | CAA | CAA | GGC | CAA | ACT | GTC | ACT | AAG | AAA | TCT | GCT | GCT | GAG | GCA | TCT | AAA | AAG | CCT | CGC | CAA | AAA | CGT | ACT | GCT | ACA | AAA | CAG | TAC | AGC | GTC | ACT | CAA | GCA | TTT | GGG | AGA | CGT | GGT | CCA | GAA | CAA | ACC | CAA | GGA | AAC | TTC | GGG | GAC | CAA | GAC | CTA | ATC | AGA | CAA | GGA | ACT | GAT | TAT | AAA | CAT | TGG | CCG | CAA | ATT | GCA | CAA | TTT | GCT | CCA | AGT | GCC | TCT | GCA | TTC | TTC | GGA | ATG | TCA | CGC | ATT | GGC | ATG | GAA | GTC | ACA | CTT | TCG | GGA | ACA | TGG | CTG | ACT | TAT | CAT | GGA | GCC | ATT | AAA | TTG | GAT | GAC | AAA | GAT | CCA | CAA | TTC | AAA | GAC | AAC | GTC | ATA | CTG | CTG | AAT | AAG | CAC | ATT | GAC | GCA | TAC | AAA | ACA | TTC | CCA | CCA | ACA | GAG | CCT | AAA | AAG | GAC | AAA | AAG | AAA | AAG | ACT | GAT | GAA | GCT | CAG | CCT | TTA | CCG | CAG | AGA | CAA | AAG | AAG | CAG | CCC | ACT | GTG | ACT | CTT | CTT | CCT | GCG | GCT | GAC | ATG | GAT | GAT | TTC | TCC | AGA | CAA | CTT | CAA | AAT | TCC | ATG | AGT | GGAGCTTCT | GCT | GAT | TCA | ACT | CAG | GCA | TAA |
KF367457_Bat_SARS_like_CoV_WIV1 | ATG | TCT | GAT | AAT | GGA | CCC | CAATCA | AAC | CAG | CGT | AGT | GCC | CCC | CGC | ATT | ACA | TTT | GGT | GGA | CCC | ACA | GAT | TCA | ACT | GAC | AAT | AAC | CAG | AAT | GGA | GGA | CGC | AAT | GGG | GCA | AGG | CCA | AAA | CAA | CGC | CGA | CCC | CAA | GGT | TTA | CCC | AAT | AAT | ACT | GCG | TCT | TGG | TTC | ACA | GCT | CTC | ACT | CAG | CAT | GGC | AAG | GAG | GAA | CTT | AGA | TTC | CCT | CGA | GGC | CAG | GGC | GTT | CCA | ATC | AAC | ACC | AAT | AGT | GGT | CCA | GAT | GAC | CAA | ATT | GGC | TAC | TAC | CGA | AGA | GCT | ACC | CGA | CGA | GTT | CGT | GGT | GGT | GAC | GGC | AAA | ATG | AAA | GAG | CTC | AGC | CCC | AGA | TGG | TAC | TTC | TAT | TAC | CTA | GGA | ACT | GGC | CCA | GAA | GCT | TCA | CTT | CCC | TAC | GGC | GCT | AAC | AAA | GAA | GGC | ATC | GTA | TGG | GTC | GCA | ACT | GAG | GGA | GCC | TTG | AAC | ACA | CCC | AAA | GAC | CAC | ATT | GGC | ACC | CGC | AAT | CCT | AAT | AAC | AAT | GCT | GCC | ACC | GTG | CTA | CAA | CTT | CCT | CAA | GGA | ACA | ACA | TTG | CCA | AAA | GGC | TTC | TAT | GCA | GAG | GGG | AGC | AGA | GGT | GGC | AGT | CAA | GCC | TCT | TCT | CGC | TCT | TCA | TCA | CGT | AGT | CGC | GGT | AAT | TCA | AGA | AAT | TCA | ACT | CCT | GGC | AGC | AGT | AGG | GGA | AAT | TCT | CCT | GCT | CGA | ATG | GCT | AGC | GGA | GGT | GGT | GAA | ACT | GCC | CTC | GCG | CTA | TTG | CTG | CTA | GAC | AGA | TTG | AAC | CAG | CTT | GAG | AGC | AAA | GTT | TCT | GGT | AAA | GGC | CAA | CAA | CAA | CAA | GGC | CAA | ACT | GTC | ACT | AAG | AAA | TCT | GCT | GCT | GAG | GCA | TCT | AGA | AAG | CCT | CGC | CAA | AAA | CGT | ACT | GCT | ACA | AAA | CAG | TAC | AAC | GTC | ACT | CAA | GCT | TTT | GGG | AGA | CGT | GGT | CCA | GAA | CAA | ACT | CAA | GGA | AAC | TTC | GGG | GAC | CAA | GAC | CTA | ATC | AGA | CAA | GGA | ACT | GAT | TAC | AAA | CAT | TGG | CCG | CAA | ATT | GCA | CAA | TTT | GCT | CCA | AGT | GCG | TCT | GCA | TTC | TTC | GGA | ATG | TCA | CGC | ATT | GGC | ATG | GAA | GTC | ACA | CCT | TCG | GGA | ACA | TGG | CTG | ACT | TAT | CAT | GGA | GCC | ATT | AAA | TTG | GAT | GAC | AAA | GAT | CCA | CAA | TTC | AAA | GAC | AAC | GTC | ATA | TTG | CTG | AAC | AAG | CAC | ATT | GAC | GCA | TAC | AAA | ACA | TTC | CCA | CCA | ACA | GAG | CCT | AAA | AAG | GAC | AAA | AAG | AAA | AAG | ACT | GAT | GAA | GCT | CAG | CCT | TTA | CCG | CAG | AGA | CAA | AAG | AAG | CAA | CCC | ACT | GTG | ACT | CTT | CTC | CCT | GCG | GCT | GAC | ATG | GAT | GAT | TTC | TCC | AGA | CAA | CTT | CAA | AAT | TCC | ATG | AGT | GGAGCTTCT | GCT | GAT | TCA | ACT | CAG | GCA | TAA |
KU973692_UNVERIFIED_SARS_related_CoV_F46 | ATG | TCT | GAT | AAT | GGA | CCC | CAACAA | AAC | CAA | CGT | AGT | GCC | CCC | CGC | ATT | ACA | TTT | GGT | GGA | CCC | ACA | GAT | TCA | GCT | GAC | AAT | AAC | CAG | AAT | GGA | GGA | CGC | AAT | GGG | GCA | AGG | CCA | AAA | CAA | CGC | CGA | CCC | CAA | GGT | TTA | CCC | AAT | AAT | ACT | GCG | TCT | TGG | TTC | ACA | GCT | CTC | ACT | CAG | CAT | GGC | AAG | GAG | GAA | CTT | AGA | TTC | CCT | CGA | GGC | CAG | GGC | GTT | CCA | ATC | AAC | ACC | AAT | AGT | GGT | CCA | GAT | GAC | CAA | ATT | GGC | TAC | TAC | CGA | AGA | GCT | ACC | CGA | CGA | GTT | CGT | GGT | GGT | GAC | GGC | AAA | ATG | AAG | GAG | CTC | AGC | CCC | AGA | TGG | TAC | TTC | TAC | TAC | CTA | GGA | ACT | GGC | CCA | GAA | GCT | TCA | CTT | CCC | TAC | GGC | GCT | AAC | AAA | GAA | GGC | ATC | GTA | TGG | GTC | GCA | ACT | GAG | GGA | GCC | TTG | AAT | ACA | CCA | AAA | GAT | CAC | ATC | GGC | ACC | CGC | AAT | CCT | AAC | AAC | AAT | GCT | GCC | ATC | GTG | CTA | CAA | CTT | CCT | CAA | GGA | ACA | ACA | TTG | CCA | AAA | GGC | TTC | TAC | GCA | GAG | GGA | AGC | AGA | GGC | GGC | AGT | CAA | GCC | TCT | TCT | CGC | TCC | TCA | TCA | CGT | AGT | CGC | GGT | AAT | TCA | AGA | AAT | TCA | ACT | CCT | GGC | AGC | AGT | AGG | GGA | AAT | TCT | CCT | GCT | CGA | ATG | GCT | AGC | GGA | GGT | GGT | GAA | ACT | GCC | CTC | GCG | CTA | TTG | CTG | CTA | GAC | AGA | CTG | AAC | CAG | CTT | GAG | AGC | AAA | GTT | TCT | GGT | AAA | GGC | CAA | CAA | CAA | CAA | GGC | CAA | ACT | GTC | ACT | AAG | AAA | TCT | GCT | GCT | GAG | GCA | TCC | AAA | AAG | CCT | CGC | CAA | AAA | CGT | ACT | GCT | ACA | AAA | CAG | TAC | AAC | GTC | ACT | CAA | GCA | TTT | GGG | CGA | CGT | GGT | CCA | GAA | CAA | ACC | CAA | GGA | AAC | TTC | GGG | GAC | CAA | GAA | TTA | ATC | AGA | CAA | GGA | ACT | GAT | TAC | AAA | CAT | TGG | CCG | CAA | ATT | GCA | CAA | TTT | GCT | CCA | AGT | GCC | TCT | GCA | TTC | TTC | GGA | ATG | TCA | CGC | ATT | GGC | ATG | GAA | GTC | ACA | CCT | TCG | GGA | ACA | TGG | CTG | ACT | TAT | CAT | GGA | GCC | ATT | AAA | TTG | GAT | GAC | AAA | GAT | CCA | CAA | TTC | AAA | GAC | AAC | GTC | ATA | ATG | CTG | AAT | AAG | CAC | ATT | GAC | GCA | TAC | AAA | ACA | TTC | CCA | CCA | ACA | GAG | CCT | AAA | AAG | GAC | AAA | AAG | AAA | AAG | ACT | GAT | GAA | GCT | CAG | CCT | TTA | CCG | CAG | AGA | CAA | AAG | AAG | CAG | CAC | ACT | GTG | ACT | CTT | CTT | CCT | GCG | GCT | GAC | ATG | GAT | GAT | TTC | TCC | AGA | CAA | CTT | CAA | AAT | TCC | ATG | AGT | GGAGCTTCT | GCT | GAT | TCA | ACT | CAG | GCA | TAA |
KY417145_Bat_SARS_like_CoV_Rf4092 | ATG | TCT | GAT | AAT | GGA | CCC | CAATCA | AAC | CAG | CGT | AGT | GCC | CCC | CGC | ATT | ACA | TTT | GGT | GGA | CCC | ACA | GAT | TCA | ACT | GAC | AAT | AAC | CAG | AAT | GGA | GGA | CGC | AAT | GGG | GCA | AGG | TCG | AAA | CAG | CGC | CGA | CCC | CAG | GGT | TTA | CCC | AAT | AAT | ACT | GCG | TCT | TGG | TTC | ACA | GCT | CTC | ACT | CAG | CAT | GGC | AAG | GAG | GAA | CTT | AGA | TTC | CCT | CGA | GGC | CAG | GGC | GTT | CCA | ATC | AAC | ACC | AAT | AGT | GGT | CCA | GAT | GAC | CAA | ATT | GGC | TAC | TAC | CGA | AGA | GCT | ACC | CGA | CGA | GTT | CGT | GGT | GGT | GAC | GGC | AAA | ATG | AAA | GAG | CTC | AGC | CCC | AGA | TGG | TAC | TTC | TAT | TAC | CTA | GGA | ACT | GGC | CCA | GAA | GCT | TCA | CTT | CTC | TAC | GGC | GCT | AAC | AAA | GAA | GGC | ATC | GTA | TGG | GTC | GCA | ACT | GAG | GGA | GCC | TTG | AAC | ACA | CCC | AAA | GAC | CAC | ATT | GGC | ACC | CGC | AAT | CCT | AAT | AAC | AAT | GCT | GCC | ACC | GTG | CTA | CAA | CTT | CCT | CAA | GGA | ACA | ACA | TTG | CCA | AAA | GGC | TTC | TAT | GCA | GAG | GGG | AGC | AGA | GGT | GGC | AGT | CAA | GCC | TCT | TCT | CGC | TCT | TCA | TCA | CGT | AGT | CGC | GGT | AAT | TCA | AGA | AAT | TCA | ACT | CCT | GGC | AGC | AGT | AGG | GGA | AAT | TCT | CCT | GCT | CGA | ATG | GCT | AGC | GGA | GGT | GGT | GAA | ACT | GCC | CTC | GCG | CTA | TTG | CTG | CTA | GAC | AGA | TTG | AAC | CAG | CTT | GAG | AGC | AAA | GTT | TCT | GGT | AAA | GGC | CAA | CAA | CAA | CAA | GGC | CAA | ACT | GTC | ACT | AAG | AAA | TCT | GCT | GCT | GAG | GCA | TCT | AAA | AAG | CCT | CGC | CAA | AAA | CGT | ACT | GCT | ACA | AAA | CAG | TAC | AAC | GTC | ACT | CAA | GCT | TTT | GGG | AGA | CGC | GGT | CCA | GAA | CAA | ACT | CAA | GGA | AAC | TTC | GGG | GAC | CAA | GAC | CTA | ATC | AGA | CAA | GGA | ACT | GAT | TAC | AAA | CAT | TGG | CCG | CAA | ATT | GCA | CAA | TTT | GCT | CCA | AGT | GCG | TCT | GCA | TTC | TTC | GGA | ATG | TCA | CGC | ATT | GGC | ATG | GAA | GTC | ACA | CCT | TCG | GGA | ACA | TGG | CTG | ACT | TAT | CAT | GGA | GCC | ATT | AAA | TTG | GAT | GAC | AAA | GAT | CCA | CAA | TTC | AAA | GAC | AAC | GTC | ATA | TTG | CTG | AAC | AAG | CAC | ATT | GAC | GCA | TAC | AAA | ACA | TTC | CCA | CCA | ACA | GAG | CCT | AAA | AAG | GAC | AAA | AAG | AAA | AAG | ACT | GAT | GAA | GCT | CAG | CCT | TTA | CCG | CAG | AGA | CAA | AAG | AAG | CAG | CCC | ACT | GTG | ACT | CTT | CTT | CCT | GCG | GCT | GAC | ATG | GAT | GAT | TTC | TCC | AGA | CAA | CTT | CAA | AGT | TCC | ATG | AGT | GGAGCTTCT | GCT | GAT | TCA | ACT | CAG | GCA | TAA |
KJ473816_BtRs_BetaCoV_YN2013 | ATG | TCT | GAT | AAT | GGA | CCC | CAACCA | AAC | CAG | CGT | AGT | GCC | CCC | CGC | ATT | ACA | TTT | GGT | GGA | CCC | ACA | GAT | TCA | ACT | GAC | AAT | AAC | CAG | GAT | GGA | GGA | CGC | AGT | GGT | GCA | CGG | CCA | AAG | CAA | CGC | CGA | CCC | CAA | GGT | TTA | CCC | AAT | AAT | ACT | GCG | TCT | TGG | TTC | ACA | GCT | CTC | ACT | CAG | CAT | GGC | AAG | GAG | GAA | CTT | AGA | TTC | CCT | CGA | GGC | CAG | GGC | GTT | CCA | ATC | AAC | ACC | AAT | AGT | GGT | CCA | GAT | GAC | CAA | ATT | GGC | TAC | TAC | CGA | AGA | GCT | ACC | CGA | CGA | GTT | CGT | GGT | GGT | GAC | GGC | AAA | ATG | AAA | GAG | CTC | AGC | CCC | AGA | TGG | TAT | TTC | TAT | TAC | CTA | GGA | ACT | GGC | CCA | GAA | GCT | TCA | CTT | CCC | TAC | GGC | GCT | AAC | AAA | GAG | GGC | ATC | GTA | TGG | GTT | GCA | ACT | GAG | GGA | GCC | TTG | AAC | ACA | CCC | AAA | GAC | CAC | ATT | GGC | ACT | CGC | AAT | CCT | AAT | AAC | AAT | GCT | GCC | ATC | GTG | CTA | CAA | CTT | CCT | CAA | GGA | ACA | ACA | TTG | CCA | AAA | GGC | TTC | TAC | GCA | GAG | GGG | AGC | AGA | GGC | GGC | AGT | CAA | GCC | TCT | TCT | CGC | TCT | TCA | TCA | CGT | AGT | CGC | GGT | AAT | TCA | AGA | AAT | TCA | ACT | CCT | GGC | AGC | AGT | AGG | GGA | AAT | TCT | CCT | GCT | CGA | ATG | GCT | AGC | GGA | GGT | GGT | GAA | ACT | GCC | CTC | GCG | CTA | TTG | CTG | CTA | GAC | AGA | TTG | AAC | CAG | CTT | GAG | AGC | AAA | GTT | TCT | GGT | AAA | GGC | CAA | CAA | CAA | CAA | GGC | CAA | ACT | GTC | ACT | AAG | AAA | TCT | GCT | GCT | GAG | GCA | TCT | AAA | AAG | CCT | CGT | CAA | AAA | CGT | ACT | GCC | ACC | AAG | GTG | TAT | AAC | GTC | ACT | CAA | GCA | TTT | GGG | AGA | CGT | GGT | CCA | GAA | CAA | ACC | CAA | GGA | AAT | TTT | GGG | GAC | CAA | GAA | CTA | ATC | AGA | CAA | GGA | ACT | GAT | TAC | AAA | CAT | TGG | CCG | CAA | ATT | GCA | CAA | TTT | GCT | CCG | AGT | GCC | TCT | GCA | TTC | TTC | GGA | ATG | TCA | CGC | ATT | GGC | ATG | GAA | GTC | ACA | CCT | TCG | GGA | ACA | TGG | CTG | ACT | TAT | CAT | GGA | GCC | ATT | AAA | TTG | GAT | GAC | AAA | GAT | CCA | CAA | TTC | AAA | GAC | AAC | GTC | ATA | CTG | CTG | AAC | AAG | CAC | ATT | GAC | GCA | TAT | AAA | ACA | TTC | CCA | CCA | ACA | GAG | CCT | AAA | AAG | GAT | AAA | AAG | AAA | AAG | ACT | GAT | GAA | GCT | CAG | CCT | TTA | CCG | CAG | AGA | CAA | AAG | AAG | CAG | CCC | ACT | GTG | ACT | CTT | CTT | CCT | GCG | GCT | GAC | ATG | GAT | GAT | TTC | TCC | AGA | CAA | CTT | CAA | AAT | TCC | ATG | GGT | GGAGCTTCT | GCT | GAT | TCA | ACT | CAG | GCA | TAA |
KY770858_Bat_CoV_Anlong_103 | ATG | TCT | GAT | AAT | GGA | CCC | CAACCA | AGC | CAA | CGT | AGT | GCC | CCC | CGC | ATT | ACA | TTT | GGT | GGA | CCC | ACA | GAT | TCA | ATT | GAC | AAT | AAC | CAG | AAT | GGA | GGA | CGC | AAT | GGG | GCA | AGG | CCA | AAA | CAA | CGC | CGA | CCC | CAA | GGT | TTA | CCC | AAT | AAT | ACT | GCG | TCT | TGG | TTC | ACA | GCT | CTC | ACT | CAG | CAT | GGC | AAG | GAG | GAA | CTT | AGA | TTC | TCT | CGA | GGC | CAG | GGC | GTC | CCT | ATC | AAC | ACC | AAT | AGT | GGT | CCA | GAT | GAC | CAA | ATT | GGC | TAC | TAC | CGA | AGA | GCT | ACC | CGA | CGA | GTT | CGT | GGT | GGT | GAC | GGC | AAA | ATG | AAA | GAG | CTC | AGC | CCC | AGA | TGG | TAC | TTC | TAT | TAC | CTA | GGA | ACT | GGC | CCA | GAA | GCT | TCA | CTT | CCC | TAC | GGC | GCT | AAC | AAA | GAA | GGC | ATC | GTA | TGG | GTC | GCA | ACT | GAG | GGA | GCC | TTG | AAC | ACA | CCT | AAA | GAT | CAC | ATT | GGC | ACC | CGC | AAT | CCT | AAT | AAC | AAT | GCT | GCC | ACC | GTG | CTA | CAA | CTT | CCT | CAA | GGA | ACA | ACA | TTG | CCA | AAA | GGC | TTC | TAC | GCA | GAA | GGG | AGC | AGA | GGC | GGC | AGT | CAA | GCC | TCT | TCT | CGC | TCC | TCA | TCA | CGT | AGT | CGC | GGT | AAT | TCA | AGA | AAT | TCG | ACT | CCT | GGC | AGC | AGT | AGG | GGA | AAT | TCT | CCT | GCT | CGA | ATG | GCT | AGC | GGA | GGT | GGT | GAA | ACT | GCC | CTC | GCG | CTA | TTG | CTG | CTA | GAC | AGA | TTG | AAC | CAG | CTT | GAG | AGC | AAA | GTT | TCT | GGT | AAA | GGC | --- | CAA | CAA | CAA | GGC | CAA | ACT | GTC | ACT | AAG | AAA | TCT | GCT | GCT | GAG | GCA | TCC | AAA | AAG | CCT | CGC | CAA | AAA | CGT | ACT | GCT | ACA | AAA | CAG | TAC | AAC | GTC | ACT | CAA | GCA | TTT | GGG | AGG | CGT | GGT | CCA | GAA | CAA | ACC | CAA | GGA | AAC | TTT | GGG | GAC | CAA | GAA | CTA | ATC | AGA | CAA | GGA | ACT | GAT | TAC | AAA | CAT | TGG | CCG | CAA | ATT | GCA | CAA | TTT | GCT | CCA | AGT | GCA | TCT | GCA | TTC | TTC | GGA | ATG | TCA | CGC | ATT | GGC | ATG | GAA | GTC | ACA | CCT | TCG | GGA | ACA | TGG | CTG | ACT | TAT | CAT | GGA | GCC | ATT | AAA | TTG | GAT | GAT | AAA | GAT | CCA | CAA | TTC | AAA | GAC | AAC | GTC | ATA | TTG | CTG | AAT | AAG | CAC | ATT | GAC | GCA | TAC | AAA | ACA | TTC | CCA | CCA | ACA | GAG | CCT | AAA | AAG | GAC | AAA | AAG | AAA | AAG | ACT | GAT | GAA | GCT | CAG | CCT | TTA | CCG | CAG | AGA | CAA | AAG | AAG | CAG | CCC | ATT | GTG | ACT | CTT | CTT | CCT | GCG | GCT | GAC | ATG | GAT | GAT | TTC | TCC | AGA | CAA | CTT | CAA | AAT | TCC | ATG | AGT | GGAGCTTCT | GCT | GAT | TCA | ACT | CAG | GCA | TAA |
KY417143_Bat_SARS_like_CoV_Rs4081 | ATG | TCT | GAT | AAT | GGA | CCC | CAACCA | AAC | CAG | CGT | AGT | GCC | CCC | CGC | ATT | ACA | TTT | GGT | GGA | CCC | ACA | GAT | CCA | ACT | GAC | AAT | AAC | CAG | AAT | GGA | GGA | CGC | AAT | GGG | GCA | AGG | CCA | AAA | CAA | CGC | CGA | CCC | CAA | GGT | TTA | CCC | AAT | AAT | ACT | GCG | TCT | TGG | TTC | ACA | GCT | CTC | ACT | CAG | CAT | GGC | AAG | GAG | GAA | CTT | AGA | TTC | CCT | CGA | GGC | CAG | GGC | GTT | CCA | ATC | AAC | ACC | AAT | AGT | GGT | CCA | GAT | GAC | CAA | ATT | GGC | TAC | TAC | CGA | AGA | GCT | ACC | CGA | CGA | GTT | CGT | GGT | GGT | GAC | GGC | AAA | ATG | AAA | GAG | CTC | AGC | CCC | AGA | TGG | TAC | TTT | TAT | TAC | CTA | GGA | ACC | GGC | CCA | GAA | GCT | TCA | CTT | CCC | TAC | GGC | GCT | AAC | AAA | GAA | GGC | ATC | GTA | TGG | GTC | GCA | ACT | GAG | GGA | GCC | TTG | AAC | ACA | CCT | AAA | GAT | CAC | ATT | GGC | ACC | CGC | AAT | CCT | AAT | AAC | AAT | GCT | GCC | ACC | GTG | CTA | CAA | CTT | CCT | CAA | GGA | ACA | ACA | TTG | CCA | AAA | GGC | TTC | TAC | GCA | GAA | GGG | AGC | AGA | GGC | GGC | AGT | CAA | GCC | TCT | TCT | CGC | TCT | TCA | TCA | CGT | AGT | CGC | GGC | GAT | TCA | AGA | AAT | TCA | ACT | CCT | GGC | AGC | AGT | AGG | GGA | AAC | TCT | CCT | GCT | CGA | ATG | GCT | AGC | GGA | GGT | GGT | GAA | ACT | GCC | CTC | GCG | CTA | TTG | CTG | CTA | GAC | AGA | TTG | AAC | CAG | CTT | GAG | AGC | AAA | GTT | TCT | GGT | AAA | GGC | CAA | CAA | CAA | CAA | GGC | CAA | ACT | GTC | ACT | AAG | AAA | TCT | GCT | GCT | GAG | GCA | TCC | AAA | AAG | CCT | CGC | CAA | AAA | CGT | ACT | GCT | ACA | AAA | CAG | TAC | AAC | GTC | ACT | CAA | GCA | TTT | GGG | AGG | CGT | GGT | CCA | GAA | CAA | ACC | CAA | GGA | AAC | TTC | GGG | GAC | CAA | GAC | CTA | ATC | AGA | CAA | GGA | ACT | GAT | TAC | AAA | CAT | TGG | CCG | CAA | ATT | GCA | CAA | TTT | GCT | CCG | AGT | GCC | TCT | GCA | TTC | TTC | GGA | ATG | TCA | CGC | ATT | GGC | ATG | GAA | GTC | ACA | CCT | TCG | GGA | ACA | TGG | CTG | ACT | TAT | CAT | GGA | GCC | ATT | AAA | TTG | GAT | GAC | AAA | GAT | CCA | CAA | TTC | AAA | GAC | AAC | GTC | ATA | CTG | CTG | AAC | AAG | CAC | ATT | GAC | GCA | TAC | AAA | ACA | TTC | CCA | CCA | ACA | GAG | CCT | AAA | AAG | GAC | AAA | AAG | AAA | AAG | ACT | GAT | GAA | GCT | CAG | CCT | TTA | CCG | CAG | AGA | CAA | AAG | AAG | CAG | CCC | ACT | GTG | ACT | CTT | CTT | CCT | GCG | GCT | GAC | ATG | GAT | GAT | TTC | TCC | AGA | CAA | CTT | CAA | AAT | TCC | ATG | AGT | GGAGCTTCT | GCT | GAT | TCA | ACT | CAG | GCA | TAA |
KY417149_Bat_SARS_like_CoV_Rs4255 | ATG | TCT | GAT | AAT | GGA | CCC | CAATCA | AAC | CAG | CGT | AGT | GCC | CCC | CGC | ATT | ACA | TTT | GGT | GGA | CCC | ACA | GAT | TCA | ACT | GAC | AAT | AAC | CAG | AAT | GGA | GGA | CGC | AAT | GGG | ACA | AGG | CCG | AAA | CAG | CGC | CGA | CCC | CAG | GGT | TTA | CCC | AAT | AAT | ACT | GCG | TCT | TGG | TTC | ACA | GCT | CTC | ACT | CAG | CAT | GGC | AAG | GAG | GAA | CTT | AGA | TTC | CCT | CGA | GGC | CAG | GGC | GTT | CCA | ATC | AAC | ACC | AAT | AGT | GGT | CCA | GAT | GAC | CAA | ATT | GGC | TAC | TAC | CGA | AGA | GCT | ACC | CGA | CGA | GTT | CGT | GGT | GGT | GAC | GGC | AAA | ATG | AAA | GAG | CTC | AGC | CCC | AGA | TGG | TAC | TTC | TAT | TAC | CTA | GGA | ACT | GGC | CCA | GAA | GCT | TCA | CTT | CCC | TAC | GGC | GCT | AAC | AAA | GAA | GGC | ATC | GTA | TGG | GTC | GCA | ACT | GAG | GGA | GCC | TTG | AAC | ACA | CCC | AAA | GAC | CAC | ATT | GGC | ACC | CGC | AAT | CCT | AAT | AAT | AAT | GCT | GCC | ACC | GTG | CTA | CAA | CTT | CCT | CAA | GGA | ACA | ACA | TTG | CCA | AAA | GGC | TTC | TAC | GCA | GAG | GGG | AGC | AGA | GGC | GGC | AGT | CAA | GCC | TCT | TCT | CGC | TCT | TCA | TCA | CGT | AGT | CGC | GGT | AAT | TCA | AGA | AAT | TCA | ACT | CCT | GGC | AGC | AGT | AGG | GGA | AAC | TCT | CCT | GCT | CGA | ATG | GCT | AGC | GGA | GGT | GGT | GAA | ACT | GCC | CTC | GCG | CTA | TTG | CTG | CTA | GAC | AGA | TTG | AAC | CAG | CTT | GAG | AGC | AAA | GTT | TCT | GGT | AAA | GGC | CAA | CAA | CAA | CAA | GGC | CAA | ACT | GTC | ACT | AAG | AAA | TCT | GCT | GCT | GAG | GCA | TCT | AAA | AAG | CCT | CGC | CAA | AAA | CGT | ACT | GCT | ACA | AAA | CAG | TAC | AAC | GTC | ACT | CAA | GCA | TTT | GGG | AGG | CGT | GGT | CCA | GAA | CAA | ACC | CAA | GGA | AAC | TTC | GGG | GAC | CAA | GAC | CTA | ATC | AGA | CAA | GGA | ACT | GAC | TAC | AAA | CAT | TGG | CCG | CAA | ATT | GCA | CAA | TTT | GCT | CCG | AGT | GCC | TCT | GCA | TTC | TTC | GGA | ATG | TCA | CGC | ATT | GGC | ATG | GAA | GTC | ACA | CCT | TCG | GGA | ACA | TGG | CTG | ACT | TAT | CAT | GGA | GCC | ATT | AAA | TTG | GAT | GAC | AAA | GAT | CCA | CAA | TTC | AAA | GAC | AAC | GTC | ATA | CTG | CTG | AAC | AAG | CAT | ATT | GAC | GCA | TAC | AAA | ACA | TTC | CCA | CCA | ACA | GAG | CCT | AAA | AAG | GAC | AAA | AAG | AAA | AAG | ACT | GAT | GAA | GCT | CAG | CCT | TTA | CCG | CAG | AGA | CAA | AAG | AAG | CAG | CCC | ACT | GTG | ACT | CTT | CTT | CCT | GCG | GCT | GAC | ATG | GAT | GAT | TTC | TCC | AGA | CAA | CTT | CAA | AAT | TCC | ATG | AGT | GGAGCTTCT | GCT | GAT | TCA | ACT | CAG | GCA | TAA |
MK211378_CoV_BtRs_BetaCoV_YN2018D | ATG | TCT | GAT | AAT | GGA | CCC | CAACCA | AAC | CAG | CGT | AGT | GCC | CCC | CGC | ATT | ACA | TTT | GGT | GGA | CCC | ACA | GAT | TCA | ACT | GAC | AAT | AAC | CAG | AAT | GGA | GGA | CGC | AAT | GGG | GCA | AGG | CCA | AAA | CAA | CGC | CGA | CCC | CAA | GGT | TTA | CCC | AAT | AAT | ACT | GCG | TCT | TGG | TTC | ACA | GCT | CTC | ACT | CAG | CAT | GGC | AAG | GAG | GAA | CTT | AGA | TTC | CCT | CGA | GGC | CAG | GGC | GTT | CCA | ATC | AAC | ACC | AAT | AGT | GGT | CCA | GAT | GAC | CAA | ATT | GGC | TAC | TAC | CGA | AGA | GCT | ACC | CGA | CGA | GTT | CGT | GGT | GGT | GAC | GGC | AAA | ATG | AAA | GAG | CTC | AGC | CCC | AGA | TGG | TAC | TTC | TAT | TAC | CTA | GGA | ACT | GGC | CCA | GAA | GCT | TCA | CTT | CCC | TAC | GGC | GCT | AAC | AAA | GAA | GGC | ATC | GTA | TGG | GTC | GCA | ACT | GAG | GGA | GCC | TTG | AAT | ACA | CCG | AAA | GAT | CAC | ATT | GGC | ACC | CGC | AAT | CCT | AAT | AAC | AAT | GCT | GCC | ACC | GTG | CTA | CAA | CTT | CCT | CAA | GGA | ACA | ACA | TTG | CCA | AAA | GGC | TTC | TAC | GCA | GAG | GGG | AGC | AGA | GGC | GGC | AGT | CAA | GCC | TCT | TCT | CGC | TCT | TCA | TCA | CGT | AGT | CGC | GGT | AAT | TCA | AGA | AAT | TCA | ACT | CCT | GGC | AGC | AGT | AGG | GGA | AAT | TCT | CCT | GCT | CGA | ATG | GCT | AGC | GGA | GGT | GGT | GAA | ACT | GCC | CTC | GCG | CTA | TTG | CTG | CTA | GAC | AGA | CTG | AAC | CAG | CTT | GAG | AGC | AAA | GTT | TCT | GGT | AAA | GGC | CAA | CAA | CAA | CAA | GGC | CAA | ACT | GTC | ACT | AAG | AAA | TCT | GCT | GCT | GAG | GCA | TCT | AAA | AAG | CCT | CGC | CAA | AAA | CGT | ACT | GCT | ACA | AAA | CAG | TAC | AAC | GTC | ACT | CAA | GCT | TTT | GGG | AGA | CGT | GGT | CCA | GAA | CAA | ACC | CAA | GGA | AAC | TTC | GGG | GAC | CAA | GAT | CTA | ATC | AGA | CAA | GGA | ACT | GAT | TAC | AAA | CAT | TGG | CCG | CAA | ATT | GCA | CAA | TTT | GCT | CCA | AGT | GCC | TCT | GCA | TTC | TTC | GGA | ATG | TCA | CGC | ATT | GGC | ATG | GAA | GTC | ACA | CCT | TCG | GGA | ACA | TGG | CTG | ACT | TAT | CAT | GGA | GCC | ATT | AAA | CTG | GAT | GAC | AAA | GAT | CCA | CAA | TTC | AAA | GAC | AAC | GTC | ATA | CTG | CTG | AAT | AAG | CAC | ATT | GAC | GCA | TAC | AAA | ACA | TTC | CCA | CCA | ACA | GAG | CCT | AAA | AAG | GAC | AAA | AAG | AAA | AAG | ACT | GAT | GAA | GCT | CAG | CCT | TTA | CCG | CAG | AGA | CAA | AAG | AAG | CAG | CCC | ACT | GTG | ACT | CTT | CTT | CCT | GCG | GCT | GAC | ATG | GAT | GAT | TTC | TCC | AGA | CAA | CTT | CAA | AAT | TCC | ATG | AGT | GGAGCTTCT | GCT | GAT | TCA | ACT | CAG | GCA | TAA |
FJ588686_Bat_SARS_CoV_Rs672_2006 | ATG | TCT | GAT | AAT | GGA | CCC | CAACCA | AAC | CAG | CGT | AGT | GCC | CCC | CGC | ATT | ACA | TTT | GGT | GGA | CCC | ACA | GAT | TCA | ACT | GAC | AAT | AAC | CAG | GAT | GGA | GGA | CGC | AGT | GGT | GCA | CGG | CCA | AAG | CAA | CGC | CGA | CCC | CAA | GGT | TTA | CCC | AAT | AAT | ACT | GCG | TCT | TGG | TTC | ACA | GCT | CTC | ACT | CAG | CAC | GGC | AAG | GAG | GAA | CTT | AGA | TTC | CCT | CGA | GGC | CAG | GGC | GTT | CCA | ATC | AAC | ACC | AAT | AGT | GGT | AAA | GAT | GAC | CAA | ATT | GGC | TAC | TAC | CGA | AGA | GCT | ACC | CGA | CGA | GTT | CGT | GGT | GGT | GAC | GGC | AAA | ATG | AAA | GAG | CTC | AGC | CCC | AGA | TGG | TAC | TTC | TAT | TAC | CTA | GGA | ACT | GGC | CCA | GAA | GCT | TCA | CTT | CCC | TAC | GGC | GCT | AAC | AAA | CAA | GGC | ATC | GTA | TGG | GTC | GCA | ACT | GAG | GGA | GCC | CTG | AAC | ACA | CCT | AAA | GAT | CAC | ATT | GGC | ACC | CGC | AAT | CCT | AAT | AAC | AAT | GCT | GCC | ATC | GTG | CTA | CAA | CTT | CCT | CAA | GGA | ACA | ACA | TTG | CCA | AAG | GGC | TTC | TAC | GCA | GAG | GGG | AGC | AGA | GGC | GGC | AGT | CAA | GCC | TCT | TCT | CGC | TCT | TCA | TCA | CGT | AGT | CGC | GGT | AAT | TCA | AGA | AAT | TCA | ACT | CCT | GGC | AGC | AGT | AGG | GGA | AAT | TCT | CCT | GCT | CGA | ATG | GCT | AGC | GGA | GGT | GGT | GAA | ACT | GCC | CTC | GCG | CTA | TTG | CTG | CTA | GAC | CGA | TTA | AAC | CAG | CTT | GAG | AGC | AAA | GTT | TCT | GGT | AAA | GGC | CAA | CAA | CAA | CAA | GGC | CAA | ACT | GTC | ACT | AAG | AAA | TCT | GCT | GCT | GAG | GCA | TCC | AAA | AAG | CCT | CGC | CAA | AAA | CGT | ACT | GCT | ACA | AAA | CAG | TAC | AAC | GTC | ACT | CAA | GCA | TTT | GGG | AGG | CGT | GGT | CCA | GAA | CAA | ACC | CAA | GGA | AAC | TTC | GGG | GAC | CAA | GAC | CTA | ATC | AGA | CAA | GGA | ACT | GAT | TAC | AAA | CAT | TGG | CCG | CAA | ATT | GCA | CAA | TTT | GCT | CCA | AGT | GCC | TCT | GCA | TTC | TTT | GGG | ATG | TCA | CGC | ATT | GGC | ATG | GAA | GTC | ACA | CCT | TCG | GGA | ACA | TGG | CTG | ACT | TAT | CAT | GGA | GCC | ATT | AAA | TTG | GAT | GAC | AAA | GAT | CCA | CAA | TTC | AAA | GAC | AAC | GTC | ATA | CTG | CTG | AAC | AAG | CAC | ATT | GAC | GCA | TAC | AAA | ACA | TTC | CCA | CCA | ACA | GAG | CCT | AAA | AAG | GAC | AAA | AAG | AAA | AAG | ACT | GAT | GAA | GCT | CAG | CCT | TTA | CCG | CAG | AGA | CAA | AAG | AAG | CAG | CCC | ACT | GTG | ACT | CTT | CTT | CCT | GCG | GCT | GAC | ATG | GAT | GAT | TTC | TCC | AGA | CAA | CTT | CAA | AAT | TCC | ATG | AGT | GGAGCTTCT | GCT | GAT | TCA | ACT | CAG | GCA | TAA |
MK211377_CoV_BtRs_BetaCoV_YN2018C | ATG | TCT | GAT | AAT | GGA | CCC | CAATCA | AAC | CAG | CGT | AGT | GCC | CCC | CGC | ATT | ACA | TTT | GGT | GGA | CCC | ACA | GAT | TCA | ACT | GAC | AAT | AAC | CAG | AAT | GGA | GGA | CGC | AAT | GGG | GCA | AGG | CCA | AAA | CAG | CGC | CGA | CCC | CAA | GGT | TTA | CCC | AAT | AAT | ACT | GCG | TCT | TGG | TTC | ACA | GCT | CTC | ACT | CAG | CAT | GGC | AAG | GAG | GAA | CTT | AGA | TTC | CCT | CGA | GGC | CAG | GGC | GTT | CCA | ATC | AAC | ACC | AAT | AGT | GGT | CCA | GAT | GAC | CAA | ATT | GGC | TAC | TAC | CGA | AGA | GCT | ACC | CGA | CGA | GTT | CGT | GGT | GGT | GAC | GGC | AAA | ATG | AAA | GAG | CTC | AGC | CCC | AGA | TGG | TAC | TTC | TAT | TAC | CTA | GGA | ACT | GGC | CCA | GAA | GCT | TCA | CTT | CCC | TAC | GGC | GCT | AAC | AAA | GAA | GGC | ATC | GTA | TGG | GTC | GCA | ACT | GAG | GGA | GCC | TTG | AAC | ACA | CCT | AAA | GAC | CAC | ATT | GGC | ACC | CGC | AAT | CCT | AAT | AAC | AAT | GCT | GCC | ACC | GTG | CTA | CAA | CTT | CCT | CAA | GGA | ACA | ACA | TTG | CCA | AAA | GGC | TTC | TAC | GCA | GAG | GGG | AGC | AGA | GGC | GGC | AGT | CAA | GCC | TCT | TCT | CGC | TCT | TCA | TCA | CGT | AGT | CGC | GGT | AAT | TCA | AGA | AAT | TCA | ACT | CCT | GGC | AGC | AGT | AGG | GGA | AAT | TCT | CCT | GCT | CGA | ATG | GCT | AGC | GGA | GGT | GGT | GAA | ACT | GCC | CTC | GCG | CTA | TTG | CTG | CTA | GAC | AGA | TTG | AAC | CAG | CTT | GAG | AGC | AAA | GTT | TCT | GGT | AAA | GGC | CAA | CAA | CAA | CAA | GGC | CAA | ACT | GTC | ACT | AAG | AAA | TCT | GCT | GCT | GAG | GCA | TCC | AAA | AAG | CCT | CGC | CAA | AAA | CGT | ACT | GCT | ACA | AAA | CAG | TAC | AAC | GTC | ACT | CAA | GCA | TTT | GGG | AGA | CGT | GGT | CCA | GAA | CAA | ACC | CAA | GGA | AAC | TTC | GGG | GAC | CAA | GAC | CTA | ATC | AGA | CAA | GGA | ACT | GAT | TAC | AAA | TAT | TGG | CCG | CAA | ATT | GCA | CAA | TTT | GCT | CCG | AGT | GCC | TCT | GCA | TTC | TTC | GGA | ATG | TCA | CGC | ATT | GGC | ATG | GAA | GTC | ACA | CCT | TCG | GGA | ACA | TGG | CTG | ACT | TAT | CAT | GGA | GCC | ATT | AAA | TTG | GAT | GAC | AAA | GAT | CCA | CAA | TTC | AAA | GAC | AAC | GTC | ATA | CTG | CTG | AAC | AAG | CAC | ATT | GAC | GCA | TAC | AAA | ACA | TTC | CCA | CCA | ACA | GAG | CCT | AAA | AAG | GAC | AAA | AAG | AAA | AAG | ACT | GAT | GAA | GCT | CAG | CCT | TTA | CCG | CAG | AGA | CAA | AAG | AAG | CAG | CCC | ACT | GTG | ACT | CTT | CTT | CCT | GCG | GCT | GAC | ATG | GAT | GAT | TTC | TCC | AGA | CAA | CTT | CAA | AAT | TCC | ATG | AGT | GGAGCTTCT | GCT | GAT | TCA | ACT | CAG | GCA | TAA |
KY417142_Bat_SARS_like_CoV_As6526 | ATG | TCT | GAT | AAT | GGA | CCC | CAATCA | AAC | CAG | CGT | AGT | GCC | CCC | CGC | ATT | ACA | TTT | GGT | GGA | CCC | ACA | GAT | TCA | ACT | GAC | AAT | AAC | CAG | AAT | GGA | GGA | CGC | AAT | GGG | GCA | AGG | CCG | AAA | CAG | CGC | CGA | CCC | CAG | GGT | TTA | CCC | AAT | AAT | ACT | GCG | TCT | TGG | TTC | ACA | GCT | CTC | ACT | CAG | CAT | GGC | AAG | GAG | GAA | CTT | AGA | TTC | CCT | CGA | GGC | CAG | GGC | GTT | CCA | ATC | AAC | ACC | AAT | AGT | GGT | CCA | GAT | GAC | CAA | ATT | GGC | TAC | TAC | CGA | AGA | GCT | ACC | CGA | CGA | GTT | CGT | GGT | GGT | GAC | GGC | AAA | ATG | AAA | GAG | CTC | AGC | CCC | AGA | TGG | TAC | TTC | TAT | TAC | CTA | GGA | ACT | GGC | CCA | GAA | GCT | TCA | CTT | CCC | TAC | GGC | GCT | AAC | AAA | GAA | GGC | ATC | GTA | TGG | GTC | GCA | ACT | GAG | GGA | GCC | TTG | AAC | ACA | CCC | AAA | GAC | CAC | ATT | GGC | ACC | CGC | AAT | CCT | AAT | AAC | AAT | GTT | GCC | ACC | GTG | CTA | CAA | CTT | CCT | CAA | GGA | ACA | ACA | TTG | CCA | AAA | GGC | TTC | TAC | GCA | GAG | GGG | AGC | AGA | GGC | GGC | AGT | CAA | GCC | TCT | TCT | CGC | TCT | TCA | TCA | CGT | AGT | CGC | GGT | AAT | TCA | AGA | AAT | TCA | ACT | CCT | GGC | AGC | AGT | AGG | GGA | AAC | TCT | CCT | GCT | CGA | ATG | GCT | AGC | GGA | GGT | GGT | GAA | ACT | GCC | CTC | GCG | CTA | TTG | CTG | CTA | GAC | AGA | TTG | AAC | CAG | CTT | GAG | AGC | AAA | GTT | TCT | GGT | AAA | GGC | CAA | CAA | CAA | CAA | GGC | CAA | ACT | GTC | ACT | AAG | AAA | TCT | GCT | GCT | GAG | GCA | TCT | AAA | AAG | CCT | CGC | CAA | AAA | CGT | ACT | GCT | ACA | AAA | CAG | TAC | AAC | GTC | ACT | CAA | GCA | TTT | GGG | AGG | CGT | GGT | CCA | GAA | CAA | ACC | CAA | GGA | AAC | TTC | GGG | GAC | CAA | GAC | CTA | ATC | AGA | CAA | GGA | ACT | GAT | TAC | AAA | CAT | TGG | CCG | CAA | ATT | GCA | CAA | TTT | GCT | CCG | AGT | GCC | TCT | GCA | TTC | TTC | GGA | ATG | TCA | CGC | ATT | GGC | ATG | GAA | GTC | ACA | CCT | TCG | GGA | ACA | TGG | CTG | ACT | TAT | CAT | GGA | GCC | ATT | AAA | TTG | GAT | GAC | AAA | GAT | CCA | CAA | TTC | AAA | GAC | AAC | GTC | ATA | CTG | CTG | AAC | AAG | CAC | ATT | GAC | GCA | TAC | AAA | ACA | TTC | CCA | CCA | ACA | GAG | CCT | AAA | AAG | GAC | AAA | AAG | AAA | AAG | ACT | GAT | GAA | GCT | CAG | CCT | TTA | CCG | CAG | AGA | CAA | AAG | AAG | CAG | CCC | ATT | GTG | ACA | CTT | CTT | CCT | GCG | GCT | GAC | ATG | GAT | GAT | TTC | TCC | AGA | CAA | CTT | CAA | AAT | TCC | ATG | AGT | GGAGCTTCT | GCT | GAT | TCA | ACT | CAG | GCA | TAA |
KY417147_Bat_SARS_like_CoV_Rs4237 | ATG | TCT | GAT | AAT | GGA | CCC | CAATCA | AAC | CAG | CGT | AGT | GCC | CCC | CGC | ATT | ACA | TTT | GGT | GGA | CCC | ACA | GAT | TCA | ACT | GAC | AAT | AAC | CAG | AAT | GGA | GGA | CGC | AAT | GGG | GCA | AGG | CCA | AAA | CAA | CGC | CGA | CCC | CAA | GGT | TTA | CCC | AAT | AAT | ACT | GCG | TCT | TGG | TTC | ACA | GCT | CTC | ACT | CAG | CAT | GGC | AAG | GAG | GAA | CTT | AGA | TTC | CCT | CGA | GGC | CAG | GGC | GTT | CCA | ATC | AAC | ACC | AAT | AGT | GGT | CCA | GAT | GAC | CAA | ATT | GGC | TAC | TAC | CGA | AGA | GCT | ACC | CGA | CGA | GTT | CGT | GGT | GGT | GAC | GGC | AAA | ATG | AAA | GAG | CTC | AGC | CCC | AGA | TGG | TAC | TTC | TAT | TAC | CTA | GGA | ACT | GGC | CCA | GAA | GCT | TCA | CTT | CCC | TAC | GGC | GCT | AAC | AAA | GAA | GGC | ATC | GTA | TGG | GTC | GCA | ACT | GAG | GGA | GCC | TTG | AAC | ACA | CCT | AAA | GAC | CAC | ATT | GGC | ACC | CGC | AAT | CCT | AAT | AAC | AAT | GCT | GCC | ACC | GTG | CTA | CAA | CTT | CCT | CAA | GGA | ACA | ACA | TTG | CCA | AAA | GGC | TTC | TAC | GCA | GAG | GGG | AGC | AGA | GGC | GGC | AGT | CAA | GCC | TCT | TCT | CGC | TCC | TCA | TCA | CGT | AGT | CGC | GGT | AAT | TCA | AGA | AAT | TCA | ACT | CCT | GGC | AGC | AGT | AGG | GGA | AAT | TCT | CCT | GCT | CGA | ATG | GCT | AGC | GGA | GGT | GGT | GAA | ACT | GCC | CTC | GCG | CTA | TTG | CTG | CTA | GAC | AGA | TTG | AAC | CAG | CTT | GAG | AGC | AAA | GTT | TCT | GGT | AAA | GGC | CAA | CAA | CAA | CAA | GGC | CAA | ACT | GTC | ACT | AAG | AAA | TCT | GCT | GCT | GAG | GCA | TCT | AAA | AAG | CCT | CGT | CAA | AAA | CGT | ACT | GCC | ACC | AAG | GCG | TAC | AAC | GTC | ACT | CAA | GCA | TTT | GGG | AGG | CGT | GGT | CCA | GAA | CAA | ACC | CAA | GGA | AAC | TTC | GGG | GAC | CAA | GAC | CTA | ATC | AGA | CAA | GGA | ACT | GAT | TAC | AAA | CAT | TGG | CCG | CAA | ATT | GCA | CAA | TTT | GCT | CCA | AGT | GCC | TCT | GCA | TTC | TTC | GGA | ATG | TCA | CGC | ATT | GGC | ATG | GAA | GTC | ACA | CCT | TCG | GGA | ACA | TGG | CTG | ACT | TAT | CAT | GGA | GCC | ATT | AAA | TTG | GAT | GAC | AAA | GAT | CCA | CAA | TTT | AAA | GAC | AAT | GTC | ATA | CTG | CTG | AAC | AAG | CAC | ATT | GAC | GCA | TAC | AAA | ACA | TTC | CCA | CCA | ACA | GAG | CCT | AAA | AAG | GAC | AAA | AAG | AAA | AAG | ACT | GAT | GAA | GCT | CAG | CCT | TTA | CCG | CAG | AGA | CAA | AAG | AAG | CAG | CCC | ACT | GTG | ACT | CTT | CTT | CCT | GCG | GCT | GAC | ATG | GAT | GAT | TTC | TCC | AGA | CAA | CTT | CAA | AAT | TCC | ATG | AGT | GGAGCTTCT | GCT | GAT | TCA | ACT | CAG | GCA | TAA |
KY417148_Bat_SARS_like_CoV_Rs4247 | ATG | TCT | GAT | AAT | GGA | CCC | CAACCA | AAT | CAG | CGT | AGT | GCC | CCC | CGC | ATT | ACA | TTT | GGT | GGA | CCC | ACA | GAT | TCA | ACT | GAC | AAT | AAC | CAG | AAT | GGA | GGA | CGC | AAT | GGG | GCA | AGG | CCA | AAA | CAG | CGC | CGA | CCC | CAA | GGT | TTA | CCC | AAT | AAT | ACT | GCG | TCT | TGG | TTC | ACA | GCT | CTC | ACT | CAG | CAT | GGC | AAG | GAG | GAA | CTT | AGA | TTC | CCT | CGA | GGC | CAG | GGC | GTT | CCA | ATC | AAC | ACC | AAT | AGT | GGT | CCA | GAT | GAC | CAA | ATT | GGC | TAC | TAC | CGA | AGA | GCT | ACC | CGA | CGA | GTT | CGT | GGT | GGT | GAC | GGC | AAA | ATG | AAA | GAG | CTC | AGC | CCC | AGA | TGG | TAC | TTC | TAT | TAC | CTA | GGA | ACT | GGC | CCA | GAA | GCT | TCA | CTT | CCC | TAC | GGC | GCT | AAC | AAA | GAA | GGC | ATC | GTA | TGG | GTC | GCA | ACT | GAG | GGA | GCC | TTG | AAT | ACA | CCG | AAA | GAT | CAC | ATC | GGC | ACC | CGC | AAT | CCT | AAT | AAC | AAT | GCT | GCC | ACC | GTG | CTA | CAA | CTT | CCT | CAA | GGA | ACA | ACA | TTG | CCA | AAA | GGC | TTC | TAC | GCA | GAG | GGG | AGC | AGA | GGC | GGC | AGT | CAA | GCC | TCT | TCT | CGC | TCT | TCG | TCA | CGT | AGT | CGC | GGT | AAT | TCA | AGA | AAT | TCA | ACT | CCT | GGC | AGC | AGT | AGG | GGA | AAT | TCT | CCT | GCT | CGA | ATG | GCT | AGC | GGA | GGT | GGT | GAA | ACT | GCC | CTC | GCG | CTA | TTG | CTG | CTA | GAC | AGA | TTG | AAC | CAG | CTT | GAG | AGC | AAA | GTT | TCT | GGT | AAA | GGC | CAA | CAA | CAA | CAA | GGC | CAA | ACT | GTC | ACT | AAG | AAA | TCT | GCT | GCT | GAG | GCA | TCT | AAA | AAG | CCT | CGC | CAA | AAA | CGT | ACT | GCT | ACA | AAA | CAG | TAC | AAC | GTC | ACT | CAA | GCA | TTT | GGG | AGA | CGT | GGT | CCA | GAA | CAA | ACC | CAA | GGA | AAC | TTC | GGG | GAC | CAA | GAC | CTA | ATC | AGA | CAA | GGA | ACT | GAT | TAT | AAA | CAT | TGG | CCG | CAA | ATT | GCA | CAA | TTT | GCT | CCA | AGT | GCC | TCT | GCA | TTC | TTC | GGA | ATG | TCA | CGC | ATT | GGC | ATG | GAA | GTC | ACA | CCT | TCG | GGA | ACA | TGG | CTG | ACT | TAT | CAT | GGA | GCC | ATT | AAA | TTG | GAT | GAC | AAA | GAT | CCA | CAA | TTC | AAA | GAC | AAC | GTC | ATA | CTG | CTG | AAT | AAG | CAC | ATT | GAC | GCA | TAC | AAA | ACA | TTC | CCA | CCA | ACA | GAG | CCT | AAA | AAG | GAC | AAA | AAG | AAA | AAG | ACT | GAT | GAA | GCT | CAG | CCT | TTA | CCG | CAG | AGA | CAA | AAG | AAG | CAG | CCC | ACT | GTG | ACT | CTT | CTT | CCT | GCG | GCT | GAC | ATG | GAT | GAT | TTC | TCT | AGA | CAA | CTT | CAA | AAT | TCC | ATG | AGT | GGAGCTTCT | GCT | GAT | TCA | ACT | CAG | GCA | TAA |
MK211375_CoV_BtRs_BetaCoV_YN2018A | ATG | TCT | GAT | AAT | GGA | CCC | CAATCA | AAC | CAG | CGT | AGT | GCC | CCC | CGC | ATT | ACA | TTT | GGT | GGA | CCC | ACA | GAT | TCA | ACT | GAC | AAT | AAC | CAG | GAT | GGA | GGA | CGC | AGT | GGT | GCA | CGG | CCA | AAG | CAA | CGC | CGA | CCC | CAA | GGT | TTA | CCC | AAT | AAT | ACT | GCG | TCT | TGG | TTC | ACA | GCT | CTC | ACT | CAG | CAT | GGC | AAG | GAG | GAA | CTT | AGA | TTC | CCT | CGA | GGC | CAG | GGC | GTT | CCA | ATT | AAC | ACC | AAT | AGT | GGT | AAA | GAT | GAC | CAA | ATT | GGC | TAC | TAC | CGA | AGA | GCT | ACC | CGA | CGA | GTT | CGT | GGT | GGT | GAC | GGC | AAA | ATG | AAA | GAG | CTC | AGC | CCC | AGA | TGG | TAC | TTC | TAT | TAC | CTA | GGA | ACT | GGC | CCA | GAA | GCT | TCA | CTT | CCC | TAC | GGC | GCT | AAC | AAA | GAA | GGC | ATC | GTA | TGG | GTC | GCA | ACT | GAG | GGA | GCC | TTG | AAT | ACA | CCT | AAA | GAT | CAT | ATT | GGC | ACC | CGC | AAT | CCT | AAT | AAC | AAT | GCT | GCC | ATC | GTG | CTA | CAA | CTT | CCT | CAA | GGA | ACA | ACA | TTG | CCA | AAA | GGC | TTC | TAC | GCA | GAG | GGG | AGC | AGA | GGC | GGC | AGT | CAA | GCC | TCT | TCT | CGC | TCT | TCA | TCA | CGT | AGT | CGC | GGT | AAT | TCA | AGA | AAT | TCA | ACT | CCT | GGC | AGC | AGT | AGG | GGA | AAT | TCT | CCT | GCT | CGA | ACG | GCT | AGC | GGA | GGT | GGT | GAA | ACT | GCC | CTC | GCG | CTA | TTG | CTG | CTA | GAC | AGA | TTG | AAC | CAG | CTT | GAG | AGC | AAA | GTT | TCT | GGT | AAA | GGC | CAA | CAA | CAA | CAA | GGC | CAA | ACT | GTC | ACT | AAG | AAA | TCT | GCT | GCT | GAG | GCA | TCC | AAA | AAG | CCT | CGC | CAA | AAA | CGT | ACT | GCT | ACA | AAA | CAG | TAC | AAC | GTC | ACT | CAA | GCT | TTT | GGG | AGA | CGT | GGT | CCA | GAA | CAA | ACC | CAG | GGA | AAC | TTC | GGG | GAC | CAA | GAC | CTA | ATC | AGA | CAA | GGA | ACT | GAT | TAC | AAA | CAT | TGG | CCG | CAA | ATT | GCA | CAA | TTT | GCT | CCA | AGT | GCC | TCT | GCA | TTC | TTC | GGA | ATG | TCA | CGC | ATT | GGC | ATG | GAA | GTC | ACA | CCT | TCG | GGA | ACA | TGG | CTG | ACT | TAT | CAT | GGA | GCC | ATT | AAA | TTG | GAT | GAC | AAA | GAT | CCA | CAA | TTC | AAA | GAC | AAC | GTC | ATA | CTG | CTG | AAC | AAG | CAC | ATT | GAC | GCA | TAC | AAA | ACA | TTC | CCA | CCA | ACA | GAG | CCT | AAA | AAG | GAC | AAA | AAG | AAA | AAG | ACT | GAT | GAA | GCT | CAG | CCT | TTA | CCG | CAG | AGA | CAA | AAG | AAG | CAG | CCC | ACT | GTG | ACT | CTT | CTT | CCT | GCG | GCT | GAC | ATG | GAT | GAT | TTC | TCC | AGA | CAA | CTT | CAA | AAT | TCC | ATG | AGT | GGAGCTTCT | GCT | GAT | TCA | ACT | CAG | GCA | TAA |
DQ071615_Bat_SARS_CoV_Rp3 | ATG | TCT | GAT | AAT | GGA | CCC | CA---A | AAC | CAG | CGT | AGT | GCT | CCC | CGC | ATT | ACA | TTT | GGT | GGA | CCC | ACA | GAT | TCA | ACT | GAC | AAC | AAC | CAG | GAT | GGA | GGA | CGC | AGT | GGT | GCA | CGG | CCA | AAA | CAA | CGC | CGA | CCT | CAA | GGT | TTA | CCC | AAT | AAT | ACT | GCG | TCT | TGG | TTC | ACA | GCT | CTC | ACT | CAG | CAT | GGT | AAG | GAG | GAA | CTT | AGA | TTC | CCT | CGA | GGT | CAG | GGT | GTT | CCA | ATC | AAC | ACC | AAT | AGT | GGT | AAA | GAT | GAC | CAA | ATT | GGC | TAC | TAC | CGA | AGA | GCT | ACC | CGA | CGA | GTT | CGT | GGT | GGT | GAC | GGC | AAA | ATG | AAA | GAG | CTC | AGC | CCC | AGA | TGG | TAC | TTC | TAT | TAC | CTA | GGA | ACT | GGC | CCA | GAA | GCT | TCA | CTT | CCC | TAC | GGT | GCT | AAC | AAA | GAA | GGC | ATC | GTA | TGG | GTT | GCA | ACT | GAG | GGA | GCC | CTG | AAT | ACA | CCA | AAA | GAT | CAC | ATT | GGC | ACC | CGC | AAT | CCT | AAT | AAC | AAT | GCT | GCC | ATC | GTG | CTA | CAA | CTT | CCT | CAA | GGA | ACA | ACA | TTG | CCA | AAA | GGC | TTC | TAC | GCA | GAA | GGG | AGC | AGA | GGC | GGC | AGT | CAA | GCC | TCT | TCT | CGC | TCT | TCA | TCA | CGT | AGT | CGC | GGT | AAT | TCA | AGA | AAT | TCA | ACT | CCT | GGC | AGC | AGT | AGG | GGA | AAT | TCT | CCA | GCT | CGA | ATG | GCT | AGC | GGA | GGC | GGT | GAA | ACT | GCC | CTC | GCG | CTA | TTG | CTG | CTA | GAC | AGA | TTG | AAC | CAA | CTT | GAG | AGC | AAA | GTT | TCT | GGT | AGA | AGC | CAA | CAA | CAA | CAA | GGC | CAA | ACT | GTC | ACT | AAG | AAA | TCT | GCT | GCT | GAG | GCA | TCC | AAA | AAG | CCT | CGT | CAA | AAA | CGT | ACT | GCT | ACA | AAA | CAG | TAC | AAC | GTC | ACT | CAA | GCA | TTT | GGG | AGA | CGT | GGT | CCA | GAA | CAA | ACC | CAA | GGA | AAC | TTT | GGG | GAC | CAA | GAA | TTA | ATC | AGA | CAA | GGA | ACT | GAT | TAC | AAA | CAT | TGG | CCG | CAA | ATT | GCA | CAA | TTT | GCT | CCA | AGT | GCC | TCT | GCA | TTC | TTC | GGA | ATG | TCA | CGC | ATT | GGC | ATG | GAA | GTC | ACA | CCT | TCG | GGA | ACA | TGG | CTG | ACT | TAT | CAT | GGA | GCC | ATT | AAA | TTG | GAT | GAT | AAA | GAT | CCA | CAA | TTC | AAA | GAC | AAC | GTC | ATA | CTG | CTG | AAC | AAG | CAC | ATT | GAC | GCA | TAC | AAA | ATA | TTC | CCA | CCA | ACA | GAG | CCT | AAA | AAG | GAC | AAA | AAG | AAA | AAG | ACT | GAT | GAA | GCT | CAG | CCT | TTA | CCG | CAG | AGA | CAA | AAG | AAG | CAG | CCC | ACA | GTG | ACT | CTT | CTT | CCT | GCA | GCT | GAT | ATG | GAT | GAT | TTC | TCC | AGA | CAA | CTT | CAA | AAT | TCC | ATG | AGT | GGAGCTTCT | GCT | GAT | TCA | ACT | CAG | GCA | TAA |
KP886808_Bat_SARS_like_CoV_YNLF_31C | ATG | TCT | GAT | AAT | GGA | CCC | CA---C | AAC | CAA | CGT | AGT | GCT | TCC | CGC | ATT | ACA | TTT | GGT | GGA | CCC | ACA | GAT | TCA | ACT | GAC | AAT | AAC | CAG | AAT | GGA | GGA | CGC | AAT | GGG | GCT | AGG | CCA | AAA | CAG | CGC | CGA | CCC | CAA | GGT | TTA | CCC | AAT | AAT | ACT | GCG | TCT | TGG | TTC | ACA | GCT | CTC | ACT | CAG | CAT | GGC | AAG | GAG | GAG | CTT | AGA | TTC | CCT | CAA | GGC | CAG | GGT | GTT | CCA | ATC | AAC | ACC | AAT | AGT | GGT | CCA | GAT | GAC | CAA | ATT | GGC | TAC | TAC | CGA | AGA | GCT | ACC | CGA | CGA | GTT | CGT | GGT | GGT | GAC | GGC | AAA | ATG | AAA | GAG | CTC | AGC | CCC | AGA | TGG | TAC | TTC | TAT | TAC | CTA | GGA | ACT | GGC | CCA | GAA | GCT | TCA | CTT | CCC | TAT | GGT | GCT | AAC | AAA | GAA | GGC | ATC | ATA | TGG | GTC | GCA | ACT | GAG | GGA | GCC | TTG | AAC | ACA | CCT | AAA | GAC | CAC | ATT | GGC | ACC | CGC | AAC | CCT | AAT | AAC | AAT | GCT | GCT | ACC | GTG | CTA | CAA | CTT | CCT | CAA | GGA | ACA | ACA | TTG | CCC | AAA | GGC | TTC | TAC | GCA | GAA | GGG | AGC | AGA | GGC | GGC | AGT | CAA | GCC | TCT | TCT | CGC | TCT | TCA | TCA | CGT | AGT | CGT | GGT | AAT | TCA | AGA | AAT | TCA | ACT | CCT | GGC | AGC | AGT | AGG | GGA | ACT | TCT | CCT | GCT | CGA | ATT | GCT | AGT | GGA | GGT | GGT | GAA | ACT | GCC | CTC | GCG | CTA | TTG | CTG | CTA | GAC | AGA | TTG | AAC | CAG | CTT | GAG | AGC | AAA | GTT | TCT | GGT | AAA | GGC | CAA | CAA | CAA | CAA | GGC | CAA | ACT | GTC | ACT | AAG | AAA | TCT | GCT | GCT | GAG | GCA | TCC | AAA | AAG | CCT | CGC | CAA | AAA | CGT | ACT | GCT | ACA | AAA | CAG | TAC | AAT | GTC | ACT | CAA | GCT | TTT | GGG | AGA | CGT | GGT | CCA | GAC | CAA | ACC | CAA | GGA | AAC | TTC | GGG | GAC | CAA | GAC | CTA | ATC | AGA | CAA | GGA | ACT | GAT | TAT | AAA | CAT | TGG | CCG | CAA | ATT | GCA | CAA | TTT | GCT | CCA | AGT | GCC | TCT | GCA | TTC | TTC | GGA | ATG | TCA | CGC | ATT | GGC | ATG | GAA | GTC | ACA | CCT | TCG | GGA | ACA | TGG | CTG | ACT | TAT | CAT | GGA | GCC | ATT | AAA | TTG | GAT | GAC | AAA | GAT | CCA | CAA | TTC | AAA | GAC | AAC | GTC | ATA | CTG | CTG | AAC | AAG | CAC | ATT | GAC | GCA | TAC | AAA | ACA | TTC | CCA | CCA | ACA | GAG | CCT | AAA | AAG | GAC | AAA | AAG | AAA | AAG | ACT | GAT | GAA | GCT | CAG | CCT | TTA | CCG | CAG | AGA | CAA | AAG | AAG | CAG | CCC | ACC | GTG | ACT | CTT | CTT | CCT | GCG | GCT | GAT | ATG | GAT | GAT | TTC | TCC | AGA | CAA | CTT | CAA | AAT | TCC | ATG | AGT | GGAGCTTCT | GCT | GAT | TCA | ACT | CAG | GCA | TAA |
KJ473815_BtRs_BetaCoV_GX2013 | ATG | TCT | GAT | AAT | GGA | CCC | CAATCA | AAC | CAG | CGT | AGT | GCC | CCC | AGC | ATT | ACA | TTT | GGT | GGA | CCC | ACA | GAT | TCA | ACT | GAC | AAT | AAC | CAG | GAT | GGA | GGA | CGC | AGT | GGT | GCA | CGG | CCA | AAA | CAG | CGC | CGA | CCC | CAA | GGT | TTA | CCC | AAT | AAT | ACT | GCG | TCT | TGG | TTC | ACA | GCT | CTC | ACT | CAG | CAT | GGC | AAG | GAG | GAA | CTT | AGA | TTC | CCT | CGA | GGC | CAG | GGC | GTT | CCA | ATC | AAC | ACC | AAT | AGT | GGT | AAA | GAT | GAC | CAA | ATT | GGC | TAC | TAC | CGA | AGA | GCT | ACC | CGA | CGA | GTT | CGT | GGT | GGT | GAC | GGC | AAA | ATG | AAA | GAG | CTC | AGC | CCC | AGA | TGG | TAC | TTC | TAC | TAC | CTA | GGA | ACT | GGC | CCA | GAA | GCT | TCA | CTT | CCC | TAC | GGC | GCT | AAT | AAA | GAA | GGC | ATC | GTA | TGG | GTC | GCA | ATT | GAG | GGA | GCC | TTG | AAT | ACA | CCT | AAA | GAT | CAC | ATT | GGC | ACC | CGC | AAT | CCT | AAT | AAC | AAT | GCT | GCC | ATC | GTG | CTA | CAA | CTT | CCT | CAA | GGA | ACA | ACA | TTG | CCA | AAA | GGC | TTC | TAC | GCA | GAG | GGG | AGC | AGA | GGT | GGC | AGT | CAA | GCC | TCA | TCT | CGC | TCC | TCA | TCA | CGT | AGT | CGC | GGT | AAT | TCA | AGA | AAC | TCA | ACT | CCT | GGC | AGC | AGT | AGG | GGA | AAT | TCT | CCT | GCT | CGA | TTG | GCT | AGC | GGA | GGT | GGT | GAA | ACT | GCC | CTC | GCG | CTA | TTG | TTG | CTA | GAC | AGA | CTG | AAC | CAG | CTT | GAG | AGC | AAA | GTT | TCT | GGT | AAA | GGC | CAA | CAA | CAA | CAA | GGC | CAA | ACT | GTC | ACT | AAG | AAA | TCT | GCT | GCT | GAG | GCA | TCC | AAA | AAG | CCT | CGC | CAA | AAA | CGT | ACT | GCT | ACA | AAA | CAG | TAC | AAC | GTC | ACT | CAG | GCA | TTT | GGG | AGA | CGT | GGT | CCA | GAA | CAA | ACC | CAA | GGG | AAC | TTT | GGG | GAC | CAA | GAC | TTA | ACC | AGA | CAA | GGA | ACT | GAT | TAC | AAA | CAT | TGG | CCG | CAA | ATT | GCA | CAA | TTT | GCT | CCA | AGT | GCC | TCT | GCA | TTC | TTC | GGA | ATG | TCA | CGC | ATT | GGC | ATG | GAA | GTC | ACA | CCT | TCG | GGA | ACA | TGG | CTG | ACT | TAT | CAT | GGA | GCC | ATC | AAA | TTG | GAT | GAC | AAA | GAT | CCA | CAA | TTC | AAA | GAC | AAC | GTC | ATA | CTG | CTG | AAC | AAG | CAC | ATT | GAC | GCA | TAC | AAA | ACA | TTC | CCA | CCA | ACA | GAG | CCT | AAA | AAG | GAC | AAG | AAG | AAA | AAG | ACT | GAT | GAA | GCT | CAG | CCT | TTA | CCG | CAG | AGA | CAA | AAG | AAG | CAG | CCC | ACT | GTG | ACT | CTT | CTT | CCT | GCG | GCT | GAC | ATG | GAT | GAT | TTT | TCC | AGA | CAA | CTT | CAA | AAT | TCC | ATG | AGT | GGAGCTTCT | GCT | GAT | TCA | ACT | CAG | GCA | TAA |
KF569996_Rhinolophus_affinis_CoV_LYRa11 | ATG | TCT | GAT | AAT | GGA | CCC | CAACAA | AAT | CAA | CGT | AGT | GCC | CCC | CGC | ATT | ACA | TTT | GGT | GGA | CCC | ACA | GAT | TCA | GCT | GAC | AAT | AAC | CAG | AAT | GGA | GAA | CGC | AGT | GGG | GCA | AGG | CCA | AAA | CAG | CGC | AGA | CCC | CAA | GGT | TTA | CCC | AAT | AAT | ACT | GCG | TCT | TGG | TTC | ACA | GCT | CTC | ACT | CAG | CAT | GGC | AAG | GAG | GAA | CTT | AGA | TTC | CCT | CGA | GGC | CAG | GGC | GTT | CCA | ATC | AAC | ACC | AAT | AGT | GGT | ACA | GAT | GAC | CAA | ATT | GGC | TAC | TAC | CGA | AGA | GCT | ACC | CGA | CGA | GTT | CGT | GGT | GGT | GAC | GGC | AAA | ATG | AAA | GAG | CTC | AGC | CCC | AGA | TGG | TAC | TTC | TAT | TAC | CTA | GGA | ACT | GGC | CCA | GAA | GCT | TCA | CTT | CCC | TAT | GGC | GCT | AAC | AAA | GAA | GGC | ATC | GTA | TGG | GTC | GCA | ACT | GAG | GGA | GCC | TTG | AAT | ACA | CCA | AAA | GAC | CAC | ATT | GGC | ACC | CGC | AAT | CCT | AAT | AAC | AAT | GCT | GCC | ATC | GTG | CTA | CAA | CTT | CCT | CAA | GGA | ACA | ACA | TTG | CCA | AAA | GGC | TTC | TAC | GCA | GAA | GGA | AGC | AGA | GGC | GGC | AGC | CAA | GCC | TCT | TCT | CGC | TCC | TCA | TCA | CGT | AGT | CGC | GGT | AAT | TCA | AGA | AAT | TCA | ACA | CCT | GGC | AGC | AGT | AGG | GGA | AAT | TCT | CCT | GCT | CGA | ATG | GCT | AGC | GGA | GGT | GGT | GAA | ACT | GCC | CTC | GCG | CTA | TTG | CTG | CTA | GAC | AGA | TTG | AAC | CAG | CTA | GAG | AGC | AAA | GTT | TCT | GGT | AAA | GGC | CAA | CAA | CAA | CAA | GGC | CAA | ACT | GTC | ACT | AAA | AAA | TCT | GCT | GCT | GAG | GCT | TCT | AAG | AAG | CCC | CGT | CAA | AAA | CGT | ACT | GCC | ACC | AAG | GCG | TAC | AAT | GTC | ACT | CAA | GCA | TTT | GGG | CGA | CGT | GGT | CCA | GAA | CAA | ACC | CAA | GGA | AAC | TTC | GGG | GAC | CAA | GAA | TTA | ATC | AGA | CAA | GGA | ACT | GAT | TAC | AAA | CAT | TGG | CCG | CAA | ATT | GCA | CAA | TTT | GCT | CCA | AGT | GCC | TCT | GCA | TTC | TTC | GGA | ATG | TCA | CGC | ATT | GGC | ATG | GAA | GTC | ACA | CCT | TCG | GGA | ACA | TGG | CTG | ACT | TAT | CAT | GGA | GCC | ATT | AAA | TTG | GAT | GAT | AAA | GAT | CCA | CAA | TTC | AAA | GAT | AAC | GTC | ATA | ATG | CTT | AAT | AAG | CAC | ATT | GAC | GCA | TAC | AAA | ACA | TTC | CCA | CCA | ACA | GAG | CCT | AAA | AAG | GAC | AAA | AAG | AAA | AAG | ACT | GAT | GAA | GCT | CAG | CCT | TTA | CCG | CAG | AGA | CAG | AAG | AAG | CAG | CCC | ACT | GTG | ACT | CTT | CTT | CCT | GCG | GCT | GAC | ATG | GAT | GAT | TTC | TCC | AGA | CAA | CTT | CAA | AAT | TCC | ATG | AGT | GGAGCTTCT | GCT | GAT | TCA | ACT | CAG | GCA | TAA |
JX993988_Bat_CoV_Cp_Yunnan2011 | ATG | TCT | GAT | AAT | GGA | CCC | CAACAA | AAC | CAA | CGT | AGT | GCC | CCC | CGC | ATT | ACA | TTT | GGT | GGA | CCC | ACA | GAT | TCA | GCT | GAC | AAT | AAC | CAG | GAT | GGA | GGA | CGC | AGT | GGT | GCG | CGG | CCA | AAA | CAA | CGC | CGA | CCT | CAA | GGT | TTA | CCC | AAT | AAT | ACT | GCG | TCT | TGG | TTC | ACA | GCT | CTC | ACT | CAG | CAT | GGC | AAG | GAG | GAA | CTT | AGA | TTC | CCT | CGA | GGC | CAG | GGC | GTT | CCA | ATC | AAC | ACC | AAT | AGT | GGT | AAA | GAT | GAC | CAA | ATT | GGC | TAC | TAC | CGA | AGA | GCT | ACC | CGA | CGA | GTT | CGT | GGT | GGT | GAC | GGC | AAA | ATG | AAA | GAG | CTC | AGC | CCC | AGA | TGG | TAC | TTC | TAT | TAC | CTA | GGA | ACT | GGC | CCA | GAA | GCT | TCA | CTT | CCC | TAC | GGC | GCT | AAC | AAA | GAA | GGC | ATC | GTA | TGG | GTT | GCA | ATT | GAG | GGA | GCC | TTG | AAT | ACA | CCA | AAA | GAT | CAC | ATC | GGC | ACC | CGC | AAT | CCT | AAT | AAC | AAT | GCT | GCC | ATC | GTG | CTA | CAA | CTT | CCT | CAA | GGA | ACA | ACA | TTG | CCA | AAA | GGC | TTC | TAC | GCA | GAG | GGA | AGC | AGA | GGC | GGC | AGT | CAA | GCC | TCT | TCT | CGC | TCC | TCA | TCA | CGT | AGT | CGT | GGT | AAT | TCA | AGA | AAT | TCA | ACT | CCT | GGC | AGC | AGT | AGG | GGA | AAT | TCT | CCT | GCT | CGA | ATG | GCT | AGC | GGA | GGT | GGT | GAA | ACT | GCC | CTC | GCG | CTA | TTG | CTG | CTA | GAC | AGA | TTG | AAC | CAG | CTA | GAG | AGC | AAA | GTT | TCT | GGT | AAA | GGC | CAA | CAA | CAA | CAA | GGC | CAG | ACT | GTC | ACT | AAG | AAA | TCT | GCC | GCT | GAG | GCA | TCT | AAA | AAG | CCT | CGC | CAA | AAA | CGT | ACT | GCT | ACT | AAA | CAG | TAC | AAC | GTC | ACC | CAA | GCA | TTT | GGG | AGA | CGT | GGT | CCA | GAA | CAA | ACC | CAA | GGA | AAC | TTT | GGG | GAC | CAA | GAG | TTA | ATC | AGA | CAA | GGA | ACT | GAT | TAC | AAA | CAT | TGG | CCG | CAA | ATT | GCA | CAA | TTT | GCT | CCA | AGT | GCC | TCT | GCA | TTC | TTC | GGA | ATG | TCA | CGC | ATT | GGC | ATG | GAA | GTC | ACA | CCT | TCG | GGA | ACA | TGG | CTG | ACT | TAT | CAT | GGA | GCC | ATA | AAA | CTG | GAT | GAC | AAA | GAT | CCA | CAA | TTT | AAA | GAC | AAC | GTC | ATA | CTG | CTG | AAT | AAG | CAC | ATT | GAC | GCA | TAC | AAA | ACA | TTC | CCA | CCA | ACA | GAG | CCT | AAA | AAG | GAC | AAA | AAG | AAA | AAG | ACT | GAT | GAA | GCT | CAG | CCT | TTA | CCG | CAG | AGA | CAA | AAG | AAG | CAG | CCC | ACT | GTG | ACT | CTT | CTC | CCT | GCG | GCT | GAT | ATG | GAT | GAT | TTC | TCC | AGA | CAA | CTT | CAA | AAT | TCC | ATG | AGT | GGAGCTTCC | GCT | GAT | TCA | ACT | CAG | GCA | TAA |
MK211374_CoV_BtRl_BetaCoV_SC2018 | ATG | TCT | GAT | AAT | GGA | CCC | CA---A | AAC | CAG | CGT | AGT | GCC | CCC | CGC | ATT | ACA | TTT | GGT | GGA | CCC | ACA | GAT | TCA | ACT | GAC | AAT | AAC | CAG | GAT | GGA | GGA | CGC | AGT | GGT | GCA | CGG | CCA | AAG | CAG | CGC | CGA | CCC | CAA | GGT | TTA | CCC | AAT | AAT | ACT | GCG | TCT | TGG | TTC | ACA | GCT | CTC | ACT | CAG | CAT | GGC | AAG | GAG | GAA | CTT | AAA | TTC | CCT | CGA | GGC | CAG | GGC | GTT | CCA | ATC | AAC | ACC | AAT | AGT | GGT | AAA | GAT | GAC | CAA | ATT | GGC | TAC | TAC | CGA | AGA | GCT | ACC | CGA | CGA | GTT | CGT | GGT | GGT | GAT | GGT | AAA | ATG | AAA | GAG | CTC | AGC | CCC | AGA | TGG | TAC | TTC | TAT | TAC | CTA | GGT | ACT | GGC | CCA | GAA | GCT | TCA | CTT | CCC | TAC | GGC | GCT | AAC | AAA | GAA | GGC | ATC | GTA | TGG | GTC | GCA | ACT | GAG | GGA | GCC | TTG | AAT | ACA | CCT | AAA | GAT | CAC | ATT | GGC | ACC | CGC | AAT | CCT | AAT | AAC | AAT | GCT | GCC | ATC | GTG | CTA | CAA | CTT | CCT | CAA | GGA | ACA | ACA | TTG | CCA | AAA | GGC | TTC | TAC | GCA | GAG | GGG | AGC | AGA | GGC | GGC | AGT | CAA | GCC | TCT | TCT | CGC | TCT | TCA | TCA | CGT | AGT | CGC | GGT | AAT | TCA | AGA | AAT | TCA | ACT | CCT | GGC | AGC | AGT | AGG | GGA | AAT | TCT | CCT | GCT | CGA | ATG | GCT | AGC | GGA | GGT | GGT | GAA | ACT | GCC | CTC | GCG | CTA | TTG | CTG | CTA | GAC | AGA | TTG | AAC | CAG | CTT | GAG | AGC | AAA | GTT | TCT | GGT | AAA | GGC | CAA | CAA | CAG | CAA | GGC | CAA | ACT | GTC | ACT | AAG | AAA | TCT | GCT | GCT | GAG | GCA | TCC | AAA | AAG | CCT | CGC | CAA | AAA | CGT | ACT | GCC | ACA | AAA | CAG | TAC | AAC | GTC | ACT | CAA | GCA | TTT | GGG | AGG | CGT | GGT | CCA | GAA | CAA | ACC | CAA | GGA | AAC | TTT | GGT | GAC | CAA | GAA | TTA | ATC | AGA | CAA | GGG | ACT | GAT | TAC | AAA | CAT | TGG | CCA | CAA | ATT | GCA | CAA | TTT | GCT | CCG | AGT | GCC | TCT | GCA | TTT | TTC | GGA | ATG | TCA | CGC | ATT | GGC | ATG | GAA | GTC | ACA | CCT | TCG | GGA | ACA | TGG | CTG | ACT | TAT | CAT | GGA | GCC | ATT | AAA | TTG | GAT | GAT | AAA | GAT | CCA | CAA | TTC | AAA | GAC | AAC | GTC | ATG | CTG | TTG | AAT | AAG | CAC | ATT | GAC | GCA | TAC | AAA | GCA | TTC | CCA | CCA | ACA | GAG | CCT | AAA | AAG | GAC | AAA | AAG | AAA | AAG | ACT | GAT | GAA | GCT | CAG | CCT | TTA | CCG | CAG | AGA | CAA | AAG | AAG | CAG | CCT | ACT | GTG | ACT | CTT | CTT | CCT | GCG | GCT | GAC | ATG | GAT | GAT | TTC | TCC | AGA | CAA | CTT | CAA | AAT | TCC | ATG | AGT | GGAGCTTCT | GCT | GAT | TCA | ACT | CAG | GCA | TAA |
KJ473814_BtRs_BetaCoV_HuB2013 | ATG | TCT | GAT | AAT | GGA | CCC | CA---A | AAC | CAG | CGT | AGT | GCC | CCC | CGC | ATT | ACA | TTT | GGT | GGA | CCC | TCA | GAT | TCA | ACT | GAC | AAT | AAC | CAG | GAT | GGA | GGA | CGC | AGT | GGT | GCA | CGG | CCA | AAA | CAA | CGC | CGT | CCC | CAA | GGT | TTA | CCC | AAT | AAT | ACT | GCG | TCT | TGG | TTC | ACA | GCT | CTC | ACT | CAG | CAT | GGC | AAG | GAG | GAA | CTT | AGA | TTC | CCT | CGA | GGC | CAG | GGC | GTT | CCA | ATC | AAC | ACC | AAT | AGT | GGT | AAA | GAT | GAC | CAA | ATT | GGC | TAC | TAC | CGA | AGA | GCT | ACC | CGA | CGA | GTT | CGT | GGT | GGT | GAC | GGC | AAA | ATG | AAA | GAG | CTC | AGC | CCC | AGA | TGG | TAT | TTC | TAT | TAC | CTA | GGA | ACT | GGC | CCA | GAA | GCT | TCA | CTT | CCC | TAC | GGC | GCT | AAC | AAA | GAA | GGC | ATC | GTT | TGG | GTC | GCA | ACT | GAG | GGA | GCC | TTA | AAC | ACA | CCA | AAA | GAT | CAC | ATT | GGC | ACC | CGC | AAT | CCT | AAT | AAC | AAT | GCT | GCC | ATC | GTG | CTA | CAA | CTT | CCT | CAA | GGA | ACA | ACA | TTG | CCA | AAG | GGC | TTC | TAC | GCA | GAG | GGG | AGC | AGA | GGC | GGC | AGT | CAA | GCC | TCT | TCC | CGC | TCT | TCA | TCA | CGT | AGT | CGC | GGT | AAT | TCA | AGA | AAT | TCA | ACT | CCT | GGC | AGC | AGT | AGG | GGA | AAT | TCT | CCT | GCT | CGA | ATG | GCT | AGC | GGA | GGT | GGT | GAA | ACT | GCC | CTC | GCG | CTA | TTG | CTG | CTA | GAC | AGA | CTG | AAC | CAG | CTT | GAG | AGC | AAA | GTT | TCT | GGT | AAA | GGC | CAA | CAA | CAA | CAA | GGC | CAA | ACT | GTC | ACT | AAG | AAA | TCT | GCT | GCT | GAG | GCA | TCC | AAA | AAG | CCT | CGC | CAA | AAA | CGT | ACG | GCA | ACT | AAG | TCG | TAC | AAC | GTC | ACT | CAA | GCT | TTT | GGG | AGA | CGT | GGT | CCA | GAA | CAA | ACC | CAA | GGA | AAC | TTT | GGG | GAC | CAA | GAA | CTA | ATC | AGA | CAA | GGA | ACT | GAT | TAC | AAA | CAT | TGG | CCG | CAA | ATT | GCA | CAA | TTT | GCT | CCA | AGT | GCC | TCT | GCA | TTC | TTT | GGA | ATG | TCA | CGC | ATT | GGC | ATG | GAA | GTC | ACA | CCT | TCG | GGA | ACA | TGG | CTG | ACT | TAT | CAT | GGA | GCC | ATA | AAA | TTG | GAT | GAC | AAA | GAT | CCA | CAA | TTC | AAA | GAC | AAC | GTC | ATA | TTG | CTG | AAT | AAG | CAC | ATT | GAC | GCA | TAC | AAA | ACA | TTC | CCA | CCA | ACA | GAG | CCT | AAA | AAG | GAC | AAA | AAG | AAA | AAG | ACT | GAT | GAA | GCT | CAG | CCT | TTA | CCG | CAG | AG- | --A | AAG | AAG | CAG | CCC | ACT | GTG | ACT | CTT | CTG | CCT | GCG | GCT | GAT | ATG | GAT | GAT | TTC | TCC | AGA | CAA | CTT | CAA | AAT | TCC | ATG | AGT | GGAGCTTCT | GCT | GAT | TCA | ACT | CAG | GCA | TAA |
DQ412043_Bat_SARS_CoV_Rm1 | ATG | TCT | GAT | AAT | GGA | CCC | CA---A | AAC | CAG | CGT | AGT | GCC | CCC | CGC | ATT | ACA | TTT | GGT | GGA | CCC | TCA | GAT | TCA | ACT | GAC | AAT | AAC | CAG | GAT | GGA | GGA | CGC | AGT | GGT | GCA | CGG | CCA | AAA | CAA | CGC | CGT | CCC | CAA | GGT | TTA | CCC | AAT | AAT | ACT | GCG | TCT | TGG | TTC | ACA | GCT | CTC | ACT | CAG | CAT | GGC | AAG | GAG | GAA | CTT | AGA | TTC | CCT | CGA | GGC | CAG | GGC | GTT | CCA | ATC | AAC | ACC | AAT | AGT | GGT | AAA | GAT | GAC | CAA | ATT | GGC | TAC | TAC | CGA | AGA | GCT | ACC | CGA | CGA | GTT | CGT | GGT | GGT | GAC | GGC | AAA | ATG | AAA | GAG | CTC | AGC | CCC | AGA | TGG | TAT | TTC | TAT | TAC | CTA | GGA | ACT | GGC | CCA | GAA | GCT | TCA | CTT | CCC | TAC | GGC | GCT | AAC | AAA | GAA | GGC | ATC | GTT | TGG | GTC | GCA | ACT | GAG | GGA | GCC | TTA | AAT | ACA | CCA | AAA | GAT | CAC | ATT | GGC | ACC | CGC | AAT | CCT | AAT | AAC | AAT | GCT | GCC | ATC | GTG | CTA | CAA | CTT | CCT | CAA | GGA | ACA | ACA | TTG | CCA | AAA | GGC | TTC | TAC | GCA | GAA | GGG | AGC | AGA | GGC | GGC | AGT | CAA | GCC | TCT | TCT | CGC | TCT | TCA | TCA | CGT | AGT | CGC | GGT | AAT | TCG | AGA | AAT | TCA | ACT | CCT | GGC | AGC | AGT | AGG | GGA | AAT | TCT | CCT | GCT | CGA | ATG | GCT | AGC | GGA | AGT | GGT | GAA | ACT | GCC | CTT | GCG | CTA | TTG | CTG | CTA | GAC | AGA | CTC | AAC | CAG | CTT | GAG | AGC | AAA | GTT | TCT | GGT | AAA | GGC | CAA | CAA | CAA | CAA | GGT | CAA | ACT | GTC | ACT | AAG | AAA | TCT | GCT | GCT | GAG | GCA | TCT | AAA | AAG | CCT | CGC | CAA | AAA | CGT | ACG | GCA | ACC | AAG | TCG | TAC | AAC | GTC | ACT | CAA | GCA | TTT | GGG | AGA | CGC | GGT | CCA | GAA | CAA | ACC | CAA | GGA | AAC | TTT | GGG | GAC | CAA | GAC | CTA | ATC | AGA | CAA | GGA | ACT | GAT | TAC | AAA | TAT | TGG | CCG | CAA | ATT | GCA | CAA | TTT | GCT | CCA | AGT | GCC | TCT | GCA | TTC | TTC | GGA | ATG | TCA | CGC | ATT | GGC | ATG | GAA | GTC | ACA | CCT | TTG | GGA | ACA | TGG | CTG | ACT | TAT | CAT | GGA | GCC | ATA | AAA | TTG | GAT | GAC | AAA | GAT | CCA | CAA | TTC | AAA | GAC | AAC | GTC | ATA | TTG | CTG | AAT | AAG | CAC | ATT | GAC | GCA | TAC | AAA | ACA | TTC | CCA | CCA | ACA | GAG | CCT | AAA | AAG | GAC | AAA | AAG | AAA | AAG | ACT | GAT | GAA | GCT | CAG | CCT | TTA | CCG | CAG | AG- | --A | AAG | AAG | CAG | CCC | ACT | GTG | ACT | CTT | CTG | CCT | GCG | GCT | GAT | ATG | GAT | GAT | TTC | TCC | AGA | CAA | CTT | CAA | AAT | TCC | ATG | AGT | GGAGCTTCT | GCC | GAT | TCA | ACT | CAG | GCA | TAA |
KY938558_Bat_CoV_strain_16BO133 | ATG | TCT | GAT | AAT | GGA | ACC | CA---A | AAC | CAA | CGT | AGT | GCC | TCC | CGC | ATT | ACA | TTT | GGT | GGA | CCT | TCA | GAT | TCA | ACT | GAC | AAT | AAC | CAG | GAT | GGA | GGA | CGC | AGT | GGT | GCA | CGG | CCA | AAA | CAA | CGC | CGA | CCC | CAG | GGT | TTA | CCC | AAT | AAT | ACT | GCA | TCT | TGG | TTC | ACA | GCT | CTC | ACT | CAG | CAT | GGT | AAG | GAA | GGA | CTC | AAA | TTC | CCT | CAA | GGC | CAG | GGA | GTT | CCT | ATC | AAC | ACC | AAT | AGT | GGC | AGA | GAT | GAC | CAA | ATT | GGC | TAC | TAT | AGA | AGA | GCC | ACC | CGA | CGA | GTT | CGT | GGT | GGT | GAC | GGT | AAA | ATG | AAA | GAG | CTC | AGC | CCC | AGA | TGG | TAC | TTC | TAT | TAC | CTA | GGA | ACT | GGC | CCA | GAA | GCT | TCA | CTT | CCC | TAT | GGT | GCC | AAT | AAA | GAA | GGC | ATC | GTA | TGG | GTT | GCA | ATT | GAG | GGT | GCC | TTG | AAC | ACA | CCA | AAA | GAT | CAT | ATT | GGC | ACC | CGC | AAT | CCT | AAT | AAC | AAT | GCT | GCC | ATT | GTT | CTA | CAA | CTT | CCT | CAA | GGA | ACA | ACA | TTG | CCA | AAA | GGC | TTC | TAC | GCT | GAA | GGG | AGC | AGG | AGT | GGT | AGT | CAA | GCC | TCT | TCT | CGC | TCC | TCA | TCA | CGT | AGT | CGT | GGA | AAT | TCA | AGA | ACT | TCA | ACT | CCT | GGC | AGC | AGT | AGG | GGA | AAT | TCT | CCT | GCT | CGA | GTG | GCT | AGC | GGA | GGT | GGT | GAA | ACT | GCC | CTC | GCG | CTA | TTG | CTG | TTA | GAC | AGA | TTG | AAC | CAG | CTG | GAG | AGC | AAA | GTT | TCT | GGT | AAA | GGC | CAA | CAA | CAA | CAA | GGC | CAA | ACT | GTC | ACT | AAG | AAA | TCT | GCT | TCA | GAG | GCA | TCT | AAA | AAG | CCT | CGG | CAA | AAA | CGT | ACC | GCA | ACC | AAA | CAG | TAC | AAT | GTC | ACC | CAA | GCT | TTT | GGG | CGA | CGT | GGT | CCA | GAT | CAA | ACT | CAA | GGA | AAC | TTT | GGA | GAC | CAG | GAG | CTA | ATC | AGA | CAA | GGA | ACT | GAT | TAT | AAA | CAC | TGG | CCG | CAA | ATA | GCA | CAG | TTT | GCT | CCA | AGT | GCC | TCT | GCA | TTC | TTC | GGA | ATG | TCA | CGC | ATT | GGC | ATG | GAA | GTC | ACA | CCT | TCG | GGA | ACA | TGG | CTG | ACT | TAT | CAT | GGA | GCC | ATT | AAA | TTG | GAT | GAT | AAA | GAT | CCC | CAA | TTT | AAA | GAC | AAC | GTC | ATA | CTG | CTG | AAT | AAG | CAC | ATT | GAC | GCA | TAC | AAG | ACA | TTC | CCA | CCA | ACA | GAG | CCT | AAA | AAG | GAC | AAA | AAG | AAA | AAG | ACT | GAT | GAA | GCT | CAG | CCT | TTG | CCG | CAG | AG- | --A | AAG | AAA | CTG | CCC | ACT | GTG | ACT | CTT | CTG | CCT | GCG | GCT | GAT | ATG | GAT | GAT | TTC | TCC | AGA | CAA | CTT | CAA | AAT | TCC | ATG | AGT | GGAGCTTCT | GCT | GAT | TCA | ACT | CAG | GCA | TAA |
DQ412042_Bat_SARS_CoV_Rf1 | ATG | TCT | GAT | AAT | GGA | CCC | CA---A | AAC | CAA | TGT | AGT | GCC | CCC | CGC | ATT | ACA | TTT | GGT | GGA | CCC | TCA | GAT | TCA | ACT | GAC | AAT | AAC | CAG | GAT | GGA | GGA | CGC | AGT | GGT | GCA | CGG | CCA | AAA | CAA | CGC | CGA | CCC | CAG | GGT | TTA | CCC | AAT | AAT | ACT | GCG | TCT | TGG | TTC | ACA | GCT | CTC | ACT | CAG | CAT | GGT | AAG | GAA | GGA | CTC | AAA | TTC | CCT | CAA | GGC | CAG | GGA | GTT | CCT | ATC | AAC | ACC | AAT | AGT | GGC | AGA | GAT | GAC | CAA | ATT | GGC | TAC | TAC | AGA | AGA | GCT | ACC | CGA | CGA | GTT | CGT | GGT | GGT | GAC | GGT | AAA | ATG | AAA | GAG | CTC | AGC | CCC | AGA | TGG | TAC | TTC | TAT | TAC | CTA | GGA | ACT | GGC | CCA | GAA | GCT | TCA | CTT | CCC | TAT | GGT | GCC | AAT | AAA | GAA | GGC | ATC | GTA | TGG | GTT | GCA | ACT | GAG | GGT | GCC | TTG | AAT | ACA | CCA | AAA | GAT | CAT | ATT | GGC | ACC | CGC | AAT | CCT | AAT | AAC | AAT | GCT | GCT | ATT | GTG | CTA | CAA | CTT | CCT | CAA | GGA | ACA | ACA | TTG | CCA | AAA | GGC | TTC | TAC | GCA | GAA | GGG | AGC | AGG | AAT | GGT | AGT | CAA | GCC | TCT | TCT | CGC | TCC | TCA | TCA | CGT | AGT | CGT | GGA | AAT | TCA | AGA | ACT | TCA | ACT | CCT | GGC | AGC | AGT | AGG | GGA | AAT | TCT | CCT | GCT | CGA | GTG | GCT | AGC | GGA | GGT | GGT | GAA | ACT | GCC | CTC | GCG | CTA | TTG | CTG | CTA | GAC | AGA | TTG | AAC | CAG | CTG | GAG | AGC | AAA | GTT | TCT | GGT | AAA | GGC | CAA | CAA | CAA | CAA | GGC | CAA | ACT | GTC | ACT | AAG | AAA | TCT | ACT | TCA | GAG | GCA | TCT | AAA | AAG | CCT | CGA | CAA | AAA | CGT | ACT | GCA | ACC | AAA | CAG | TAC | AAT | GTC | ACC | CAA | GCC | TTT | GGG | CGA | CGT | GGT | CCA | GAT | CAA | ACT | CAA | GGA | AAC | TTT | GGA | GAC | CAG | GAG | TTA | ATC | AGA | CAA | GGA | ACT | GAT | TAT | AAA | CAC | TGG | CCG | CAA | ATA | GCA | CAG | TTT | GCT | CCA | AGT | GCC | TCT | GCA | TTC | TTC | GGA | ATG | TCA | CGC | ATT | AGC | ATG | GAA | GTC | ACA | CCT | TCG | GGA | ACA | TGG | CTG | ATT | TAT | CAT | GGA | GCC | ATT | AAA | TTG | GAT | GAC | AAA | GAT | CCC | CAA | TTC | AAA | GAC | AAC | GTC | ATA | CTG | CTG | AAC | AAG | CAC | ATT | GAC | GCA | TAC | AAA | ACA | TTC | CCA | CCA | ACA | GAG | CCT | AAA | AAG | GAC | AAA | AAG | AAA | AAG | ACT | GAT | GAA | GCT | CAG | CCT | TTA | CCG | CAG | AGA | CAA | AAG | AAA | CAG | CCC | ACT | GTG | ACT | CTT | CTT | CCT | GCG | GCC | GAC | ATG | GAT | GAT | TTC | TCC | AGA | CAA | CTT | CAA | AAT | TCC | ATG | AGT | GGAGCTTCT | GCT | GAT | TCA | ACT | CAG | GCA | TAA |
DQ648856_Bat_CoV_BtCoV_273_2005 | ATG | TCT | GAT | AAT | GGA | CCC | CA---A | AAC | CAA | CGT | AGT | GCC | CCC | CGC | ATT | ACA | TTT | GGT | GGA | CCC | TCA | GAT | TCA | ACT | GAC | AAT | AAC | CAG | GAT | GGA | GGA | CGC | AGT | GGT | GCA | CGG | CCA | AAA | CAA | CGC | CGA | CCC | CAG | GGT | TTA | CCC | AAT | AAT | ACT | GCG | TCT | TGG | TTC | ACA | GCT | CTC | ACT | CAG | CAT | GGT | AAG | GAA | GGA | CTC | AAA | TTC | CCT | CAA | GGC | CAG | GGA | GTT | CCT | ATC | AAC | ACC | AAT | AGT | GGC | AGA | GAT | GAC | CAA | ATT | GGC | TAC | TAC | AGA | AGA | GCT | ACC | CGA | CGA | GTT | CGT | GGT | GGT | GAC | GGT | AAA | ATG | AAA | GAG | CTC | AGC | CCC | AGA | TGG | TAC | TTC | TAT | TAC | CTA | GGA | ACT | GGC | CCA | GAA | GCT | TCA | CTT | CCC | TAT | GGT | GCC | AAT | AAA | GAA | GGC | ATC | GTA | TGG | GTT | GCA | ACT | GAG | GGT | GCC | TTG | AAT | ACA | CCA | AAA | GAT | CAT | ATT | GGC | ACC | CGC | AAT | CCT | AAT | AAC | AAT | GCT | GCT | ATT | GTG | CTA | CAA | CTT | CCT | CAA | GGA | ACA | ACA | TTG | CCA | AAA | GGC | TTC | TAC | GCA | GAA | GGG | AGC | AGG | AAT | GGT | AGT | CAA | GCC | TCT | TCT | CGC | TCC | TCA | TCA | CGT | AGT | CGT | GGA | AAT | TCA | AGA | ACT | TCA | ACT | CCT | GGC | AGC | AGT | AGG | GGA | AAT | TCT | CCT | GCT | CGA | GTG | GCT | AGC | GGA | GGT | GGT | GAA | ACT | GCC | CTC | GCG | CTA | TTG | CTG | TTA | GAC | AGA | TTG | AAC | CAG | CTG | GAG | AGC | AAA | GTT | TCT | GGT | AAA | GGC | CAA | CAA | CAA | CAA | GGC | CAA | ACT | GTC | ACT | AAG | AAA | TCT | GCT | TCA | GAG | GCA | TCT | AAA | AAG | CCT | CGA | CAA | AAA | CGT | ACT | GCA | ACC | AAA | CAG | TAC | AAT | GTC | ACC | CAA | GCT | TTT | GGG | CGA | CGT | GGT | CCA | GAT | CAA | ACT | CAA | GGA | AAC | TTT | GGA | GAC | CAG | GAG | TTA | ATC | AGA | CAA | GGA | ACT | GAT | TAT | AAA | CAC | TGG | CCG | CAA | ATA | GCA | CAG | TTT | GCT | CCA | AGT | GCC | TCT | GCA | TTC | TTC | GGA | ATG | TCA | CGC | ATT | AGC | ATG | GAA | GTC | ACA | CCT | TCG | GGA | ACA | TGG | CTG | ACT | TAT | CAT | GGA | GCC | ATT | AAA | TTG | GAT | GAC | AAA | GAT | CCC | CAA | TTC | AAA | GAC | AAC | GTC | ATA | CTG | CTG | AAC | AAG | CAC | ATT | GAC | GCA | TAC | AAA | ACA | TTC | CCA | CCA | ACA | GAG | CCT | AAA | AAG | GAC | AAA | AAG | AAA | AAG | ACT | GAT | GAA | GCT | CAG | CCT | TTA | CCG | CAG | AGA | CAA | AAG | AAA | CAG | CCC | ACT | GTG | ACT | CTT | CTT | CCT | GCG | GCC | GAC | ATG | GAT | GAT | TTC | TCC | AGA | CAA | CTT | CAA | AAT | TCC | ATG | AGT | GGAGCTTCT | GCT | GAT | TCA | ACT | CAG | GCA | TAA |
KJ473812_BtRf_BetaCoV_HeB2013 | ATG | TCT | GAT | AAT | GGA | CCC | CA---A | AAC | CAA | CGT | AGT | GCC | CCC | CGC | ATT | ACA | TTT | GGT | GGA | CCC | TCA | GAT | TCA | ACT | GAC | AAT | AAC | CAG | GAT | GGA | GGA | CGC | AGT | GGT | GTA | CGG | CCA | AAA | CAA | CGC | CGA | CCC | CAG | GGT | TTA | CCC | AAT | AAT | ACT | GCG | TCT | TGG | TTC | ACA | GCT | CTC | ACT | CAG | CAT | GGT | AAG | GAA | GGA | CTC | AAA | TTC | CCT | CAA | GGC | CAG | GGA | GTT | CCT | ATC | AAC | ACC | AAT | AGT | GGC | AGA | GAC | GAC | CAA | ATT | GGC | TAC | TAC | AGA | AGA | GCT | ACC | CGA | CGA | GTT | CGT | GGT | GGT | GAC | GGT | AAA | ATG | AAA | GAG | CTC | AGC | CCC | AGA | TGG | TAC | TTC | TAT | TAC | CTA | GGA | ACT | GGC | CCA | GAA | GCT | TCA | CTT | CCC | TAT | GGT | GCC | AAT | AAA | GAA | GGC | ATC | GTA | TGG | GTT | GCA | ACT | GAG | GGT | GCC | TTG | AAC | ACA | CCA | AAA | GAT | CAT | ATT | GGC | ACC | CGC | AAT | CCT | AAT | AAC | AAT | GCT | GCT | ATT | GTG | CTA | CAA | CTT | CCT | CAA | GGA | ACA | ACA | TTG | CCA | AAA | GGC | TTC | TAC | GCA | GAA | GGG | AGC | AGG | AAT | GGT | AGT | CAA | GCC | TCT | TCT | CGC | TCC | TCA | TCA | CGT | AGT | CGT | GGA | AAT | TCA | AGA | ACT | TCA | ACT | CCT | GGC | AGC | AGT | AGG | GGA | AAT | TCT | CCT | GCT | CGA | GTG | GCT | AGC | GGA | GGT | GGT | GAA | ACT | GCC | CTC | GCG | CTA | TTG | CTG | TTA | GAC | AGA | TTG | AAC | CAG | CTG | GAG | AGC | AAA | GTT | TCT | GGT | AAA | GGC | CAA | CAA | CAA | CAA | GGC | CAA | ACT | GTC | ACT | AAG | AAA | TCT | GCT | TCA | GAG | GCA | TCT | AAA | AAG | CCT | CGA | CAA | AAA | CGT | ACT | GCA | ACC | AAA | CAG | TAT | AAT | GTC | ACC | CAA | GCT | TTT | GGG | CGA | CGT | GGT | CCA | GAT | CAA | ACT | CAA | GGA | AAC | TTT | GGA | GAC | CAG | GAG | TTA | ATC | AGA | CAA | GGA | ACT | GAT | TAT | AAA | CAC | TGG | CCG | CAA | ATA | GCA | CAG | TTT | GCT | CCA | AGT | GCC | TCT | GCA | TTC | TTC | GGA | ATG | TCA | CGC | ATT | GGC | ATG | GAA | GTC | ACA | CCT | TCG | GGA | ACA | TGG | CTG | ACT | TAC | CAT | GGA | GCC | ATT | AAA | TTG | GAT | GAC | AAA | GAT | CCC | CAA | TTC | AAA | GAC | AAC | GTC | ATA | CTG | TTG | AAT | AAG | CAC | ATT | GAC | GCA | TAC | AAA | ACA | TTC | CCA | CCA | ACA | GAG | CCT | AAA | AAG | GAC | AAA | AAG | AAA | AAG | ACT | GAT | GAA | GCT | CAG | CCT | TTA | CCG | CAG | AGA | CAA | AAG | AAA | CAG | CCC | ACT | GTG | ACT | CTT | CTT | CCT | GCG | GCC | GAC | ATG | GAT | GAT | TTC | TCC | AGA | CAA | CTT | CAA | AAT | TCC | ATG | AGT | GGAGCTTCT | GCT | GAT | TCA | ACT | CAG | GCA | TAA |
KY770860_Bat_CoV_Jiyuan_84 | ATG | TCT | GAT | AAT | GGA | CCC | CA---A | AAC | CAA | CGT | AGT | GCC | CCC | CGC | ATT | ACA | TTT | GGT | GGA | CCC | TCA | GAT | TCA | ACT | GAC | AAT | AAC | CAG | GAT | GGA | GGA | CGC | AGT | GGT | GTA | CGG | CCA | AAA | CAA | CGC | CGA | CCC | CAG | GGT | TTA | CCC | AAT | AAT | ACT | GCG | TCT | TGG | TTC | ACA | GCT | CTC | ACT | CAG | CAT | GGT | AAG | GAA | GGA | CTC | AAA | TTC | CCT | CAA | GGC | CAG | GGA | GTT | CCT | ATC | AAC | ACC | AAT | AGT | GGC | AGA | GAC | GAC | CAA | ATT | GGC | TAC | TAC | AGA | AGA | GCT | ACC | CGA | CGA | GTT | CGT | GGT | GGT | GAC | GGT | AAA | ATG | AAA | GAG | CTC | AGC | CCC | AGA | TGG | TAC | TTT | TAT | TAC | CTA | GGA | ACT | GGC | CCA | GAA | GCT | TCA | CTT | CCC | TAT | GGT | GCC | AAT | AAA | GAA | GGC | ATC | GTA | TGG | GTT | GCA | ACT | GAG | GGT | GCC | TTG | AAC | ACA | CCA | AAA | GAT | CAT | ATT | GGC | ACC | CGC | AAT | CCT | AAT | AAC | AAT | GCT | GCT | ATT | GTG | CTA | CAA | CTT | CCT | CAA | GGA | ACA | ACA | TTG | CCA | AAA | GGC | TTC | TAC | GCA | GAA | GGG | AGC | AGG | AAT | GGT | AGT | CAA | GCC | TCT | TCT | CGC | TCC | TCA | TCA | CGT | AGT | CGT | GGA | AAT | TCA | AGA | ACT | TCA | ACT | CCT | GGC | AGC | AGT | AGG | GGA | AAT | TCT | CCT | GCT | CGA | GTG | GCT | AGC | GGA | GGT | GGT | GAA | ACT | GCC | CTC | GCG | CTA | TTG | CTG | TTA | GAC | AGA | TTG | AAC | CAG | CTG | GAG | AGC | AAA | GTT | TCT | GGT | AAA | GGC | CAA | CAA | CAA | CAA | GGC | CAA | ACT | GTC | ACT | AAG | AAA | TCT | GCT | TCA | GAG | GCA | TCT | AAA | AAG | CCT | CGA | CAA | AAA | CGT | ACT | GCA | ACC | AAA | CAG | TAT | AAT | GTC | ACC | CAA | GCT | TTT | GGG | CGA | CGT | GGT | CCA | GAT | CAA | ACT | CAA | GGA | AAC | TTT | GGA | GAC | CAG | GAG | TTA | ATC | AGA | CAA | GGA | ACT | GAT | TAT | AAA | CAC | TGG | CCG | CAA | ATA | GCA | CAG | TTT | GCT | CCA | AGT | GCC | TCT | GCA | TTC | TTC | GGA | ATG | TCA | CGC | ATT | GGC | ATG | GAA | GTC | ACA | CCT | TCG | GGA | ACA | TGG | CTG | ACT | TAC | CAT | GGA | GCC | ATT | AAA | TTG | GAT | GAC | AAA | GAT | CCC | CAA | TTC | AAA | GAC | AAC | GTC | ATA | CTG | TTG | AAT | AAG | CAC | ATT | GAC | GCA | TAC | AAA | ACA | TTC | CCA | CCA | ACA | GAG | CCT | AAA | AAG | GAC | AAA | AAG | AAA | AAG | ACT | GAT | GAA | GCT | CAG | CCT | TTA | CCG | CAG | AGA | CAA | AAG | AAA | CAG | CCC | ACT | GTG | ACT | CTT | CTT | CCT | GCG | GCC | GAC | ATG | GAT | GAT | TTC | TCC | AGA | CAA | CTT | CAA | AAT | TCC | ATG | AGT | GGAGCTTCT | GCT | GAT | TCA | ACT | CAG | GCA | TAA |
JX993987_Bat_CoV_Rp_Shaanxi2011 | ATG | TCT | GAT | AAT | GGA | CCC | CA---A | AAC | CAA | CGT | AGT | GCC | CCC | CGC | ATT | ACA | TTT | GGT | GGA | CCC | TCA | GAT | TCA | ACT | GAC | AAT | AAC | CAG | GAT | GGA | GGA | CGC | AGT | GGT | GCA | CGG | CCA | AAA | CAA | CGC | CGT | CCC | CAA | GGT | TTA | CCC | AAT | AAT | ACT | GCG | TCT | TGG | TTC | ACA | GCT | CTC | ACT | CAG | CAT | GGC | AAG | GAG | GAA | CTT | AGA | TTC | CCT | CGA | GGC | CAG | GGC | GTT | CCA | ATC | AAC | ACC | AAT | AGT | GGT | AAA | GAT | GAC | CAA | ATT | GGC | TAC | TAC | CGA | AGA | GCT | ACC | CGA | CGA | GTT | CGT | GGT | GGT | GAC | GGC | AAA | ATG | AAA | GAG | CTC | AGC | CCC | AGA | TGG | TAT | TTC | TAT | TAC | CTA | GGA | ACT | GGC | CCA | GAA | GCT | TCA | CTT | CCC | TAT | GGT | GCT | AAC | AAA | GAA | GGC | ATC | ATA | TGG | GTC | GCA | ACT | GAG | GGA | GCC | TTG | AAT | ACA | CCA | AAA | GAT | CAC | ATC | GGC | ACC | CGC | AAT | CCT | AAT | AAC | AAT | GCT | GCC | ATC | GTG | CTA | CAA | CTT | CCT | CAA | GGA | ACA | ACA | TTG | CCA | AAA | GGC | TTC | TAC | GCA | GAA | GGG | AGC | AGA | GGC | GGC | AGT | CAA | GCC | TCT | TCT | CGC | TCC | TCA | TCA | CGT | AGT | CGC | GGT | AAT | TCA | AGA | AAT | TCA | ACT | CCT | GGC | AGC | AGT | AGG | GGA | AAC | TCC | CCT | GCT | CGA | ATG | GCT | AGC | GGA | GGT | GGT | GAA | ACT | GCC | CTC | GCG | CTA | TTG | CTG | CTA | GAT | AGA | CTG | AAC | CAG | CTA | GAG | AGC | AAA | GTT | TCT | GGT | AAA | GGC | CAA | CAA | CAA | CAA | GGC | CAA | ACT | GTC | ACT | AAG | AAA | TCT | GCT | GCT | GAG | GCA | TCC | AAA | AAG | CCT | CGC | CAA | AAG | CGT | ACG | GCA | ACT | AAG | TCG | TAC | AAC | GTC | ACT | CAA | GCA | TTT | GGG | AGA | CGT | GGT | CCA | GAA | CAA | ACC | CAA | GGA | AAC | TTT | GGG | GAC | CAA | GAC | TTA | ATC | AGA | CAA | GGA | ACT | GAT | TAC | AAA | CAC | TGG | CCG | CAA | ATT | GCA | CAA | TTT | GCT | CCA | AGT | GCC | TCT | GCA | TTC | TTT | GGA | ATG | TCA | CGC | ATT | GGC | ATG | GAA | GTC | ACA | CCT | TCG | GGA | ACA | TGG | CTG | ACT | TAT | CAT | GGA | GCC | ATC | AAA | TTG | GAT | GAC | AAA | GAT | CCA | CAA | TTC | AAA | GAC | AAC | GTC | ATA | CTG | CTG | AAT | AAG | CAT | ATT | GAC | GCA | TAC | AAA | ACA | TTC | CCA | CCA | ACA | GAG | CCT | AAA | AAG | GAC | AAA | AAG | AAA | AAG | ACT | GAT | GAA | GCT | CAG | CCT | TTA | CCG | CAG | AG- | --A | AAG | AAG | CAG | CCC | ACT | GTG | ACT | CTT | CTG | CCT | GCG | GCT | GAC | ATG | GAT | GAT | TTC | TCC | AGA | CAA | CTT | CAA | AAT | TCC | ATG | AGT | GGAGCTTCT | GCT | GAT | TCA | ACT | CAG | GCA | TAA |
GQ153542_Bat_SARS_CoV_HKU3_7 | ATG | TCT | GAT | AAT | GGA | CCC | CA---A | GAC | CAA | CGT | AGT | GCT | CCC | CGC | ATT | ACA | TTT | GGT | GGA | CCC | ACA | GAT | TCA | ACT | GAC | AAT | AAC | CAG | GAT | GGA | GGA | CGC | AGT | GGT | GCA | CGG | CCA | AAA | CAA | CGC | CGG | CCC | CAG | GGT | TTA | CCC | AAT | AAT | ACT | GCG | TCT | TGG | TTC | ACA | GCT | CTC | ACT | CAG | CAT | GGC | AAG | GAG | GAA | CTT | AGA | TTT | CCT | CGA | GGC | CAG | GGT | GTT | CCA | ATC | AAC | ACC | AAT | AGT | GGT | AAA | GAT | GAC | CAA | ATT | GGC | TAC | TAC | CGA | AGA | GCT | ACC | CGA | CGA | GTT | CGT | GGT | GGT | GAC | GGC | AAA | ATG | AAA | GAG | CTC | AGC | CCC | AGA | TGG | TAC | TTT | TAC | TAC | CTA | GGA | ACT | GGC | CCA | GAA | GCT | TCA | CTT | CCC | TAT | GGT | GCT | AAC | AAA | GAA | GGC | ATC | GTA | TGG | GTC | GCA | ACT | GAG | GGC | GCC | TTG | AAC | ACA | CCT | AAA | GAT | CAC | ATT | GGC | ACC | CGC | AAT | CCT | AAT | AAC | AAT | GCT | GCC | ATC | GTG | CTA | CAA | CTT | CCT | CAA | GGA | ACA | ACA | TTG | CCA | AAA | GGC | TTC | TAC | GCA | GAG | GGG | AGC | AGA | GGC | GGC | AGT | CAA | GCC | TCA | TCT | CGC | TCT | TCA | TCA | CGT | AGT | CGC | GGT | AAT | TCA | AGA | AAT | TCA | ACT | CCT | GGC | AGC | AGT | AGG | GGA | AAT | TCT | CCT | GCT | CGA | TTG | GCT | AGC | GGA | GGC | GGT | GAA | ACT | GCC | CTT | GCG | CTA | TTG | CTG | CTA | GAC | AGA | TTG | AAC | CAG | CTT | GAG | AGC | AAA | GTT | TCT | GGT | AAA | GGC | CAA | CAA | CAA | CAA | GGC | CAA | ACT | GTC | ACC | AAG | AAA | TCT | GCT | GCT | GAG | GCA | TCT | AAA | AAG | CCT | CGC | CAA | AAA | CGT | ACT | GCT | ACT | AAA | CAG | TAT | AAC | GTC | ACT | CAA | GCA | TTT | GGG | AGA | CGT | GGT | CCA | GAG | CAA | ACC | CAA | GGA | AAC | TTT | GGG | GAC | CAA | GAT | CTA | ATC | AGA | CAA | GGA | ACT | GAT | TAC | AAA | CAT | TGG | CCG | CAA | ATT | GCA | CAA | TTT | GCT | CCA | AGT | GCC | TCT | GCA | TTC | TTC | GGA | ATG | TCA | CGC | ATT | GGC | ATG | GAA | GTC | ACA | CCT | TCG | GGA | ACT | TGG | CTG | ACT | TAT | CAT | GGA | GCC | ATT | AAA | TTG | GAT | GAC | AAA | GAT | CCA | CAA | TTC | AAA | GAT | AAC | GTC | ATA | CTG | CTG | AAC | AAG | CAC | ATT | GAC | GCA | TAT | AAA | ACA | TTC | CCA | CCA | ACA | GAG | CCT | AAA | AAG | GAC | AAA | AAG | AAA | AAG | ACT | GAT | GAA | GCT | CAG | CCT | TTA | CCG | CAG | AGA | CAA | AAG | AAG | CAA | CCT | ACT | GTG | ACT | CTT | CTT | CCT | GCG | GCT | GAC | ATG | GAT | GAT | TTC | TCT | AGA | CAA | CTT | CAA | AAA | TCC | ATG | AGT | GGAGCTTCT | GCT | GAT | TCA | ACT | CAG | GCA | TAA |
DQ022305_Bat_SARS_CoV_HKU3_1 | ATG | TCT | GAT | AAT | GGA | CCC | CA---A | AGT | CAA | CGT | AGT | GCC | CCC | CGC | ATT | ACA | TTT | GGT | GGA | CCC | GCA | GAT | TCA | AAT | GAC | AAT | AAC | CAG | GAT | GGA | GGA | CGC | AGT | GGT | GCA | CGA | CCA | AAA | CAA | CGC | CGG | CCC | CAA | GGT | TTA | CCC | AAT | AAT | ACT | GCG | TCT | TGG | TTC | ACA | GCT | CTC | ACT | CAG | CAT | GGC | AAA | GAG | GAA | CTT | AGA | TTC | CCT | CGA | GGC | CAG | GGC | GTT | CCA | ATC | AAC | ACC | AAT | AGT | GGT | AAA | GAT | GAC | CAA | ATT | GGC | TAC | TAC | CGA | AGA | GCT | ACC | CGA | CGA | GTT | CGT | GGT | GGT | GAC | GGC | AAA | ATG | AAA | GAG | CTC | AGC | CCC | AGA | TGG | TAT | TTC | TAT | TAC | CTA | GGA | ACT | GGC | CCA | GAA | GCT | TCA | CTT | CCC | TAT | GGC | GCT | AAT | AAA | GAA | GGC | ATC | GTA | TGG | GTC | GCA | ACT | GAG | GGA | GCC | TTG | AAT | ACA | CCG | AAA | GAT | CAC | ATT | GGC | ACC | CGC | AAC | CCT | AAT | AAC | AAT | GCT | GCC | ATC | GTG | CTA | CAA | CTT | CCT | CAA | GGA | ACA | ACA | TTG | CCA | AAA | GGC | TTC | TAC | GCA | GAG | GGG | AGC | AGA | GGT | GGC | AGT | CAA | TCT | TCA | TCT | CGC | TCC | TCA | TCA | CGT | AGT | CGC | GGT | AAT | TCA | AGA | AAT | TCA | ACT | CCT | GGC | AGC | AGT | AGG | GGA | AGT | TCT | CCT | GCT | CGA | TTG | GCT | AGC | GGA | GGT | GGT | GAA | ACT | GCC | CTC | GCG | CTA | TTG | CTG | CTA | GAC | AGA | TTG | AAT | CAG | CTT | GAG | AGC | AAA | GTT | TCT | GGT | AAA | GGC | CAA | CAA | CAA | CCA | GGC | CAA | ACC | GTC | ACT | AAG | AAA | TCT | GCT | GCT | GAG | GCA | TCG | AAG | AAG | CCT | CGC | CAA | AAA | CGT | ACT | GCT | ACT | AAA | CAG | TAC | AAC | GTC | ACT | CAA | GCA | TTT | GGG | AGA | CGT | GGT | CCA | GAG | CAA | ACC | CAA | GGA | AAC | TTT | GGG | GAC | CAA | GAA | CTA | ATC | AGA | CAA | GGA | ATT | GAT | TAC | AAA | CAT | TGG | CCG | CAA | ATT | GCA | CAA | TTT | GCT | CCA | AGT | GCC | TCT | GCA | TTC | TTC | GGA | ATG | TCA | CGC | ATT | GGC | ATG | GAA | GTC | ACA | CCT | TCG | GGA | ACA | TGG | CTG | ACT | TAT | CAT | GGA | GCC | ATC | AAA | TTG | GAT | GAC | AAA | GAT | CCA | CAA | TTC | AAA | GAC | AAC | GTC | ATA | CTG | CTG | AAC | AAG | CAC | ATT | GAC | GCA | TAT | AAA | ACA | TTC | CCA | CCA | ACA | GAG | CCT | AAA | AAG | GAC | AAA | AAG | AAA | AAG | ACT | GAT | GAA | GCT | CAG | CCT | TTA | CCG | CAG | AGA | CAA | AAG | AAG | CAG | CCC | ACT | GTG | ACT | CTT | CTT | CCT | GCG | GCT | GAC | ATG | GAT | GAT | TTC | TCC | AGA | CAA | CTT | CAA | CAT | TCC | ATG | AGT | GGAGCTTCT | GCT | GAT | TCT | ACT | CAG | GCA | TAA |
GQ153547_Bat_SARS_CoV_HKU3_12 | ATG | TCT | GAT | AAT | GGA | CCC | CA---A | AGT | CAA | CGT | AGT | GCC | CCC | CGC | ATT | ACA | TTT | GGT | GGA | CCC | GCA | GAT | TCA | AAT | GAC | AAT | AAC | CAG | GAT | GGA | GGA | CGC | AGT | GGT | GCA | CGG | CCA | AAA | CAG | CGC | CGG | CCC | CAA | GCT | TTA | CCC | AAT | AAT | ACT | GCG | TCT | TGG | TTC | ACA | GCT | CTC | ACT | CAG | CAT | GGC | AAA | GAG | GAA | CTT | AGA | TTC | CCT | CGA | GGC | CAG | GGC | GTT | CCA | ATC | AAC | ACC | AAT | AGT | GGT | AAA | GAT | GAC | CAA | ATT | GGC | TAC | TAC | CGA | AGA | GCT | ACC | CGA | CGA | GTT | CGT | GGT | GGT | GAC | GGC | AAA | ATG | AAA | GAG | CTC | AGC | CCC | AGA | TGG | TAT | TTC | TAT | TAC | CTA | GGA | ACT | GGC | CCA | GAA | GCT | TCA | CTT | CCC | TAT | GGC | GCT | AAT | AAA | GAA | GGC | ATC | GTA | TGG | GTC | GCA | ACT | GAG | GGA | GCC | TTG | AAT | ACA | CCG | AAA | GAT | CAC | ATT | GGC | ACC | CGC | AAC | CCT | AAT | AAC | AAT | GCT | GCC | GTC | GTG | CTA | CAA | CTT | CCT | CAA | GGA | ACA | ACA | TTG | CCA | AAA | GGC | TTC | TAC | GCA | GAG | GGG | AGC | AGA | GGT | GGC | AGT | CAA | TCT | TCA | TCT | CGC | TCC | TCA | TCA | CGT | AGT | CGC | GGT | AAT | TCA | ACA | AAT | TCA | ACT | CCT | GGC | AGC | AGT | AGG | GGA | AGT | TCT | CCT | GCT | CGA | TTG | GCT | AGC | GGA | GGT | GGT | GAA | ACT | GCC | CTC | GCG | CTA | TTG | CTG | CTA | GAC | AGA | TTG | AAT | CAG | CTT | GAG | AGC | AAA | GTT | TCT | GGT | AAA | GGC | CAA | CAA | CAA | CCA | GGC | CAA | ACC | GTC | ACT | AAG | AAA | TCT | GCT | GCT | GAG | GCA | TCG | AAG | AAG | CCT | CGC | CAA | AAA | CGT | ACT | GCT | ACT | AAA | CAG | TAC | AAC | GTC | ACT | CAA | GCA | TTT | GGG | AGA | CGT | GGT | CCA | GAG | CAA | ACC | CAA | GGA | AAC | TTT | GGG | GAC | CAA | GAA | CTA | ATC | AGA | CAA | GGA | ACT | GAT | TAC | AAA | CAT | TGG | CCG | CAA | ATT | GCA | CAA | TTT | GCT | CCA | AGT | GCC | TCT | GCA | TTC | TTC | GGA | ATG | TCA | CGC | ATT | GGC | ATG | GAA | GTC | ACA | CCT | TCG | GGA | ACA | TGG | CTG | ACT | TAT | CAT | GGA | GCC | ATC | AAA | TTG | GAT | GAC | AAA | GAT | CCA | CAA | TTC | AAA | GAC | AAC | GTC | ATA | CTG | CTG | AAC | AAG | CAC | ATT | GAC | GCA | TAT | AAA | ACA | TTC | CCA | CCA | ACA | GAG | CCT | AAA | AAG | GAC | AAA | AAG | AAA | AAG | ACT | GAT | GAA | GCT | CAG | CCT | TTA | CCG | CAG | AGA | CAA | AAG | AAG | CAG | CCC | ACT | GTG | ACT | CTT | CTT | CCT | GCG | GCT | GAC | ATG | GAT | GAT | TTC | TCC | AGA | CAA | CTT | CAA | CAT | TCC | ATG | AGT | GGAGCTTCT | GCT | GAT | TCT | ACT | CAG | GCA | TAA |
KY352407_SARS_related_CoV_strain_BtKY72 | ATG | ACT | GAT | AAT | GGA | CAA | CA---A | GGA | CCG | CGC | AAT | GCG | CCT | CGC | ATT | ACG | TTT | GGT | G-- | -TC | TCA | GAT | AAC | TTT | GAC | AAT | AAC | CAG | AAT | GGA | GAC | CGT | ACT | GGA | GCT | AGG | CCT | AAG | CAT | AGA | AGA | CCG | CAA | GGC | CCT | CCT | AAC | AAC | ACG | GCA | TCC | TGG | TTC | ACC | GCT | CTC | ACT | CAA | CAT | GGT | AAA | GAA | ACT | CTC | ACC | TTC | CCG | AGA | GGA | CAA | GGT | GTG | CCG | ATT | AAT | ACC | AAC | AGT | GGC | AAA | GAT | GAC | CAA | ATT | GGC | TAC | TAT | AGA | AGA | GCT | TCC | CGA | CGA | GTT | CGT | GGT | GGT | GAC | GGA | AAA | ATG | AAA | GAG | TTG | AGC | CCA | AGA | TGG | TAC | TTC | TAC | TAC | CTA | GGA | ACA | GGA | CCA | GAG | GCT | GCA | TTA | CCT | TAT | GGT | GCT | AAT | AAA | GAA | GGA | ATA | GTT | TGG | GTA | GCC | ACG | GAA | GGG | GCA | CTA | AAC | ACA | CCT | AAA | GAA | CAC | ATT | GGC | ACG | CGT | AAT | CCC | AAC | AAC | AAC | GCA | GCC | ATT | GTC | TTG | CAA | TTG | CCT | CAA | GGT | ACG | TCC | TTG | CCA | AAA | GGA | TTC | TAC | GCA | GAA | GGA | AGT | CGT | GGT | GGC | AGC | CAA | ACC | GCC | TCA | CGT | TCC | AGC | TCA | CGT | AGT | CGT | GGA | AAT | TCC | AGA | AAT | TCA | ACG | CCT | AGC | AGT | AGC | AGA | GGT | TCA | TCA | CCA | GCA | CGA | AAC | CTG | CAA | GCT | GGA | GGT | GAC | ACA | GCA | CTT | GCC | CTT | TTG | CTG | CTA | GAT | AGG | TTA | AAC | CAG | TTG | GAG | AGC | AAA | GTT | TCA | GGT | AAG | ACA | CAA | CAA | CAA | CAA | CCA | CAA | GTT | GTC | ACA | AGA | AAA | TCA | GCT | TCT | GAA | GCT | TCT | AAG | AAG | CCC | AGA | CAA | AAA | CGA | ACG | GCT | ACC | AAG | CAG | TAC | AAT | GTC | ACG | CAA | GCT | TTT | GGT | AGA | CGA | GGA | CCC | GAA | CAA | ACA | CAA | GGC | AAC | TTT | GGG | GAC | CAG | GAA | TTA | ATC | AGA | TTA | GGT | ACT | GAT | TAC | AAA | AAT | TGG | CCA | CAG | ATA | GCG | CAG | TTT | GCA | CCT | AGT | GCT | TCA | GCT | TTC | TTT | GGC | ATG | TCC | CGT | ATT | GGT | ATG | GAA | GTC | ACA | CCT | ACA | GGG | ACA | TGG | CTC | ACT | TAT | CAT | GGA | GCC | ATA | AAA | TTG | GAT | GAC | AAA | GAT | CCA | AAC | TTC | AAA | GAC | CAG | GTT | ATT | TTG | TTG | AAT | AAG | CAC | ATT | GAT | GCT | TAT | AAA | ACA | TTT | CCA | CCT | ACT | GAA | CCT | AAA | AAG | GAC | AAA | AAG | AAG | AAG | GCT | GAT | GAA | GTA | CAG | CCT | CTG | CCG | CAG | AGA | CAG | AAG | AAA | CAG | CCA | ACT | GTT | ACA | CTG | TTA | CCT | GCA | GCT | GAA | TTG | GAT | GAT | TTT | TCC | AAA | CAA | CTT | CAG | GAT | TCC | ATG | AAT | GGAGCCT-- | -CA | GAC | TCA | ACA | CAG | GCC | TAA |
NC_014470_Bat_CoV_BM48_31_BGR_2008 | ATG | ACT | GAT | AAT | GGA | CAA | TC---A | AAC | TCG | CGT | AAT | GCG | CCT | CGC | ATT | ACG | TTT | GGT | G-- | -TC | TCA | GAT | ACC | TCA | GAC | AAT | AAT | CAG | AAT | GCA | GAA | CGT | GCT | GGA | GCG | CGG | CCA | AAG | CAA | AGA | AGA | CCG | CAA | GGC | CCT | CCT | AAC | AAC | ACA | GCA | TCC | TGG | TTC | ACA | GCT | CTC | ACT | CAG | CAT | GGT | AAA | GAA | GGT | CTC | TCC | TTT | CCG | CGA | GGA | CAG | GGA | GTG | CCC | GTT | AAT | ACC | AAT | AGT | ACC | AGG | GAC | GAC | CAA | ATT | GGC | TAC | TAT | CGC | AGA | GCT | ACC | CGA | CGA | GTT | CGT | GGT | GGT | GAT | GGT | AAG | ATG | AAA | GAA | CTC | AGC | CCG | CGC | TGG | TAC | TTC | TAC | TAT | CTA | GGA | ACT | GGA | CCA | GAG | GCC | GCA | TTA | CCT | TAT | GGT | GCT | AAC | AAA | GAT | GGC | ATA | GTT | TGG | GTC | GCT | ACA | GAA | GGA | GCC | CTA | AAC | ACG | CCT | AAA | GAT | CAC | ATT | GGC | ACG | CGC | AAT | CCC | AAC | AAC | AAT | GCT | GCC | ATT | GTC | ATA | CAG | TTA | CCA | CAA | GGT | ACT | ACC | TTG | CCA | AAA | GGC | TTC | TAC | GCT | GAA | GGA | AGT | CGT | GGT | GGC | AGT | CAA | GCC | TCC | TCG | CGT | TCT | AAC | TCA | CGT | AGC | CGT | GGT | AAT | TCC | AGA | AAT | TCA | ACA | CCT | AGC | AGC | AGC | AGA | GGT | TCA | TCA | CCT | GCA | CGC | ATG | GCT | GCC | --- | GGA | GGA | GAT | ACG | GCA | CTT | GCA | TTA | TTG | CTG | TTA | GAC | AGG | CTG | AAC | CAG | CTT | GAG | AGC | AAA | GTT | TCA | GGT | AAG | AC- | --A | CCA | CAA | CAA | TCA | CAG | GTT | GTC | ACA | AAG | AAA | ACA | GCT | GCT | GAG | GCT | TCT | AAA | AAG | CCC | AGA | CAG | AAA | AGA | ACA | GCT | ACC | AAA | GCC | TAT | AAT | GTT | ACT | CAG | GCT | TTT | GGT | AGG | CGA | GGT | CCC | GAA | CCT | ACA | CAG | GGA | AAT | TTC | GGT | GAC | CAG | GAA | TTA | ATC | AGA | TTA | GGT | ACT | GAT | TAC | AAA | AAT | TGG | CCA | CAG | ATT | GCA | CAG | TTT | GCA | CCC | AGT | GCT | TCT | GCA | TTC | TTT | GGC | ATG | TCC | CGT | ATA | GGA | ATG | GAA | GTC | ACA | CCT | ACA | GGG | ACT | TGG | TTA | ACC | TAT | AAT | GGT | GCC | ATA | AAA | TTG | GAT | GAT | AAA | GAC | CCA | AAT | TTC | AAA | GAC | CAA | GTT | ATT | CTG | CTT | AAT | AAG | CAC | ATT | GAT | GCT | TAT | AAG | ACA | TTT | CCA | CCT | ACA | GAA | CCT | AAA | AAG | GAC | AAG | AAG | AAA | AAG | GCT | GAT | GAA | GTA | CAG | TCA | CTG | CCG | CAG | CGT | CAG | AAG | AAA | CAG | GCA | ACT | GTG | ACT | CTG | TTA | CCT | GCA | GCA | GAT | TTG | GAT | GAT | TTT | TCC | AAA | CAA | CTT | CAG | AAT | TCC | ATG | AAT | ---GCTTCA | CCT | GAT | TCT | ACT | CAG | GCC | TAA |
nucleocapsid_phosphoprotein