NC_045512_SARS_CoV_2_Wuhan_Hu_1_aa | M | K | F | L | V | F | L | G | I | I | T | T | V | A | A | F | H | Q | E | C | S | L | Q | S | C | T | Q | H | Q | P | Y | V | V | D | D | P | C | P | I | H | F | Y | S | K | W | Y | I | R | V | G | A | R | K | S | A | P | L | I | E | L | C | V | D | E | A | G | S | K | S | P | I | Q | Y | I | D | I | G | N | Y | T | V | S | C | L | P | F | T | I | N | C | Q | E | P | K | L | G | S | L | V | V | R | C | S | F | Y | E | D | F | L | E | Y | H | D | V | R | V | V | L | D | F | I | * |
NC_045512_SARS_CoV_2_Wuhan_Hu_1 | ATG | AAA | TTT | CTT | GTT | TTC | TTA | GGA | ATC | ATC | ACA | ACT | GTA | GCT | GCA | TTT | CAC | CAA | GAA | TGT | AGT- | TTA | CAG | TCA | TGT | ACT | CAA | CAT | CAA | CCA | TAT | GTA | GTT | GAT | GAC | CCG | TGT | CCT | ATT | CAC | TTC | TAT | TCT | AAA | TGG | TAT | ATT | AGA | GTA | GGA | GCT--- | AGA | AAA | TCA | GCA | CCT | TTA | ATT | GAA | TTG | TGC | GTG | GAT | GAG | GCT | GGT | TCT | AAA | TCA | CCC | ATT | CAG | TAC | ATC | GAT | ATC | GGT | AAT | TAT | ACA | GTT | TCC | TGT | TTA | CCT | TTT | ACA | ATT | AAT | TGC | CAG | GAA | CCT | AAA | TTG | GGT | AGT | CTT | GTA | GTG | CGT | TGT | TCG | TTC | TAT | GAA | GAC | TTT | TTA | GAG | TAT | CAT | GAC | GTT | CGT | GTT | GT---T | TTA | G--AT | TTC | ATC | TAA |
MN996532_Bat_CoV_RaTG13 | ATG | AAA | CTT | CTT | GTT | TTC | TTA | GGA | ATC | CTC | ACA | ACA | GTA | ACT | GCA | TTT | CAC | CAA | GAA | TGT | AGT- | TTA | CAG | TCA | TGT | GCT | CAA | CAC | CAA | CCA | TAT | GTA | GTT | GAT | GAC | CCG | TGT | CCT | ATT | CAC | TTC | TAT | TCT | AAA | TGG | TAC | ATT | AGA | GTA | GGA | GCT--- | AGA | AAA | TCA | GCA | CCT | TTA | ATT | GAA | TTG | TGC | GTG | GAT | GAG | GTT | GGT | TCT | AAA | TCA | CCC | ATT | CAG | TAC | ATC | GAT | ATC | GGC | AAT | TAT | ACA | GTT | TCC | TGT | TCA | CCT | TTT | ACA | ATT | AAT | TGC | CAG | GAG | CCT | AAA | TTG | GGT | AGT | CTT | GTA | GTG | CGT | TGT | TCG | TTC | TAT | GAA | GAC | TTT | TTA | GAG | TAT | CAT | GAC | GTT | CGT | GTT | GT---T | TTA | G--AT | TTC | ATC | TAA |
MG772933_Bat_SARS_like_CoV_bat_SL_CoVZC45 | ATG | AAA | TTT | CTT | GTT | TTC | TTA | GGA | ATT | CTT | ACA | ACA | GTA | GCT | GCA | TTC | CAT | CAG | GAA | TGT | AGT- | TTA | CAG | TCA | TGT | GCT | CAG | CAT | CAA | CCC | TAT | GTA | GTT | GAT | GAC | CCT | TGT | CCA | ATT | CAC | TTC | TAC | TCA | CGA | TGG | TAT | ATC | AGA | GTG | GGA | GCT--- | AGA | AAA | TCA | GCA | CCT | TTG | ATT | GAA | TTG | TGT | GTT | GAT | GAG | GTA | GGC | TCT | AAG | TCA | CCC | ATT | CAA | TAC | ATT | GAC | ATT | GGT | AAT | TAC | ACA | GTT | TCC | TGT | TCT | CCT | TTT | ACA | ATT | AAT | TGC | CAG | GAA | CCT | AAA | TTA | GGT | AGT | CTC | GTA | GTA | CGG | TGT | TCG | TAT | TAT | GAA | GAC | TTT | CTA | GAG | TAC | CAT | GAC | ATT | CGT | GTT | GT---C | TTA | G--AT | TTC | ATC | TAA |
MG772934_Bat_SARS_like_CoV_bat_SL_CoVZXC21 | ATG | AAA | TTT | CTT | GTT | TTC | TTA | GGA | ATT | CTT | ACA | ACA | GTA | GCT | GCA | TTC | CAT | CAG | GAA | TGT | AGT- | TTA | CAG | TCA | TGT | GCT | CAA | CAT | CAA | CCC | TAT | GTA | GTT | GAT | GAC | CCT | TGT | CCA | ATT | CAC | TTC | TAC | TCA | CGA | TGG | TAT | ATC | AGA | GTG | GGA | GCT--- | AGA | AAA | TCA | GCA | CCT | TTG | ATT | GAA | TTG | TGT | GTT | GAC | GAG | GTA | GGC | TCT | AAG | TCA | CCC | ATT | CAA | TAC | ATT | GAC | ATT | GGT | AAT | TAC | ACA | GTT | TCC | TGT | TCT | CCT | TTT | ACA | ATT | AAT | TGC | CAG | GAA | CCT | AAA | TTA | GGT | AGT | CTC | GTA | GTA | CGG | TGT | TCG | TAT | TAT | GAA | GAC | TTT | CTA | GAG | TAC | CAT | GAC | ATT | CGT | GTT | GT---C | TTA | G--AT | TTC | ATC | TAA |
NC_004718_SARS_CoV | ATG | AAA | CTT | CTC | ATT | GTT | TTG | ACT | TGT | ATT | TCT | CTA | TGC | AGT | TGC | ATA | TGC | ACT | GTA | --- | ---- | GTA | CAG | CGC | TGT | GCA | TCT | AAT | AAA | CCT | CAT | GTG | CTT | GAA | GAT | CCT | TG- | --- | --- | --- | --- | --- | --- | --- | --- | --- | -TA | AGG | TAC | AAC | ACTAGG | GGT | AAT | ACT | TAT | AGC | ACT | GCT | TGG | CTT | TGT | GCT | CTA | GGA | AAG | GTT | TTA | CCT | TTT | CAT | AGA | TGG | CAC | ACT | ATG | GTT | CAA | ACA | TGC | ACA | CCT | --- | --- | --- | AAT | GTT | ACT | ATC | AAC | TGT | CAA | GAT | CCA | GCT | GGT | GGT | GCG | CTT | ATA | GCT | AGG | TGT | TGG | TAC | CTT | CAT | GAA | GGT | CAC | CAA | ACT | GCT | GCA | TTT | AGA | GAC | GT---A | CTT | GTTGT | TTT | AAA | TAA |
KT444582_SARS_like_CoV_WIV16 | ATG | AAA | CTT | CTC | ATT | GTT | TTA | GGA | CTC | TTA | ACA | TCA | GTG | TAT | TGC | ATG | CAT | AAA | GAA | TGC | AGT- | ATA | CAA | GAA | TGT | TGT | GAA | AAT | CAA | CCA | TTC | CAA | CCT | GAA | GAC | CCA | TGT | CCA | ATA | CAT | TAT | TAT | TCG | GAC | TGG | TTT | GTA | AAA | ATT | GGA | CCT--- | CGC | AAG | TCT | GCT | CGC | CTA | GTA | CAA | CTT | TGT | GCT | GGT | GAA | TAT | GGA | CAC | AGA | GTT | CCA | ATA | CAT | TAT | GAA | ATG | TTT | GGC | AAT | TAT | ACT | ATT | TCA | TGT | GAA | CCA | CTT | GAA | ATA | AAT | TGT | CAA | AAC | CCA | CCA | GTT | GGA | AGT | CTC | ATT | GTA | CGT | TGT | TCA | TAT | GAT | GTT | GAC | TTT | ATG | GAG | TAT | CAC | GAC | GTT | CGT | GTT | GT---T | CTA | G--AT | TTC | ATC | TAA |
KY417146_Bat_SARS_like_CoV_Rs4231 | ATG | AAA | CTT | CTC | ATT | GTT | TTA | GGA | CTC | TTA | ACA | TCA | GTG | TAT | TGC | ATG | CAT | AAA | GAA | TGC | AGT- | ATA | CAA | GAA | TGT | TGT | GAA | AAT | CAA | CCA | TTC | CAA | CCT | GAA | GAC | CCA | TGT | CCA | ATA | CAT | TAT | TAT | TCG | GAC | TGG | TTT | GTA | AAA | ATT | GGA | CCT--- | CGC | AAG | TCT | GCT | CGC | CTA | GTA | CAA | CTT | TGT | GCT | GGT | GAA | TAT | GGA | CAC | AGA | GTT | CCA | ATA | CAT | TAT | GAA | ATG | TTT | GGC | AAT | TAT | ACT | ATT | TCA | TGT | GAA | CCA | CTT | GAA | ATA | AAT | TGT | CAA | AAC | CCA | CCA | GTT | GGA | AGT | CTC | ATT | GTA | CGT | TGT | TCA | TAT | GAT | GTT | GAC | TTT | ATG | GAG | TAT | CAC | GAC | GTT | CGT | GTT | GT---T | CTA | G--AT | TTC | ATC | TAA |
MK211376_CoV_BtRs_BetaCoV_YN2018B | ATG | AAA | CTT | CTC | ATT | GTT | TTA | GGA | CTC | TTA | ACT | TCA | GTG | TAT | TGC | ATG | CAT | AAA | GAA | TGC | AGT- | ATA | CAA | GAA | TGT | TGT | GAA | AAT | CAA | CCA | TTC | CAA | CTT | GAA | GAC | CCA | TGT | CCA | ATA | CAT | TAC | TAT | TCG | GAC | TGG | TTT | GTA | AAA | ATT | GGA | CCT--- | CGT | AAG | TCT | GCT | CGC | CTA | GTA | CAA | CTT | TGT | GCT | GGT | GAA | TAT | GGA | CAT | AGA | GTT | CCA | ATA | CAT | TAC | GAA | ATG | TTT | GGC | AAT | TAC | ACT | ATT | TCA | TGT | GAA | CCA | CTT | GAA | ATA | AAT | TGT | CAA | AAC | CCA | CCA | GTT | GGA | AGT | CTC | ATT | GTA | CGT | TGT | TCA | TAT | GAT | GTT | GAC | TTT | ATG | GAG | TAT | CAC | GAC | GTT | CGT | GTT | GT---T | CTA | G--AT | TTC | ATC | TAA |
KY417151_Bat_SARS_like_CoV_Rs7327 | ATG | AAA | CTT | CTC | ATT | GTT | TTA | GGA | CTC | TTA | ACA | TCA | GTG | TAT | TGC | ATG | CAT | AAA | GAA | TGC | AGT- | ATA | CAA | GAA | TGT | TGT | GAA | AAT | CAA | TCA | TTC | CAA | CTT | GAA | GAC | CCA | TGT | CCA | ATA | CAT | TAC | TAT | TCG | GAC | TGG | TTT | GTA | AAA | ATT | GGA | CCT--- | CGC | AAG | TCT | GCG | CGC | CTA | GTA | CAA | CTT | TGT | GCT | GGT | GAA | TAT | GGA | CAT | AGA | GTT | CCA | ATA | CAT | TAT | GAA | ATG | TTT | GGC | AAT | TAT | ACT | ATC | TCA | TGT | GAA | CCA | CTT | GAA | ATA | AAT | TGT | CAA | AAC | CCA | CCA | GTT | GGA | AGT | CTC | ATC | GTA | CGT | TGT | TCA | TAT | GAT | GTT | GAC | TTT | ATG | GAG | TAT | CAC | GAC | GTT | CGT | GTT | GT---T | CTA | G--AT | TTC | ATC | TAA |
KY417152_Bat_SARS_like_CoV_Rs9401 | ATG | AAA | CTT | CTC | ATT | GTT | TTA | GGA | CTC | TTA | ACA | TCA | GTG | TAT | TGC | GTG | CAT | AAA | GAA | TGC | AGT- | ATA | CAA | GAA | TGT | TGT | GAA | AAT | CAA | CCA | TTC | CAA | CCT | GAA | GAC | CCA | TGT | CCA | ATA | CAT | TAT | TAT | TCG | GAC | TGG | TTT | GTA | AAA | ATT | GGA | CCT--- | CGC | AAG | TCT | GCT | CGC | CTA | GTA | CAA | CTT | TGT | GCT | GGT | GAA | TAT | GGA | CGC | AGA | GTT | CCA | ATA | CAT | TAT | GAA | ATG | TTT | GGC | AAT | TAT | ACT | ATT | TCA | TGT | GAA | CCA | CTT | GAA | ATA | AAT | TGT | CAA | AAC | CCA | CCA | GTT | GGA | AGT | CTC | ATT | GTA | CGT | TGT | TCA | TAT | GAT | GTT | GAC | TTT | ATG | GAG | TAT | CAC | GAC | GTT | CGT | GTT | GT---T | CTA | G--AT | TTC | ATC | TAA |
KY417144_Bat_SARS_like_CoV_Rs4084 | ATG | AAA | CTT | CTC | ATT | GTT | TTG | ACT | TGT | ATT | TCT | CTA | TGC | AGT | TGC | ATA | CGC | ACT | G-- | --- | -TT- | GTA | CAG | CGC | TGT | GCA | TCT | AAC | AAA | CCT | CAT | GTG | CTT | GAA | GAT | CCT | TGC | CCT | ACT | GGT | TAC | CAA | CCA | GAA | TGT | AAG | GTA | CAA | C-- | ACT | AGA--- | GGT | AAT | ACT | TAT | AGC | ACT | GCT | TGG | CTT | TGT | GCT | CTA | GGA | AAG | GTA | TTA | CCT | TTT | CAT | AGA | TGG | CAC | ACT | ATG | GTT | CAA | ACA | TGC | ACA | CCT | --- | --- | --- | AAT | GTT | ACT | ATC | AAC | TGT | CAA | GAT | CCA | GTT | GGT | GGT | GCG | CTT | ATA | GCT | AGG | TGT | TGG | TAC | CTT | CAT | GAA | GGT | CAC | CAA | ACT | GCT | GCA | TTT | AGA | GAC | AT---A | CTT | GTTGT | TTT | AAC | TAA |
KF367457_Bat_SARS_like_CoV_WIV1 | ATG | AAA | CTT | CTC | ATT | GTT | TTA | GGA | CTC | TTA | ACT | TCA | GTG | TAT | TGC | ATG | CAT | AAA | GAA | TGC | AGT- | ATA | CAA | GAA | TGT | TGT | GAA | AAT | CAA | CCA | TTC | CAA | CTT | GAA | GAC | CCA | TGT | CCA | ATA | CAT | TAC | TAT | TCG | GAC | TGG | TTT | GTA | AAA | ATT | GGA | CCT--- | CGT | AAG | TCT | GCT | CGC | CTA | GTA | CAA | CTT | TGT | GCT | GGT | GAA | TAT | GGA | CAT | AGA | GTT | CCA | ATA | CAT | TAC | GAA | ATG | TTT | GGC | AAT | TAC | ACT | ATT | TCA | TGT | GAA | CCA | CTT | GAA | ATA | AAT | TGT | CAA | AAC | CCA | CCA | GTT | GGA | AGT | CTC | ATT | GTA | CGT | TGT | TCA | TAT | GAT | GTT | GAC | TTT | ATG | GAG | TAT | CAC | GAC | GTT | CGT | GTT | GT---T | CTA | G--AT | TTC | ATC | TAA |
KU973692_UNVERIFIED_SARS_related_CoV_F46 | ATG | AAA | CTT | CTC | ATT | GTT | TTG | ACT | TGT | ATT | TCT | CTA | TGC | AGT | TGC | ATA | CGC | ACT | GTA | --- | ---- | GTA | CAA | CGC | TGT | GCA | TCT | AAC | AAA | CCT | CAT | GTG | CTT | GAA | AAC | CCT | TGT | CCC | ACT | GGT | TAT | CAA | CCA | GAA | TGG | AAC | ATA | A-- | --- | GGT | ACAACA | CTA | AGG | GCG | GTA | CTT | ATA | GCA | CAG | CTT | GGC | TAT | GTG | CAC | TA- | GGA | AAG | GTT | TTA | CCT | TTT | CAT | AGA | TGG | CAC | ACT | ATG | GTT | CAA | GCG | TGC | ACA | CCT | AAT | G-- | -TT | ACT | ATC | AGC | TGC | CAA | GAT | CCA | GCC | GGT | GGT | GCT | CTC | ATA | GCT | AGG | TGT | TGG | TAC | CTG | CAT | GAA | GGT | CAC | CAA | ACT | GCT | GCA | TTT | AGA | GAC | AT---A | CTT | GTTGT | TTT | AAC | TAA |
KY417145_Bat_SARS_like_CoV_Rf4092 | ATG | AAA | CTT | CTC | ATT | GTT | TTG | ACT | TGT | ATT | TCT | CTA | TGC | AGT | TGC | ATA | CGC | ACT | GTT | --- | ---- | GTA | CAG | CGC | TGT | GCA | TCT | AAC | AAA | CCT | CAT | GTG | CTT | GAA | GAT | CCT | TGC | CCT | ACT | GGT | TAC | CAA | CCA | GAA | TGG | AAT | ATA | A-- | --- | GGT | ACAACA | CTA | GAG | GTA | ATA | CTT | ATA | GCA | CTG | CTT | GGC | TTT | GTG | CTC | TA- | GGA | AAG | GTA | TTA | CCT | TTT | CAT | AGA | TGG | CAC | ACT | ATG | GTT | CAA | ACA | TGC | ACA | CCT | AAT | G-- | -TT | ACT | ATC | AAC | TGT | CAA | GAT | CCA | GTT | GGT | GGT | GCG | CTT | ATA | GCT | AGG | TGT | TGG | TAC | CTT | CAT | GAA | GGT | CAC | CAA | ACT | GCT | GCA | TTT | AGA | GAC | AT---A | CTT | GTTGT | TTT | AAA | TAA |
KJ473816_BtRs_BetaCoV_YN2013 | ATG | AAA | CTT | CTC | ATT | GTT | TTG | ACT | TGT | ATT | TCT | CTA | TGC | AGT | TGC | ATA | CGC | ACT | GTT | --- | ---- | GTA | CAG | CGC | TGT | GCA | TCT | AAT | AAA | CCT | CAT | GTG | CTT | GAA | GAT | CCT | TGT | CCT | ACT | GGT | TAC | CAA | CCT | GAA | TGG | AAT | ATA | A-- | --- | GGT | ACAACA | CTA | GAG | GTA | ATA | CTT | ACA | GCA | CTG | CTT | GGC | TTT | GTG | CTC | TA- | GGA | AAG | GTT | TTA | CCT | TTT | CAT | AGA | TGG | CAC | ACT | ATG | GTT | CAA | ACA | TGC | ACA | CCT | AAT | G-- | -TT | ACT | ATC | AAC | TGT | CAA | GAT | CCA | GCT | GGT | GGT | GCG | CTT | ATA | GCT | AGG | TGT | TGG | TAC | CTT | CAC | GAA | GGT | CAC | CAA | ACT | GCT | GCA | TTT | AGA | GAC | GT---A | CTT | GTTGT | TCT | AAA | TAA |
KY770858_Bat_CoV_Anlong_103 | ATG | AAA | CTT | CTC | ATT | GTT | TTG | ACT | TGT | ATT | TCT | CTA | TGC | AGT | TGC | ATA | CGC | ACT | GTT | --- | ---- | GTA | CAG | CGC | TGT | GCA | TCT | AAT | AAA | CCT | CAT | GTG | CTT | GAA | GAC | CCT | TGT | CCT | ACT | GGT | TAT | CAA | CCT | GAA | TGG | AAT | ATA | C-- | --- | GGT | ACAACA | CTA | GAG | GTA | ATA | CTT | ATA | GCA | CTG | CTT | GGC | TTT | GTG | CTC | TA- | GGA | AAG | GTT | TTA | CCT | TTT | CAT | AGA | TGG | CAC | ACT | ATG | GTT | CAA | ACA | TGC | ACA | CCT | AAT | G-- | -TT | ACT | ATC | AAC | TGT | CAA | GAT | CCA | GCT | GGT | GGT | GCG | CTT | ATG | GCT | AGG | TGT | TGG | TAC | CTT | CAC | GAA | GGT | CAC | CAA | ACT | GCT | GCA | TTT | AGA | GAC | GT---A | CTT | GTTGT | TTT | AAA | TAA |
KY417143_Bat_SARS_like_CoV_Rs4081 | ATG | AAA | CTT | CTC | ATT | GTT | TTA | GGA | CTC | TTA | ACA | TCA | GTG | TAT | TGC | ATG | CAT | AAA | GAA | TGC | AGT- | ATA | CAA | GAA | TGT | TGT | GAA | AAT | CAA | CCA | TTC | CAA | CTT | GAA | GAC | CCA | TGT | CCA | ATA | CAT | TAT | TAT | TCG | GAC | TGG | TTT | ATA | AAA | ATT | GGA | CCTC-- | -GC | AAG | TCT | GCT | CGC | CTA | GTA | CAA | CTT | TGT | GCT | GGT | GAA | TAT | GGA | CAC | AGA | GTT | CCA | ATA | CAT | TAT | GAA | ATG | TTT | GGC | AAT | TAT | ACT | ATT | TCA | TGT | GAA | CCA | CTT | GAA | ATA | AAT | TGT | CAA | AAC | CCA | CCA | GTT | GGA | AGT | CTC | ATT | GTA | CGT | TGT | TCA | TAT | GAT | GTT | GAC | TTT | ATG | GAG | TAT | CAC | GAC | GTT | CGT | GTT | GT---T | CTA | G--AT | TTC | ATC | TAA |
KY417149_Bat_SARS_like_CoV_Rs4255 | ATG | AAA | CTT | CTC | ATT | GTT | TTA | GGA | CTC | TTA | ACA | TCA | GTG | TAT | TGC | ATG | CAT | AAA | GAA | TGC | AGT- | ATA | CAA | GAA | TGT | TGT | GAA | AAT | CAA | CCA | TTC | CAA | CTT | GAA | GAC | CCA | TGT | CCA | ATA | CAT | TAT | TAT | TCG | GAC | TGG | TTT | ATA | AAA | ATT | GGA | CCTC-- | -GC | AAG | TCT | GCT | CGC | CTA | GTA | CAA | CTT | TGT | GCT | GGT | GAA | TAT | GGA | CAT | AGA | GTT | CCA | ATA | CAT | TAT | GAA | ATG | TTT | GGC | AAT | TAT | ACT | ATT | TCA | TGT | GAA | CCA | CTT | GAA | ATA | AAT | TGT | CAA | AAC | CCA | CCA | GTT | GGA | AGT | CTC | ATT | GTA | CGT | TGT | TCA | TAT | GAT | GTT | GAC | TTT | ATG | GAG | TAT | CAT | GAC | GTT | CGT | GTT | GT---T | CTA | G--AT | TTC | ATC | TAA |
MK211378_CoV_BtRs_BetaCoV_YN2018D | ATG | AAA | CTT | CTC | ATT | GTT | TTA | GGA | CTC | TTA | ACA | TCA | GTG | TAT | TGC | ATG | CAT | AAA | GAA | TGC | AGT- | ATA | CAA | GAA | TGT | TGT | GAA | AAT | CAA | CCA | TTC | CAA | CCT | GAA | GAC | CCA | TGT | CCA | ATA | CAT | TAC | TAT | TCG | GAC | TGG | TTT | GTA | AAA | ATT | GGA | CCTC-- | -GC | AAG | TCT | GCT | CGC | CTA | GTA | CAA | CTT | TGT | GCT | GGT | GAA | TAT | GGA | CAT | AGA | GTT | CCA | ATA | CAT | TAT | GAA | ATG | TTT | GGC | AAT | TAT | ACT | ATT | TCA | TGT | GAA | CCA | CTT | GAA | ATA | AAT | TGT | CAA | AAC | CCA | CCA | GTT | GGA | AGT | CTC | ATT | GTA | CGT | TGT | TCA | TAT | GAT | GTT | GAC | TTT | ATG | GAG | TAT | CAC | GAC | GTT | CGT | GTT | GT---T | CTA | G--AT | TTC | ATC | TAA |
FJ588686_Bat_SARS_CoV_Rs672_2006 | ATG | AAA | CTT | CTC | ATT | GTT | TTA | GGA | CTC | TTA | ACA | TCA | GTA | TAT | TGC | ATG | CAT | AAA | GAA | TGC | AGT- | ATA | CAA | GAA | TGT | TGT | GAA | AAC | CAA | CCA | TTC | CAA | CTT | GAA | GAT | CCA | TGT | CCA | ATA | CAT | TAC | TAT | TCG | GAC | TGG | TTT | TTA | AAA | ATT | GGA | CCTC-- | -GT | AAG | TCT | GCT | CGC | CTA | GTA | CAA | CTT | TGT | GCT | GGT | GAA | TAT | GGA | CAC | AGA | GTT | CCA | ATA | CAT | TAT | GAA | ATG | TTT | GGC | AAT | TAT | ACT | ATT | TCG | TGT | GAA | CCA | TTT | GAA | ATA | AAT | TGT | CAA | AAC | CCA | CCA | GTT | GGA | AGT | CTC | ATT | GTA | CGT | TGT | TCA | TAT | GAT | GTT | GAC | TTT | ATG | GAG | TAT | CAC | GAC | GTT | CGT | GTT | GT---T | CTA | G--AT | TTC | ATC | TAA |
MK211377_CoV_BtRs_BetaCoV_YN2018C | ATG | AAA | CTT | CTC | ATT | GTT | TTA | GGA | CTC | TTA | ACA | TCA | GTG | TAT | TGC | ATG | CAT | AAA | GAA | TGC | AGT- | ATA | CAA | GAA | TGT | TGT | GAA | AAT | CAA | CCA | TTC | CAA | CTT | GAA | GAC | CCA | TGT | CCA | ATA | CAT | TAC | TAT | TCG | GAC | TGG | TTT | GTA | AAA | ATT | GGA | CCTC-- | -GC | AAG | TCT | GCG | CGC | CTA | GTA | CAA | CTT | TGT | GCT | GGT | GAA | TAT | GGA | CAT | AGA | GTT | CCA | ATA | CAT | TAT | GAA | ATG | TTT | GGC | AAT | TAT | ACT | ATC | TCA | TGT | GAA | CCA | CTT | GAA | ATA | AAT | TGT | CAA | AAT | CCA | CCA | GTT | GGA | AGT | CTC | ATT | GTA | CGT | TGT | TCA | TAT | GAT | GTT | GAC | TTT | ATG | GAG | TAT | CAC | GAC | GTT | CGT | GTT | GT---T | CTA | G--AT | TTC | ATC | TAA |
KY417142_Bat_SARS_like_CoV_As6526 | ATG | AAA | CTT | CTC | ATT | GTT | TTA | GGA | CTC | TTA | ACA | TCA | GTG | TAT | TGC | ATG | CAT | AAA | GAA | TGC | AGT- | ATA | CAA | GAA | TGT | TGT | GAA | AAT | CAA | CCA | TTC | CAA | CTT | GAA | GAC | CCA | TGT | CCA | ATA | CAT | TAT | TAT | TCG | GAC | TGG | TTT | ATA | AAA | ATT | GGA | CCTC-- | -GC | AAG | TCT | GCT | CGC | CTA | GTA | CAA | CTT | TGT | GCT | GGT | GAA | TAT | GGA | CAT | AGA | GTT | CCA | ATA | CAT | TAT | GAA | ATG | TTT | GGC | AAT | TAT | ACT | ATT | TCA | TGT | GAA | CCA | CTT | GAA | ATA | AAT | TGT | CAA | AAC | CCA | CCA | GTT | GGA | AGT | CTC | ATT | GTA | CGT | TGT | TCA | TAT | GAT | GTT | GAC | TTT | ATG | GAG | TAT | CAT | GAC | GTT | CGT | GTT | GT---T | CTA | G--AT | TTC | ATC | TAA |
KY417147_Bat_SARS_like_CoV_Rs4237 | ATG | AAA | CTT | CTC | ATT | GTT | TTA | GGA | CTC | TTA | ACT | TCA | GTG | TAT | TGC | ATG | CAT | AAA | GAA | TGC | AGT- | ATA | CAA | GAA | TGT | TGT | GAA | AAT | CAA | CCA | TTC | CAA | CTT | GAA | GAC | CCA | TGT | CCA | ATA | CAT | TAC | TAT | TCG | GAC | TGG | TTT | GTA | AAA | ATT | GGA | CCTC-- | -GT | AAG | TCT | GCT | CGC | CTA | GTA | CAA | CTT | TGT | GCT | GGT | GAA | TAT | GGA | CAT | AGA | GTT | CCA | ATA | CAT | TAC | GAA | ATG | TTT | GGC | AAT | TAC | ACT | ATT | TCA | TGT | GAA | CCA | CTT | GAA | ATA | AAT | TGT | CAA | AAC | CCA | CCA | GTT | GGA | AGT | CTC | ATT | GTA | CGT | TGT | TCA | TAT | GAT | GTT | GAC | TTT | ATG | GAG | TAT | CAC | GAC | GTT | CGT | GTT | GT---T | CTA | G--AT | TTC | ATC | TAA |
KY417148_Bat_SARS_like_CoV_Rs4247 | ATG | AAA | CTT | CTC | ATT | GTT | TTA | GGA | CTC | TTA | ACA | TCA | GTG | TAT | TGC | ATG | CAT | AAA | GAA | TGC | AGT- | ATA | CAA | GAA | TGT | TGT | GAA | AAT | CAA | CCA | TTC | CAA | CCT | GAA | GAC | CCA | TGT | CCA | ATA | CAT | TAT | TAT | TCG | GAC | TGG | TTT | GTA | AAA | ATT | GGA | CCTC-- | -GC | AAG | TCT | GCT | CGC | CTA | GTA | CAA | CTT | TGT | GCT | GGT | GAA | TAT | GGA | CAC | AGA | GTT | CCA | ATA | CAT | TAT | GAA | ATG | TTT | GGC | AAT | TAT | ACT | ATT | TCA | TGT | GAA | CCA | CTT | GAA | ATA | AAT | TGT | CAA | AAC | CCA | CCA | GTT | GGA | AGT | CTC | ATT | GTA | CGT | TGT | TCA | TAT | GAT | GTT | GAC | TTT | ATG | GAT | TAT | CAC | GAC | GTT | CGT | GTT | GT---T | CTA | G--AT | TTC | ATC | TAA |
MK211375_CoV_BtRs_BetaCoV_YN2018A | ATG | AAA | CTT | TTC | GTT | GTT | TTA | GGA | CTC | TTA | ACA | TCA | GTA | TAT | TGC | ATG | CAC | AAA | GAA | TGC | AGT- | ATA | CAA | GAA | TGT | TGT | GAA | AAT | CAA | CCA | TTC | CAA | CTT | GAA | GAC | CCA | TGT | CCA | ATA | CAT | TAC | TAT | TCG | GAC | TGG | TTT | TTA | AAA | ATT | GGA | CCTC-- | -GT | AAG | TCT | GCT | CGC | CTA | GTA | CAA | CTT | TGT | GCT | GGT | GAA | TAT | GGA | CAT | AGA | GTT | CCA | ATA | CAT | TAT | GAA | ATG | TTT | GAC | AAT | TAT | ACT | ATC | TCA | TGC | GAA | CCA | CTT | GAA | ATT | AAT | TGT | CAA | AAC | CCA | CCA | GTT | GGA | AGT | CTC | ATT | GTA | CGT | TGT | TCA | TAT | GAT | GTT | GAC | TTT | TTG | GAG | TAT | CAC | GAC | GTT | CGT | GTT | GT---T | CTA | G--AT | TTT | ATC | TAA |
DQ071615_Bat_SARS_CoV_Rp3 | ATG | AAA | CTT | CTC | ATT | GTT | TTT | GGA | CTC | TTA | ACA | TCA | GTA | TAC | TGC | ATC | CAT | AAG | GAA | TGC | AGC- | ATA | CAA | GAG | TGT | TGT | GAA | AAT | CAA | CCC | TAC | CAA | ATT | GAA | GAC | CCT | TGT | CCA | ATA | CAT | TAC | TAT | TCG | GAC | TGG | TTT | ATT | AAA | ATT | GGA | TCCA-- | -GA | AAG | TCT | GCT | CGC | CTT | GTA | CAA | CTG | TGC | GAG | GGA | GAC | TAT | GGT | AAA | AGA | ATT | CCA | ATT | CAT | TAT | CAA | ATG | TTT | GGC | AAT | TAC | ACC | ATC | TCT | TGT | GAA | CCA | CTC | GAG | ATA | AAC | TGT | CAA | GCA | CCA | CCA | GTA | GGT | AGT | CTA | ATA | GTG | CGT | TGT | TCG | TAC | GAT | TAT | GAC | TTT | GTT | GAG | CAT | CAT | GAC | GTT | CGT | GTT | GT---T | CTA | G--AT | TTC | GTC | TAA |
KP886808_Bat_SARS_like_CoV_YNLF_31C | ATG | AAA | CTT | CTC | ATT | GTT | TTG | ACT | TGT | ATT | TCT | CTT | TGC | TGC | TGT | ATA | CGT | ACT | G-- | --- | -TG- | GTA | CAG | CGC | TGT | GTA | TCT | AAT | ACA | CCT | TAT | GTT | CTT | GAA | AAT | CCA | TGT | CCC | ACT | GGT | TAT | CGG | CCA | GAG | TGG | AAC | ATT | AGG | TAT | AAC | ACTAGG | GGT | AAT | ACA | TAT | AAC | ACT | GCT | AGG | CTG | TGT | GCT | TTA | GGA | AAG | GTT | TTG | TCT | TTT | CAT | AGA | TGG | CAC | ACT | ATG | GTT | CAA | GCA | TGT | AC- | ACC | TAA | TA- | --- | --- | -TC | ACC | ATT | AAT | TGT | CAA | GAT | CCG | GTG | GGT | GGT | GCA | CTT | GTA | GCG | AGA | TGT | TGG | TAC | TTT | CAC | AAA | GGT | TCC | CAG | ACT | GCT | ACA | TTT | AGA | GAC | AT---A | CAC | GTAGA | TCT | GTT | CTT |
KJ473815_BtRs_BetaCoV_GX2013 | ATG | AAA | CTT | CTC | ATT | GTT | TTG | ACT | TGT | ATT | TCT | CTA | TGC | AGT | TGC | ATA | CGC | ACT | G-- | --- | -TT- | GTA | CAG | CAT | TGT | GCA | TCT | AAT | AAA | CCT | CAT | GTG | CTT | GAA | GAT | CCT | TGT | CCT | ACT | GGT | TAT | CAA | CCT | GAA | TGG | AAT | ATA | AGG | TAC | AAC | ACTAGA | GGT | AAT | ACT | TAT | AGC | ACT | GCT | TGG | CTT | TGT | GCT | CTA | GGA | AAG | GTC | TTA | GCT | TTT | CAT | AGA | TGG | CAC | ACC | ATG | GTT | CAA | ACA | TGC | AC- | ACC | TAA | TG- | --- | --- | -TC | ACT | ATC | AAC | TGT | CAA | GAT | CCA | GCT | GGT | GGT | GCG | CTT | ATA | GCT | AGG | TGT | TGG | TAC | CTT | CAC | GAA | GGT | CAC | CAA | ACT | GCT | GCA | TTT | AGA | GAC | GT---A | CTT | GTTGT | TTT | AAA | TAA |
KF569996_Rhinolophus_affinis_CoV_LYRa11 | ATG | AAA | CTT | CTC | ATT | GTT | TTT | GGA | CTC | TTA | ACA | ATA | GTG | TAT | GGT | ATG | CAT | AAG | GAA | TGC | ACC- | ATA | CAA | GAG | TGT | TGT | GAA | AAC | CAA | CCC | TAC | ATT | CTA | GAA | GAT | CCC | TGT | CCA | ATA | CAC | TAC | TAT | TCG | GAC | TGG | TAT | TTA | AAG | ATT | GGA | CCAA-- | -GA | AAA | TCG | GCC | CGC | TTA | CTT | CAG | CTT | TGT | GCT | GGT | GAG | TAT | GGC | AAA | AGA | CTA | CCG | GTT | CAG | TAT | GAG | AAG | CTT | GGC | AAT | TAT | ACT | ATC | AAC | TGT | GAA | CCA | TTT | GAA | ATT | AAT | TGC | CAA | ACA | CCA | CCT | GTA | GGC | AGT | CTA | ATT | GTG | CGT | TGT | TCG | TAC | GAT | TAT | GAC | TTC | ATT | GAG | TAT | CAC | GAC | GTT | CGT | GTT | GT---T | CTA | G--AT | TTC | ATC | TAA |
JX993988_Bat_CoV_Cp_Yunnan2011 | ATG | AAA | CTT | CTC | ATT | GTT | TTT | GGA | CTC | TTA | ACA | ATA | GTG | TAT | GGT | ATG | CAT | AAG | GAA | TGC | ACC- | ATA | CAA | GAG | TGT | TGT | GAA | AAT | CAA | CCC | TAC | ATT | CTA | GAA | GAT | CCC | TGT | CCA | ATA | CAC | TAC | TAT | TCG | GAC | TGG | TAT | TTA | AAG | ATT | GGA | CCAA-- | -GA | AAG | TCG | GCC | CGC | TTA | CTT | CAG | CTT | TGT | GCT | GGT | GAG | TAT | GGC | AAA | AGA | CTA | CCG | GTT | CAG | TAT | GAG | AAG | CTT | GGC | AAC | TAT | ACT | ATC | AAC | TGT | GAA | CCA | TTT | GAA | ATT | AAT | TGC | CAA | ACA | CCA | CCT | GTA | GGC | AGT | CTA | ATT | GTG | CGT | TGT | TCG | TAC | GAT | TAT | GAC | TTC | ATT | GAG | TAT | CAC | GAC | GTT | CGT | GTT | GT---T | CTA | G--AT | TTC | ATC | TAA |
MK211374_CoV_BtRl_BetaCoV_SC2018 | ATG | AAA | CTT | CTC | ATT | GTT | TTT | GGA | CTC | TTG | ACA | TCA | GTA | TAT | TGC | ATG | CAT | AAA | GAA | TGC | AGT- | ATA | CAA | GAA | TGT | TGT | GAA | AAC | CAA | CCA | TTC | CAA | CTC | GAA | GAC | CCA | TGT | CCA | ATA | CAT | TAC | TAT | TTG | GAC | TGG | TTT | GTT | AAA | ATT | GGG | CATC-- | -GT | AAA | TCG | GCT | CGC | CTA | GTA | CAA | CTT | TGT | ACA | GGT | GAG | TAT | GGG | CAT | AAG | ATC | CCA | ATT | CAT | TAT | GAC | ATT | TTT | GGC | AAT | TAT | ACT | ATT | TCA | TGT | GAA | CCA | CTT | GAA | ATT | AAT | TGT | CAA | AAC | CCA | CCA | GTT | GGA | AGT | CTC | ATC | GTA | CGT | TGT | TCA | TAT | GAT | GTT | GAC | TCT | ATG | GAG | TAT | CAT | GAC | GTT | CAT | GTT | GT---T | CTA | G--AT | TTC | ATC | TAA |
KJ473814_BtRs_BetaCoV_HuB2013 | ATG | AAA | CTT | CTC | ATT | GTT | TTT | GGA | CTC | TTA | ACA | TCA | GTA | TAC | TGC | ATT | CAT | AAA | GAA | TGC | AGC- | ATA | CAA | GAG | TGT | TGT | GAA | ATT | CAA | CCC | TCC | CAA | ATT | GAA | GAC | CCA | TCT | CCA | ATA | CAT | TAC | TAT | TCG | GAC | TGG | TTT | ATA | CAA | ATT | GGA | TAT--- | AGA | AAG | TCA | GCT | CGC | CTT | GTA | CAA | TTG | TGC | GAG | GGA | GAT | TAT | GGC | AAA | AGA | ATT | CCG | ATT | CAT | TAT | GAA | ATG | TTT | GGC | AAT | TAC | AGT | ATG | TAC | TGT | GAA | CCA | CTT | GAG | ATA | AAC | TGT | CAA | GCC | CCA | CCA | GTA | GGT | CGT | TTA | ATT | GTG | CGG | TGG | TTG | CAC | GAT | TAT | GAG | TCT | GCT | GAG | CAT | CAC | GAC | GTT | AGA | GTT | GT---T | CTA | G--AT | TTC | ATA | TAA |
DQ412043_Bat_SARS_CoV_Rm1 | ATG | AAA | CTT | CTC | ATT | GTT | TTT | GGA | CTC | TTA | ACA | TCA | GTA | TAC | TGC | ATT | CAT | AAA | GAA | TGC | AGC- | ATA | CAA | GAG | TGT | TGT | GAA | AAT | CAA | CCC | TAC | CAA | ATT | GAA | GAC | CCA | TGT | CCA | ATA | CAT | TAC | TAT | TCG | GAC | TGG | TTT | ATA | AAA | ATT | GGA | TCT--- | AGA | AAG | TCA | GCT | CGC | CTT | GTA | CAA | TTG | TGC | GAG | GGA | GAT | TAT | GGC | AAA | AGA | ATT | CCG | ATT | CAT | TAT | GAA | ATG | TTT | GGC | AAT | TAC | ACT | ATC | TCT | TGT | GAA | CCC | CTT | GAG | ATA | AAC | TGT | CAA | GCA | CCA | CCA | GTA | GGT | AGT | CTA | ATT | GTG | CGC | TGC | TCG | TAC | GAT | TAT | GAC | TTT | GTT | GAG | CAT | CAT | GAC | GTG | CGT | GTT | GT---T | CTA | G--AT | TTC | ATC | TAA |
KY938558_Bat_CoV_strain_16BO133 | ATG | AAA | CTT | CTC | ATT | --- | -TG | ACT | TGT | ATC | TCT | CT- | --- | TTT | TGC | TGC | TGT | ACA | CAG | CAC | TGTG | GTA | CAG | CGC | TGT | GTA | TCT | AAT | ACA | CCT | TAT | GTT | CTT | G-- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | -GT | AAT | ATTAGG | GGT | AAT | ACT | TAT | AAT | AGT | GCT | AGA | CTT | CGT | GCC | TTA | GGA | AAA | GTT | CTA | TCT | TTT | CAT | ATA | TGG | CAC | ACT | ATG | GTT | CAA | GCA | TGT | ACA | CCT | --- | --- | --- | AAT | GTC | ACC | ATC | AAT | TGT | CAA | GAT | CCA | GTA | GGT | GGT | GCA | CTT | GTA | GCG | AGA | TGT | TGG | TAC | CTT | TAC | GGA | GGT | TCC | CAG | ACC | GCT | ACA | CTT | AGA | GAC | -T---T | GTA | GATCT | GTT | CTT | TAA |
DQ412042_Bat_SARS_CoV_Rf1 | ATG | AAA | TTT | CTC | ATT | GTT | ATG | ACT | TGT | ATA | TCT | C-- | --- | -TT | TGC | TGC | TGT | ATA | C-G | CAC | TGTG | GTA | CAG | CGC | TGT | GCA | TCT | AAT | ACA | CCT | TAT | GTT | CTT | GAA | AAC | CCA | TGT | CCC | ACT | GGT | TAT | CAG | CCA | GAG | TGG | AAC | ATT | AGG | TAT | AAC | ACTAGG | GGT | AAT | ACT | TAT | AAC | AGT | GCT | AGA | CTG | TGT | GCT | TTA | GGA | AAA | GTT | TTA | TCT | TTT | CAT | AGG | TGG | CAC | ACT | ATG | GTT | CAA | GCA | TGT | ACA | CCT | --- | --- | --- | AAT | GTC | ACC | ATC | AAT | TGT | CAA | GAT | CCA | GTA | GGT | GGT | GCA | CTT | GTA | GCG | AGA | TGT | TGG | TAC | TTT | TAC | CAA | GGT | CCC | CAG | ACC | GCT | ACA | TTT | AGA | GAC | ATACAT | GTA | GATCT | GTT | CTT | TAA |
DQ648856_Bat_CoV_BtCoV_273_2005 | ATG | AAA | TTT | CTC | ATT | GTT | ATG | ACT | TGT | ATA | TCT | C-- | --- | -TT | TGC | TGC | TGT | ATA | C-G | CAC | TGTG | GTA | CAG | CGC | TGT | GCA | TCT | AAT | ACA | CCT | TAT | GTT | CTT | GAA | AAC | CCA | TGT | CCC | ACT | GGT | TAT | CAG | CCA | GAG | TGG | AAC | ATT | AGG | TAT | AAC | ACTAGG | GGT | AAT | ACT | TAT | AAC | AGT | GCT | AGA | CTG | TGT | GCT | TTA | GGA | AAA | GTT | TTA | TCT | TTT | CAT | AGG | TGG | CAC | ACT | ATG | GTT | CAA | GCA | TGT | ACA | CCT | --- | --- | --- | AAT | GTC | ACC | ATC | AAT | TGT | CAA | GAT | CCA | GTA | GGT | GGT | GCA | CTT | GTA | GCG | AGA | TGT | TGG | TAC | TTT | TAC | CAA | GGT | TCC | CAG | ACC | GCT | ACA | TTT | AGA | GAC | ATACAT | GTA | GATCT | GTT | CTT | TAA |
KJ473812_BtRf_BetaCoV_HeB2013 | ATG | AAA | CTT | CTC | ATT | GTT | ATG | ACT | TGT | ATC | TCT | C-- | --- | -TT | TGC | TGC | TGT | ATA | C-G | CAC | TGTG | GTA | CAG | CGC | TGT | GTA | TCT | AAT | ACA | CCT | TAT | GTT | CTT | GAA | AAC | CCA | TGT | CCC | ACT | GGT | TAT | CAG | CCA | GAG | TGG | AAC | ATT | AGG | TAT | AAC | ACTAGG | GGT | AAT | ACT | TAT | AAC | ACT | GCT | AGA | CTG | TGT | GCC | TTA | GGA | AAA | GTT | CTA | TCT | TTT | CAT | AGA | TGG | CAC | ACT | ATG | GTT | CAA | GCA | TGT | ACA | CCT | --- | --- | --- | AAT | GTC | ACC | ATC | AAT | TGT | CAA | GAT | CCA | GTA | GGT | GGT | GCA | CTT | GTA | GCG | AGA | TGT | TGG | TAC | TTT | TAC | CGA | GGT | TCC | CAG | ACC | GCT | ACA | TTT | AGA | GAC | ATACAC | GTA | GATCT | GTT | CTT | TAA |
KY770860_Bat_CoV_Jiyuan_84 | ATG | AAA | CTT | CTC | ATT | GTT | ATG | ACT | TGT | ATC | TCT | C-- | --- | -TT | TGC | TGC | TGT | ATA | C-G | CAC | TGTG | GTA | CAG | CGC | TGT | GTA | TCT | AAT | ACA | CCT | TAT | GTT | CTT | GAA | AAC | CCA | TGT | CCC | ACT | GGT | TAT | CAG | CCA | GAG | TGG | AAC | ATT | AGG | TAT | AAC | ACTAGG | GGT | AAT | ACT | TAT | AAC | ACT | GCT | AGA | CTG | TGT | GCC | TTA | GGA | AAA | GTT | CTA | TCT | TTT | CAT | AGA | TGG | CAC | ACT | ATG | GTT | CAA | GCA | TGT | ACA | CCT | --- | --- | --- | AAT | GTC | ACC | ATC | AAT | TGT | CAA | GAT | CCA | GTA | GGT | GGT | GCA | CTT | GTA | GCG | AGA | TGT | TGG | TAC | TTT | CAC | CGA | GGT | TCC | CAG | ACC | GCT | ACA | TTT | AGA | GAC | ATACAC | GTA | GATCT | GTT | CTT | TAA |
JX993987_Bat_CoV_Rp_Shaanxi2011 | ATG | AAA | CTT | CTC | ATT | GTA | TTT | GGA | CTC | TTA | ACT | TCA | GTA | TAC | TGC | ATC | CAT | AAG | GAA | TGC | AGC- | ATA | CAA | GAG | TGT | TGT | GAA | AAT | CAA | CCC | TAC | CAA | ATT | GAA | GAC | CCA | TGT | CCA | ATA | CAT | TAC | TAT | TCG | GAC | TGG | TAT | ATA | AAA | ATT | GGA | GCT--- | AGA | AAG | TCA | GCC | CGC | CTT | GTG | CAA | TTG | TGC | GAG | GGC | GAT | TAT | GGC | AAA | AGG | ATT | CCA | ATT | CAT | TAT | GAA | ATG | TTT | GGC | AAT | TAC | ACT | ATC | TCT | TGC | GAA | CCA | CTT | GAG | ATA | AAC | TGC | CAA | GCA | CCA | CCT | GTA | GGT | AGT | CTA | ATT | GTG | CGT | TGT | TCG | TAC | GAT | TAT | GAC | TTT | GTT | GAG | CAT | CAT | GAC | GTT | CGT | GTT | GT---T | CTA | G--AT | TTC | ATC | TAA |
GQ153542_Bat_SARS_CoV_HKU3_7 | ATG | AAA | CTT | CTC | ATT | GTT | TTT | GGA | CTC | TTA | ACA | TCA | GTG | TAC | TGC | ATC | CAT | AAA | GAA | TGC | AGC- | ATA | CAA | GAG | TGT | TGT | GAA | AAT | CAA | CCC | TAC | CAA | ATT | GAA | GAC | CCA | TGT | CCA | ATA | CAT | TAC | TAT | TCG | GAC | TGG | TTT | ATA | AAA | ATT | GGA | TCT--- | AGA | AAA | TCA | GCT | CGC | CTC | GTA | CAA | TTA | TGT | GAA | GGT | GAT | TAT | GGA | CGA | AGA | ATT | CCA | ATT | TAT | TAT | GAG | ATG | TTT | GGC | AAT | TAC | ACT | ATC | TCT | TGT | GAA | CCA | CTA | GAG | ATA | AAT | TGT | CAG | GCG | CCA | CCA | GTG | GGT | AGT | CTA | ATC | GTT | CGT | TGT | TCA | TAC | GAT | TAC | GAC | TTT | GTT | GAG | CAT | CAT | GAC | GTT | CGT | GTT | GT---T | CTA | G--AT | TTC | ATC | TAA |
DQ022305_Bat_SARS_CoV_HKU3_1 | ATG | AAA | CTT | CTC | ATT | GTT | TTT | GGA | CTC | TTA | GCA | TCA | GTG | TAC | TGC | TTC | CAC | AGA | GAA | TGC | AGC- | ATA | CAA | GAG | TGT | TGT | GAA | AAT | CAA | CCC | TAC | CAA | ATT | GAA | GAC | CCA | TGT | CCA | ATA | CAT | TAC | TAT | TCG | GAC | TGG | TTT | ATA | AAA | ATT | GGA | TCT--- | AGA | AAA | TCG | GCT | CGC | CTC | GTA | CAA | TTG | TGC | GAA | GGT | GAT | TAC | GGA | CGA | AGA | ATT | CCA | ATT | CAT | TAT | GAG | ATG | TTT | GGC | AAT | TAC | ACT | ATC | TCC | TGT | GAA | CCA | CTA | GAG | ATA | AAT | TGT | CAG | GCT | CCA | CCA | GTA | GGT | AGT | CTA | ATC | GTT | CGT | TGT | TCA | TAC | GAT | TAT | GAC | TTT | GTT | GAG | CAT | CAT | GAC | GTT | CGT | GTT | GT---T | CTA | G--AT | TTC | ATC | TAA |
GQ153547_Bat_SARS_CoV_HKU3_12 | ATG | AAA | CTT | CTC | ATT | GTT | TTT | GGA | CTC | TTA | GCA | TCA | GTG | TAC | TGC | TTC | CAC | AGA | GAA | TGC | AGC- | ATA | CAA | GAG | TGT | TGT | GAA | AAT | CAA | CCC | TAC | CAA | ATT | GAA | GAC | CCA | TGT | CCA | ATA | CAT | TAC | TAT | TCG | GAC | TGG | TTT | ATA | AAA | ATT | GGA | TCT--- | AGA | AAA | TCG | GCT | CGC | CTC | GTA | CAA | TTG | TGC | GAA | GGT | GAT | TAC | GGA | CGA | AGA | ATT | CCA | ATT | CAT | TAT | GAG | ATG | TTT | GGC | AAT | TAC | ACT | ATC | TCC | TGT | GAA | CCA | CTA | GAG | ATA | AAT | TGT | CAG | GCT | CCA | CCA | GTA | GGT | AGT | CTA | ATC | GTT | CGT | TGT | TCA | TAC | GAT | TAT | GAC | TTT | GTT | GAG | CAT | CAT | GAC | GTT | CGT | GTT | GT---A | CTA | G--AT | TTC | ATC | TAA |
KY352407_SARS_related_CoV_strain_BtKY72 | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | ---- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | ------ | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | ------ | --- | ----- | --- | --- | --- |
NC_014470_Bat_CoV_BM48_31_BGR_2008 | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | ---- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | ------ | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | ------ | --- | ----- | --- | --- | --- |
ORF8_protein