NC_045512_SARS_CoV_2_Wuhan_Hu_1_aa | M | K | I | I | L | F | L | A | L | I | T | L | A | T | C | E | L | Y | H | Y | Q | E | C | V | R | G | T | T | V | L | L | K | E | P | C | S | S | G | T | Y | E | G | N | S | P | F | H | P | L | A | D | N | K | F | A | L | T | C | F | S | T | Q | F | A | F | A | C | P | D | G | V | K | H | V | Y | Q | L | R | A | R | S | V | S | P | K | L | F | I | R | Q | E | E | V | Q | E | L | Y | S | P | I | F | L | I | V | A | A | I | V | F | I | T | L | C | F | T | L | K | R | K | T | E | * |
NC_045512_SARS_CoV_2_Wuhan_Hu_1 | ATG | AAA | ATT | ATT | CTT | TTC | TTG | GCA | CTG | ATA | ACA | CTC | GCT | ACT | TGT | GAG | CTT | TAT | CAC | TAC | CAA | GAG | TGT | GTT | AGA | GGT | ACA | ACA | GTA | CTT | TTA | AAA | GAA | CCT | TGC | TCT | TCT | GGA | ACA | TAC | GAG | GGC | AAT | TCA | CCA | TTT | CAT | CCT | CTA | GCT | GAT | AAC | AAA | TTT | GCA | CTG | ACT | TGC | TTT | AGC | ACT | CAA | TTT | GCT | TTT | GCT | TGT | CCT | GAC | GGC | GTA | AAA | CAC | GTC | TAT | CAG | TTA | CGT | GCC | AGA | TCA | GTT | TCA | CCT | AAA | CTG | TTC | ATC | AGA | CAA | GAG | GAA | GTT--- | CAA | GAA | CTT | TAC | TCT | CCA | ATT | TTT | CTT | ATT | GTT | GCG | GCA | ATA | GTG | TTT | ATA | ACA | CTT | TGC | TTC | ACA | CTC | AAA | AGA | AAG | ACA | GAA | TGA |
MN996532_Bat_CoV_RaTG13 | ATG | AAA | ATT | ATT | CTT | TTC | TTG | GTA | CTG | GTA | ACA | CTT | GCT | ACT | TGT | GAG | CTT | TAT | CAC | TAC | CAA | GAG | TGT | GTT | AGA | GGT | ACA | ACA | GTA | CTT | CTA | AAA | GAA | CCT | TGC | TCT | TCT | GGA | ACG | TAT | GAA | GGC | AAT | TCA | CCA | TTC | CAT | CCT | CTA | GCT | GAT | AAT | AAA | TTT | GCA | CTG | ACT | TGC | TTT | AGC | ACT | CAA | TTT | GCT | TTT | GCT | TGT | CCT | GAC | GGC | GTG | AAA | CAC | GTC | TAT | CAG | TTA | CGT | GCC | AGA | TCA | GTT | TCA | CCC | AAA | CTG | TTC | ATC | AGA | CAA | GAG | GAA | GTT--- | CAA | GAA | CTT | TAC | TCA | CCA | ATT | TTT | CTT | ATC | ATT | GCA | GCA | ATA | GTG | TTT | ATA | ACA | CTT | TGC | TTC | ACA | CTC | AAA | AGA | AAA | ACA | GAA | TGA |
MG772933_Bat_SARS_like_CoV_bat_SL_CoVZC45 | ATG | AAA | ATT | ATT | TTC | TTC | TTG | GTA | CTG | ATA | ACA | CTT | GTT | ACT | GGC | GAG | CTT | TAC | CAC | TAC | CAA | GAG | TGT | ATA | AAA | GGT | ACA | ACT | GTA | CTT | TTA | AAA | GAA | CCT | TGC | TCT | TCA | GGA | ACA | TAT | GAA | GGC | AAT | TCA | CCA | TTT | CAT | CCT | CTA | GCT | GAT | AAT | AAA | TTT | GCA | CTG | GCT | TGC | TTT | AGC | ACT | CAA | TTT | GCT | TTT | GCT | TGT | CCT | GAC | GGT | GTT | AGA | CAC | ACC | TTT | CAG | TTA | CGT | GCG | AGA | TCA | GTT | TCA | CCC | AAA | CTG | TTT | ACC | AGA | CAA | GAG | GAA | GTT--- | CAA | GAA | TTA | TAC | TCA | CCT | GTT | TTC | CTT | ATC | GTT | GCA | GCT | ATA | GTG | TTC | ATA | ATA | CTT | TGC | TTC | ACA | TTC | AAA | AGA | AAA | ATA | GAA | TGA |
MG772934_Bat_SARS_like_CoV_bat_SL_CoVZXC21 | ATG | AAA | ATT | ATT | TTC | TTC | TTG | GTA | CTG | ATA | ACA | CTT | GTT | ACT | GGC | GAG | CTT | TAC | CAC | TAC | CAA | GAG | TGT | ATA | AAA | GGT | ACA | ACT | GTA | CTT | TTA | AAA | GAA | CCT | TGC | TCT | TCA | GGA | ACA | TAT | GAA | GGC | AAT | TCA | CCA | TTT | CAT | CCT | CTA | GCT | GAT | AAT | AAA | TTT | GCA | CTG | ACT | TGC | TTT | AGC | ACT | CAA | TTT | GCT | TTT | GCT | TGT | CCT | GAC | GGT | GTT | AGA | CAC | ACC | TTT | CAG | TTA | CGT | GCG | AGA | TCA | GTT | TCA | CCC | AAA | CTG | TTT | ACC | AGA | CAA | GAG | GAA | GTT--- | CAA | GAA | TTA | TAC | TCA | CCT | GTT | TTC | CTT | ATC | GTT | GCA | GCT | ATA | GTG | TTC | ATA | ATA | CTT | TGC | TTC | ACA | TTC | AAA | AGA | AAA | ATA | GAA | TGA |
NC_004718_SARS_CoV | ATG | AAA | ATT | ATT | CTC | TTC | CTG | ACA | TTG | ATT | GTA | TTT | ACA | TCT | TGC | GAG | CTA | TAT | CAC | TAT | CAG | GAG | TGT | GTT | AGA | GGT | ACG | ACT | GTA | CTA | CTA | AAA | GAA | CCT | TGC | CCA | TCA | GGA | ACA | TAC | GAG | GGC | AAT | TCA | CCA | TTT | CAC | CCT | CTT | GCT | GAC | AAT | AAA | TTT | GCA | CTA | ACT | TGC | ACT | AGC | ACA | CAC | TTT | GCT | TTT | GCT | TGT | GCT | GAC | GGT | ACT | CGA | CAT | ACC | TAT | CAG | CTG | CGT | GCA | AGA | TCA | GTT | TCA | CCA | AAA | CTT | TTC | ATC | AGA | CAA | GAG | GAG | GTTCAA | CAA | GAG | CTC | TAC | TCG | CCA | CTT | TTT | CTC | ATT | GTT | GCT | GCT | CTA | GTA | TTT | TTA | ATA | CTT | TGC | TTC | ACC | ATT | AAG | AGA | AAG | ACA | GAA | TGA |
KT444582_SARS_like_CoV_WIV16 | ATG | AAA | ATT | ATT | CTC | TTC | CTG | ACA | TTG | ATT | GCA | CTT | GCA | TCT | TGC | GAG | CTA | TAT | CAC | TAT | CAG | GAG | TGT | GTT | AGA | GGT | ACA | ACT | GTA | CTA | CTA | AAA | GAA | CCT | TGC | CTG | TCT | GGA | ACT | TAC | GAG | GGC | AAT | TCA | CCA | TTT | CAT | CCT | CTT | GCT | GAT | AAC | AAA | TTT | GCA | CTA | ACT | TGC | ACT | AGC | ACT | CAT | TTT | GCT | TTT | GCT | TGT | GCT | GAC | GGT | ACT | AGA | CAT | ACC | TAT | CAG | CTT | CGT | GCA | AGA | TCA | GTT | TCA | CCA | AAA | CTT | TTC | ATC | AGA | CAA | GAG | GAA | GTTCAC | CAG | GAG | CTC | TAC | TCA | CCG | CTT | TTT | CTC | ATT | GTT | GCT | GCT | CTA | GTA | TTT | ATA | ATA | CTT | TGC | TTC | ACC | ATT | AAG | AGA | AAG | ACA | GAA | TGA |
KY417146_Bat_SARS_like_CoV_Rs4231 | ATG | AAA | ATT | ATT | CTC | TTC | CTG | ACA | TTG | ATT | GCA | CTT | GCA | TCT | TGC | GAG | CTA | TAT | CAC | TAT | CAG | GAG | TGT | GTT | AGA | GGT | ACA | ACT | GTA | CTA | CTA | AAA | GAA | CCT | TGC | CCA | TCT | GGA | ACC | TAC | GAG | GGC | AAT | TCA | CCA | TTT | CAT | CCT | CTT | GCT | GAT | AAC | AAA | TTT | GCA | CTA | ACT | TGC | ACT | AGC | ACC | CAC | TTT | GCT | TTT | GCT | TGT | GCT | GAC | GGT | ACT | AGA | CAT | ACC | TAT | CAG | CTT | CGT | GCA | AGA | TCA | GTT | TCA | CCA | AAA | CTT | TTC | ATC | AGA | CAA | GAG | GAA | GTTCAC | CAG | GAG | CTC | TAC | TCA | CCG | CTT | TTT | CTC | ATT | GTT | GCT | GCT | CTA | GTA | TTT | ATA | ATA | CTT | TGC | TTC | ACC | ATT | AAG | AGA | AAG | ACA | GAA | TGA |
MK211376_CoV_BtRs_BetaCoV_YN2018B | ATG | AAA | ATT | ATT | CTC | TTC | CTG | ACA | TTG | ATT | GCA | CTT | GCA | TCT | TGC | GAG | CTA | TAT | CAC | TAT | CAG | GAG | TGT | GTT | AGA | GGT | ACA | ACT | ATA | CTA | CTA | AAA | GAA | CCT | TGC | CTA | TCT | GGA | ACT | TAC | GAG | GGC | AAT | TCA | CCA | TTT | CAT | CCT | CTT | GCT | GAT | AAC | AAA | TTT | GCA | CTA | ACT | TGC | ACT | AGC | ACT | CAT | TTT | GCT | TTT | GCT | TGT | GCT | GAC | GGT | ACT | AGA | CAT | ACT | TAT | CAG | CTT | CGT | GCA | AGA | TCA | GTT | TCA | CCA | AAA | CTT | TTC | ATC | AGA | CAA | GAG | GAA | GTTCAT | CAA | GAG | CTC | TAC | TCG | CCG | CTT | TTT | CTC | ATT | GTT | GCT | GCT | CTA | GTA | TTT | ATA | ATA | CTT | TGC | TTC | ACC | ATT | AAG | AGA | AAG | ACA | GAA | TGA |
KY417151_Bat_SARS_like_CoV_Rs7327 | ATG | AAA | ATT | ATT | CTC | TTC | CTG | ACA | TTG | ATT | GCA | CTT | GCA | TCT | TGC | GAG | CTA | TAT | CAC | TAT | CAG | GAG | TGT | GTT | AGA | GGT | ACA | ACT | GTA | CTA | CTA | AAA | GAA | CCT | TGC | CCA | TCT | GGA | ACT | TAC | GAG | GGC | AAT | TCA | CCA | TTT | CAT | CCT | CTT | GCC | GAT | AAC | AAA | TTT | GCA | CTA | ACT | TGC | ACT | AGC | ACT | CGC | TTT | GCT | TTT | GCT | TGT | GCT | GAC | GGT | ACT | AGA | CAT | ACC | TAT | CAG | CTT | CGT | GCA | AGA | TCA | GTT | TCG | CCA | AAA | CTT | TTC | ATC | AGA | CAA | GAG | GAA | GTTCAC | CAA | GAG | CTC | TAC | TCA | CCG | CTT | TTT | CTC | ATT | GTT | GCT | GCT | CTA | GTA | TTT | ATA | ATA | CTT | TGC | TTC | ACC | ATT | AAG | AGA | AAG | ACA | GAA | TGA |
KY417152_Bat_SARS_like_CoV_Rs9401 | ATG | AAA | ATT | ATT | CTC | TTC | CTG | ACA | TTG | ATT | GCA | CTT | GCA | TCT | TGC | GAG | CTA | TAT | CAC | TAT | CAG | GAG | TGT | GTT | AGA | GGT | ACA | ACT | GTA | CTA | CTA | GAA | GAA | CCT | TGC | CCA | TCT | GGA | ACC | TAC | GAG | GGC | AAT | TCA | CCA | TTT | CAT | CCT | CTT | GCT | GAT | AAC | AAA | TTT | GCA | CTA | ACT | TGC | ACT | AGC | ACC | CAC | TTT | GCT | TTT | GCT | TGT | GCT | GAC | GGT | ACT | AGA | CAT | ACC | TAT | CAG | CTT | CGT | GCA | AGA | TCA | GTT | TCA | CCA | AAA | CTT | TTC | ATC | AGA | CAA | GAG | GAA | GTTCAC | CAG | GAG | CTC | TAC | TCA | CCG | CTT | TTT | CTC | ATT | GTT | GCT | GCT | CTA | GTA | TTT | ATA | ATA | CTT | TGC | TTC | ACC | ATT | AAG | AGA | AAG | ACA | GAA | TGA |
KY417144_Bat_SARS_like_CoV_Rs4084 | ATG | AAA | ATT | ATT | CTC | TTC | CTG | ACA | TTG | ATT | GCA | CTT | GCA | TCT | TGC | GAG | CTA | TAT | CAC | TAT | CAG | GAG | TGT | GTT | AGA | GGT | ACA | ACT | GTA | CTA | CTA | AAA | GAA | CCT | TGC | CCA | TCT | GGA | ACC | TAC | GAG | GGC | AAT | TCA | CCA | TTT | CAT | CCT | CTT | GCT | GAT | AAC | AAA | TTT | GCA | CTA | ACT | TGC | ACT | AGC | ACC | CAC | TTT | GCT | TTT | GCT | TGT | GCT | GAC | GGT | ACT | AGA | CAT | ACC | TAT | CAG | CTT | CGT | GCA | AGA | TCA | GTT | TCA | CCA | AAA | CTT | TTC | ATC | AGA | CAA | GAG | GAA | GTTCAC | CAG | GAG | CTC | TAC | TCA | CCG | CTT | TTT | CTC | ATT | GTT | GCT | GCT | CTA | GTA | TTT | ATA | ATA | CTT | TGC | TTC | ACC | ATT | AAG | AGA | AAG | ACA | GAA | TGA |
KF367457_Bat_SARS_like_CoV_WIV1 | ATG | AAA | ATT | ATT | CTC | TTC | CTG | ACA | TTG | ATT | GCA | CTT | GCA | TCT | TGC | GAG | CTA | TAT | CAC | TAT | CAG | GAG | TGT | GTT | AGA | GGT | ACA | ACT | GTA | CTA | CTA | AAA | GAA | CCT | TGC | CTA | TCT | GGA | ACT | TAC | GAG | GGC | AAT | TCA | CCA | TTT | CAT | CCT | CTT | GCT | GAT | AAC | AAA | TTT | GCA | CTA | ACT | TGC | ACT | AGC | ACT | CAT | TTT | GCT | TTT | GCT | TGT | GCT | GAC | GGT | ACT | AGA | CAT | ACT | TAT | CAG | CTT | CGT | GCA | AGA | TCA | GTT | TCA | CCA | AAA | CTT | TTC | ATC | AGA | CAA | GAG | GAA | GTTCAT | CAA | GAG | CTC | TAC | TCG | CCG | CTT | TTT | CTC | ATT | GTT | GCT | GCT | CTA | GTA | TTT | ATA | ATA | CTT | TGC | TTC | ACC | ATT | AAG | AGA | AAG | ACA | GAA | TGA |
KU973692_UNVERIFIED_SARS_related_CoV_F46 | ATG | AAA | ATT | ATT | CTC | TTC | CTG | ACA | TTG | ATT | GTA | CTT | GCA | TCT | TGC | GAG | TTA | TAT | CAT | TAT | CAG | GAG | TGT | GTT | AGA | GGT | ACA | ACT | GTA | CTA | CTA | AAG | GAA | CCT | TGC | CCA | TCT | GGA | ACA | TAC | GAG | GGC | AAT | TCA | CCA | TTT | CAT | CCT | CTT | GCT | GAC | AAC | AAA | TTT | GCA | CTA | ACT | TGC | ATT | AGC | ACA | CAT | TTT | GCC | TTT | GCT | TGT | GCT | GAC | GGT | ACT | AAA | CAC | ACC | TAT | CAG | CTT | CGT | GCA | AGA | TCA | GTT | TCA | CCA | AAA | CTT | TTC | ATC | AGA | CAA | GAG | GAG | GTTCAG | CAA | GAG | CTC | TAC | TCA | CCA | CTT | TTT | CTC | ATT | GTT | GCT | GCT | CTA | GTA | TTT | TTA | ATA | CTT | TGC | TTC | ACC | ATT | AAG | AGA | AAA | ACA | GAA | TGA |
KY417145_Bat_SARS_like_CoV_Rf4092 | ATG | AAA | ATT | ATT | CTC | TTC | CTG | ACA | TTG | ATT | GCA | CTT | GCA | TCT | TGC | GAG | CTA | TAT | CAC | TAT | CAG | GAG | TGT | GTT | AGA | GGT | ACA | ACT | GTA | CTA | CTA | AAA | GAA | CCT | TGC | CCA | TCT | GGA | ACC | TAC | GAG | GGC | AAT | TCA | CCA | TTT | CAT | CCT | CTT | GCT | GAT | AAC | AAA | TTT | GCA | CTA | ACT | TGC | ACT | AGC | ACC | CAC | TTT | GCT | TTT | GCT | TGT | GCT | GAC | GGT | ACT | AGA | CAT | ACC | TAT | CAG | CTT | CGT | GCA | AGA | TCA | GTT | TCA | CCA | AAA | CTT | TTC | ATC | AGA | CAA | GAG | GAA | GTTCAC | CAG | GAG | CTC | TAC | TCA | CCG | CTT | TTT | CTC | ATT | GTT | GCT | GCT | CTA | GTA | TTT | ATA | ATA | CTT | TGC | TTC | ACC | ATT | AAG | AGA | AAG | ACA | GAA | TGA |
KJ473816_BtRs_BetaCoV_YN2013 | ATG | AAA | ATT | ATT | CTC | TTC | CTG | ACA | TTG | ATT | GCA | CTT | GCA | TCT | TGC | GAG | CTA | TAT | CAT | TAT | CAG | GAG | TGT | GTT | AGA | GGT | ACA | ACT | GTA | CTA | CTA | AAA | GAA | CCT | TGC | CCA | TCT | GGA | ACC | TAC | GAG | GGC | AAT | TCA | CCA | TTT | CAT | CCT | CTT | GCC | GAT | AAC | AAA | TTT | GCA | CTA | ACT | TGC | ACT | AGC | ACT | CGC | TTT | GCT | TTT | GCT | TGT | GCT | GAC | GGT | ACT | AGA | CAT | ACT | TAT | CAG | CTT | CGT | GCG | AGA | TCA | GTT | TCA | CCA | AAA | CTT | TTC | ATC | AGA | CAA | GAG | GAA | GTTCAC | CAA | GAG | CTC | TAC | TCA | CCG | CTT | TTT | CTC | ATT | GTT | GCT | GCT | ATA | GTA | TTT | ATA | ATA | CTT | TGC | TTC | ACC | ATT | AAG | AGA | AAG | ACA | GAA | TGA |
KY770858_Bat_CoV_Anlong_103 | ATG | AAA | ATT | ATT | CTC | TTC | CTG | ACA | TTG | ATT | GCA | CTT | GCA | TCT | TGC | GAG | CTA | TAT | CAC | TAC | CAG | GAG | TGT | GTT | AGA | GGT | ACA | ACT | GTA | CTA | CTA | AAA | GAA | CCT | TGC | CCA | TCT | GGA | ACT | TAC | GAG | GGC | AAT | TCA | CCA | TTT | CAT | CCT | CTT | GCT | GAT | AAC | AAA | TTT | GCA | CTA | ACT | TGC | ACT | AGC | ACT | CAC | TTT | GCT | TTT | GCT | TGC | GCT | GAC | GGT | ACT | AGA | CAT | ACC | TAT | CAG | CTT | CGT | GCA | AGA | TCA | GTT | TCA | CCA | AAA | CTT | TTC | ATC | AGA | CAA | GAG | GCA | GTTCAC | CAA | GAG | CTC | TAC | TCT | CCG | CTT | TTT | CTC | ATT | GTT | GCT | GCT | CTA | GTA | TTT | ATA | ATA | CTT | TGC | TTC | ACC | ATT | AAG | AGA | AAG | ACA | GAA | TGA |
KY417143_Bat_SARS_like_CoV_Rs4081 | ATG | AAA | ATT | ATT | CTC | TTC | CTG | ACT | TTG | ATT | GCA | CTT | GCA | TCT | TGC | GAG | CTA | TAT | CAC | TAT | CAG | GAG | TGT | GTT | AGA | GGT | ACA | ACT | GTA | CTA | CTA | AAA | GAA | CCT | TGC | CCA | TCT | GGA | ACT | TAC | GAG | GGC | AAT | TCA | CCA | TTT | CAT | CCT | CTT | GCC | GAT | AAT | AAA | TTT | GCA | CTA | ACT | TGC | ACT | AGC | ACT | CAT | TTT | GCT | TTT | GCT | TGT | GCT | GAC | GGT | ACT | AGA | CAT | ACC | TAT | CAG | CTT | CGT | GCA | AGA | TCA | GTT | TCA | CCA | AAA | CTT | TTC | ATC | AGA | CAA | GAG | GAA | GTTCAC | CAA | GAG | CTC | TAC | TCA | CCG | CTT | TTT | CTC | ATT | GTT | GCT | GCT | CTA | GTA | TTT | ATA | ATA | CTT | TGT | TTC | ACC | ATT | AAG | AGA | AAG | ACA | GAA | TGA |
KY417149_Bat_SARS_like_CoV_Rs4255 | ATG | AAA | ATT | ATT | CTC | TTC | CTG | ACT | TTG | ATT | GCA | CTT | GCA | TCT | TGC | GAG | CTA | TAT | CAC | TAT | CAG | GAG | TGT | GTT | AGA | GGT | ACA | ACT | GTA | CTA | CTA | AAA | GAA | CCT | TGC | CCA | TCT | GGA | ACT | TAC | GAG | GGC | AAT | TCA | CCA | TTT | CAT | CCT | CTT | GCC | GAT | AAT | AAA | TTT | GCA | CTA | ACT | TGC | ACT | AGC | ACT | CAT | TTT | GCT | TTT | GCT | TGT | GCT | GAC | GGT | ACT | AGA | CAC | ACC | TAT | CAG | CTT | CGT | GCA | AGA | TCA | GTT | TCA | CCA | AAA | CTT | TTC | ATC | AGA | CAA | GAG | GAA | GTTCAC | CAA | GAG | CTC | TAC | TCA | CCG | CTT | TTT | CTC | ATT | GTT | GCT | GCT | CTA | GTA | TTT | ATA | ATA | CTT | TGC | TTC | ACC | ATT | AAG | AGA | AAG | ACA | GAA | TGA |
MK211378_CoV_BtRs_BetaCoV_YN2018D | ATG | AAA | ATT | ATT | CTC | TTC | CTG | ACA | TTG | ATT | GCA | CTT | GCA | TCT | TGC | GAG | CTA | TAT | CAC | TAT | CAG | GAG | TGT | GTT | AGA | GGT | ACA | ACT | ATA | CTA | CTA | AAA | GAA | CCT | TGC | CTA | TCT | GGA | ACT | TAC | GAG | GGC | AAT | TCA | CCA | TTT | CAT | CCT | CTT | GCT | GAT | AAC | AAA | TTT | GCA | CTA | ACT | TGC | ACT | AGC | ACC | CAC | TTT | GCT | TTT | GCT | TGT | GCT | GAC | GGT | ACT | AGA | CAT | ACC | TAT | CAG | CTT | CGT | GCA | AGA | TCA | GTT | TCA | CCA | AAA | CTT | TTC | ATC | AGA | CAA | GAG | GAA | GTTCAC | CAA | GAG | CTC | TAC | TCA | CCG | CTT | TTT | CTC | ATT | GTT | GCT | GCT | CTA | GTA | TTT | ATA | ATA | CTT | TGC | TTC | ACC | ATT | AAG | AGA | AAG | ACA | GAA | TGA |
FJ588686_Bat_SARS_CoV_Rs672_2006 | ATG | AAA | ATT | ATT | CTC | TTC | CTG | ACA | TTG | ATT | GCA | CTT | GCA | TCT | TGC | GAG | CTA | TAT | CAT | TAT | CAG | GAG | TGT | GTT | AGA | GGT | ACA | ACT | GTA | CTA | CTA | AAA | GAA | CCT | TGC | CCA | TCT | GGA | ACT | TAT | GAG | GGC | AAT | TCA | CCA | TTT | CAT | CCT | CTT | GCT | GAT | AAC | AAA | TTT | GCA | CTA | ACT | TGC | ACT | AGC | ACT | CAT | TTT | GCT | TTT | GCT | TGT | GCT | GAC | GGT | ACT | AGA | CAT | ACC | TAC | CAG | CTT | CGT | GCA | AGA | TCA | GTT | TCA | CCA | AAA | CTT | TTC | ATC | AGA | CAA | GAG | GAA | GTTCAT | CAA | GAG | CTC | TAC | TCA | CCG | CTT | TTT | CTC | ATT | GTT | GCT | GCT | CTA | GTA | TTT | ATA | ATA | CTT | TGC | TTC | ACC | ATT | AAG | AGA | AAG | ACA | GAA | TGA |
MK211377_CoV_BtRs_BetaCoV_YN2018C | ATG | AAA | ATT | ATT | CTC | TTC | CTG | ACA | TTG | ATT | GCA | CTT | GCA | TCT | TGC | GAG | CTA | TAT | CAC | TAT | CAG | GAG | TGT | GTT | AGA | GGT | ACA | ACT | GTA | CTA | CTA | AAA | GAA | CCT | TGC | CCA | TCT | GGA | ACC | TAC | GAG | GGC | AAT | TCA | CCA | TTT | CAT | CCT | CTT | GCT | GAT | AAC | AAA | TTT | GCA | CTA | ACT | TGC | ACT | AGC | ACC | CAC | TTT | GCT | TTT | GCT | TGT | GCT | GAC | GGT | ACT | AGA | CAT | ACC | TAT | CAG | CTT | CGT | GCA | AGA | TCA | GTT | TCA | CCA | AAA | CTT | TTC | ATC | AGA | CAA | GAG | GAA | GTTCAT | CAG | GAG | CTC | TAC | TCA | CCG | CTT | TTT | CTC | ATT | GTT | GCT | GCT | CTA | GTA | TTT | ATA | ATA | CTT | TGC | TTC | ACC | ATT | AAG | ATA | AAG | ACA | GAA | TGA |
KY417142_Bat_SARS_like_CoV_As6526 | ATG | AAA | ATT | ATT | CTC | TTC | CTG | ACT | TTG | ATT | GCA | CTT | GCA | TCT | TGC | GAG | CTA | TAT | CAC | TAT | CAG | GAG | TGT | GTT | AGA | GGT | ACA | ACT | GTA | CTA | CTA | AAA | GAA | CCT | TGC | CCA | TCT | GGA | ACT | TAC | GAG | GGC | AAT | TCA | CCA | TTT | CAT | CCT | CTT | GCC | GAT | AAT | AAA | TTT | GCA | CTA | ACT | TGC | ACT | AGC | ACT | CAT | TTT | GCT | TTT | GCT | TGT | GCT | GAC | GGT | ACT | AGA | CAT | ACC | TAT | CAG | CTT | CGT | GCA | AGA | TCA | GTT | TCA | CCA | AAA | CTT | TTC | ATC | AGA | CAA | GAG | GAA | GTTCAC | CAA | GAG | CTC | TAC | TCA | CCG | CTT | TTT | CTC | ATT | GTT | GCT | GCT | CTA | GTA | TTT | ATA | ATA | CTT | TGC | TTC | ACC | ATT | AAG | AGA | AAG | ACA | GAA | TGA |
KY417147_Bat_SARS_like_CoV_Rs4237 | ATG | AAA | ATT | ATT | CTC | TTC | CTG | ACA | TTG | ATT | GCA | CTT | GCA | TCC | TGC | GAG | CTA | TAT | CAC | TAT | CAG | GAG | TGT | GTT | AGA | GGT | ACA | ACT | GTA | CTA | CTA | AAA | GAA | CCT | TGC | CCA | TCT | GGA | ACT | TAC | GAG | GGC | AAT | TCA | CCA | TTT | CAT | CCT | CTT | GCT | GAT | AAC | AAA | TTT | GCA | CTA | ACT | TGC | ACT | AGC | ACT | CAT | TTT | GCT | TTT | GCT | TGT | GCT | GAC | GGT | ACT | AGA | CAT | ACT | TAT | CAG | CTT | CGT | GCA | AGA | TCA | GTT | TCA | CCA | AAA | CTT | TTC | ATC | AGA | CAA | GAG | GAA | GTTCAT | CAA | GAG | CTC | TAC | TCG | CCG | CTT | TTT | CTC | ATT | GTT | GCT | GCT | CTA | GTA | TTT | ATA | ATA | CTT | TGC | TTC | ACC | ATT | AAG | AGA | AAG | ACA | GAA | TGA |
KY417148_Bat_SARS_like_CoV_Rs4247 | ATG | AAA | ATT | ATT | CTC | TTC | CTG | ACA | TTG | ATT | GCA | CTT | GCA | TCT | TGC | GAG | CTA | TAT | CAC | TAT | CAG | GAG | TGT | GTT | AGA | GGT | ACA | ACT | GTA | CTA | CTA | AAA | GAA | CCT | TGC | CCA | TCT | GGA | ACT | TAC | GAG | GGC | AAT | TCA | CCA | TTT | CAT | CCT | CTT | GCC | GAT | AAC | AAA | TTT | GCA | CTA | ACT | TGC | ACT | AGC | ACC | CAC | TTT | GCT | TTT | GCT | TGT | GCT | GAC | GGT | ACT | AGA | CAT | ACC | TAT | CAG | CTT | CGT | GCA | AGA | TCA | GTT | TCA | CCA | AAA | CTT | TTC | ATC | AGA | CAA | GAG | GAA | GTTCAC | CAA | GAG | CTC | TAC | TCA | CCG | CTT | TTT | CTC | ATT | GTT | GCT | GTT | CTA | GTA | TTT | ATA | ATA | CTT | TGC | TTC | ACC | ATT | AAG | AGA | AAG | ACA | GAA | TGA |
MK211375_CoV_BtRs_BetaCoV_YN2018A | ATG | AAA | ATT | ATT | CTC | TTC | CTG | ACA | TTG | ATT | GTA | CTT | GCA | TCT | TGC | GAG | CTA | TAT | CAC | TAT | CAG | GAG | TGT | GTT | AGA | GGT | ACA | ACT | GTA | CTA | CTA | AAA | GAA | CCT | TGC | CCA | TCT | GGA | ACT | TAC | GAG | GGC | AAT | TCA | CCA | TTT | CAT | CCT | CTT | GCT | GAT | AAT | AAA | TTT | GCA | CTA | ACT | TGC | ACT | AGC | ACT | CGC | TTT | GCT | TTT | GCT | TGT | GCT | GAC | GGT | ACT | AGA | CAT | ACC | TAT | CAG | CTT | CGT | GCA | AGA | TCA | GTT | TCA | CCA | AAA | CTT | TTC | ATC | AGA | CAA | GAG | GAA | GTTCAC | CAA | GAG | CTC | TAC | TCA | CCG | CTT | TTT | CTC | ATT | GTT | GCT | GCT | TTA | GTA | TTT | ATA | ATA | CTT | TGC | TTC | ACC | ATT | AAG | AGA | AAG | ACA | GAA | TGA |
DQ071615_Bat_SARS_CoV_Rp3 | ATG | AAA | ATT | ATC | CTC | TTC | CTG | ACA | TTG | ATT | GCA | CTT | GCA | TCC | TGC | GAG | CTA | TAT | CAT | TAT | CAG | GAG | TGT | GTT | AGA | GGT | ACA | ACT | GTA | CTA | CTT | AAA | GAA | CCT | TGC | CCA | TCT | GGA | ACT | TAC | GAG | GGC | AAT | TCA | CCA | TTT | CAT | CCT | CTT | GCT | GAC | AAC | AAA | TTT | GCA | CTA | ACT | TGC | ACT | AGC | ACT | CAC | TTT | GCT | TTT | GCT | TGT | GCT | GAC | GGT | ACT | AGA | CAT | ACT | TAT | CAG | CTC | CGT | GCA | AGA | TCA | GTT | TCA | CCA | AAA | CTT | TTC | ATC | AGA | CAA | GAG | GAA | GTTCAC | CAA | GAG | CTC | TAT | TCA | CCG | CTT | TTT | CTC | ATT | GTT | GCT | GCT | CTA | GTA | TTT | ATA | ACA | CTT | TGC | TTC | ACC | ATT | AAG | AGA | AAG | ACA | GAA | TGA |
KP886808_Bat_SARS_like_CoV_YNLF_31C | ATG | AAA | ATT | ATT | CTC | TTC | TTG | ACA | TTG | ATT | GTA | CTT | GCA | ACT | TGC | GAG | TTA | TAT | CAC | TAT | CAG | GAG | TGT | GTT | AGA | GGT | ACT | ACT | GTA | CTA | TTA | GAA | GAA | CCT | TGC | CCG | TCA | GGA | ACA | TAC | GAG | GGC | AAC | TCA | CCA | TTT | CAC | CCT | CTT | GCT | GAC | AAT | AAA | TTT | GCA | CTA | ACT | TGC | ACT | AGC | ACA | CAC | TTT | GCT | TTT | GCT | TGT | GCT | GAC | GGT | ACC | CGA | CAT | ACC | TAT | CAG | CTG | CGT | GCA | AGA | TCA | GTT | TCA | CCA | AAA | CTT | TTC | ATC | AGA | CAA | GAG | GAG | GTTCAA | CAG | GAG | CTC | TAC | TCG | CCA | CTT | TTT | CTC | ATT | GTT | GCT | GCT | CTA | GTA | TTT | TTA | ATA | CTT | TGC | TTC | ACC | ATT | AAG | AGA | AAG | ACA | GAA | TGA |
KJ473815_BtRs_BetaCoV_GX2013 | ATG | AAA | ATT | ATT | CTC | TTC | TTG | ACA | TTG | GTA | GCA | CTT | GCA | ACT | TGC | GAG | TTA | TAT | CAC | TAT | CAG | GAG | TGT | ATT | AGA | GGT | ACA | ACT | GTA | CTA | CTA | AAA | GAA | CCT | TGC | CCA | TCT | GGA | ACA | TAC | GAG | GGC | AAT | TCA | CCA | TTT | CAC | CCT | CTT | GCT | GAT | AAT | AAA | TTT | GCA | CTA | ACT | TGC | TCT | AGC | ACA | TAC | TTT | GCT | TTT | GCT | TGT | GCT | GAC | GGT | ACT | AGA | CAC | ACC | TAT | CAG | CTG | CGT | GCA | AGA | TCT | GTT | TCA | CCA | AAA | CTT | TTC | ATC | AGA | CAA | GAG | GAC | GTTCAT | CAA | GAG | CTC | TAC | TCA | CCA | CTT | TTC | CTC | ATT | GTT | GCT | GCA | TTA | GTA | TTT | ATA | ATA | CTT | TGC | TTC | ACC | ATT | AAG | AGA | AAG | ACA | GAA | TGA |
KF569996_Rhinolophus_affinis_CoV_LYRa11 | ATG | AAA | ATT | ATT | CTA | TTC | CTG | ACA | TTG | GTT | GTA | CTT | ACT | ACT | TGT | GAG | TTA | TAT | CAC | TAT | CAG | GAG | TGT | GTT | AGA | GGT | ACA | ACT | GTA | CTA | CTA | AAA | GAA | CCT | TGC | CCA | TCG | GGA | ACG | TAC | GAG | GGC | AAT | TCA | CCA | TTC | CAC | CCT | CTT | GCT | GAC | AAC | AAA | TTT | GCA | CTA | ACT | TGC | ACT | AGC | ACA | CAT | TTT | GCT | TTT | GCT | TGT | GCT | GAC | GGT | ACT | CGA | CAT | ACC | TAT | CAG | CTT | CGT | GCA | AGA | TCA | GTT | TCT | CCA | AAA | CTT | TTC | ATC | AGG | CAA | GAG | GAA | GTTCAT | CAA | GAG | CTC | TAT | TCA | CCA | CTT | TTT | CTC | ATT | GTT | GCT | GCT | CTA | GTA | TTT | ACA | ATA | CTT | TGC | TTC | ACC | ATT | AAG | AGA | AAT | TCC | GAA | TGA |
JX993988_Bat_CoV_Cp_Yunnan2011 | ATG | AAA | ATT | ATC | CTC | TTC | CTG | ACT | TTG | ATT | TCA | CTT | GCA | TTT | TGT | GAG | TTA | TAT | CAT | TAT | CAG | GAG | TGT | GTT | AGA | GGT | ACA | ACT | GTA | CTA | TTA | AAA | GAA | CCT | TGC | CCA | TCA | GGA | ACG | TAC | GAG | GGC | AAT | TCA | CCA | TTT | CAC | CCT | CTT | GCT | GAC | AAC | AAA | TTT | GCA | CTA | ACT | TGC | ATT | AGC | ACA | CAT | TTT | GCT | TTT | GCT | TGT | GCT | GAC | GGT | ACT | CGA | CAT | ACC | TAT | CAG | CTT | CGT | GCA | AGA | TCA | GTT | TCT | CCA | AAA | CTC | TTC | ATC | AGG | CAA | GAG | GAA | GTTCAT | CAA | GAG | CTC | TAT | TCA | CCA | CTT | TTT | CTC | ATT | GTT | GCC | GCT | CTA | GTA | TTT | ATA | ATA | CTT | TGC | TTC | ACC | ATT | AAG | AGA | AAG | ACC | GAA | TGA |
MK211374_CoV_BtRl_BetaCoV_SC2018 | ATG | AAA | ATT | ATT | CTC | TTC | CTG | GCA | TTG | ATT | GCA | CTT | GCA | TCT | TGC | AAG | CTA | TAT | CAC | TAC | CAA | GAG | TGT | GTT | AGA | GGT | ACA | ACT | GTA | CTA | CTA | AAA | GAA | CCT | TGC | CTA | TCT | GGA | ACT | TAT | GAG | GGC | AAT | TCA | CCA | TTT | CAT | CCT | CTT | GCT | GAT | AAC | AAA | TTT | GCA | TTA | ACT | TGC | ATT | AGC | ACT | CAT | TTT | GCT | TTT | GCT | TGT | GCT | GAC | GGT | ACT | AGA | CAT | ACT | TAT | CAG | CTT | CGT | GCA | AGA | TCA | GTT | TCA | CCA | AAA | CTT | TTC | ATC | AGA | CAA | GAG | GAA | GTTCAT | CAA | GAG | CTC | TAC | CCG | CCA | CTT | TTT | CTC | ATT | GTT | GCT | GCT | CTA | GTA | TTT | ATA | ATA | CTT | TGC | TTC | ACC | ATT | AAG | AGA | AAG | ACA | GAA | TGA |
KJ473814_BtRs_BetaCoV_HuB2013 | ATG | AAA | ATT | ATT | CTC | TTC | CTG | ACA | CTG | ATT | GCA | CTT | GCT | TCC | AGC | GAG | CTA | TAT | CAC | TAT | CAG | GAG | TGT | GTT | AGG | GGT | ACT | ACT | GTA | CTA | CTA | AAA | GAA | CCT | TGC | CCA | TCA | GGA | ACC | TAC | GAG | GGC | AAT | TCA | CCA | TTT | CAT | CCT | CTT | GCT | GAC | AAC | AAA | TTT | GCA | CTA | ACT | TGC | ATT | AGC | ACA | CAT | TTT | GCT | TTT | GCT | TGC | GCT | GAC | GGT | ACT | AGA | CAT | ACC | TAT | CAG | TTG | CGT | GCA | AGA | TCA | GTT | TCG | CCA | AAA | CTT | TTC | ATC | AGA | CAG | GAG | GAA | GTTCAC | CAA | GAG | CTC | TAC | TCA | CCA | CTT | TTT | CTC | ATT | GTT | GCT | GCT | CTA | GTA | TTT | ATA | ATA | CTT | TGC | TTC | ACC | ATT | AAG | AGA | AAG | ACA | GAA | TGA |
DQ412043_Bat_SARS_CoV_Rm1 | ATG | AAA | ATT | ATT | CTC | TTC | TTG | ACA | TTG | ATT | GCA | CTT | GCT | TCC | AGC | GAG | CTA | TAT | CAC | TAT | CAG | GAG | TGT | GTT | AGA | GGT | ACC | ACT | GTA | CTA | CTA | AAA | GAA | CCT | TGC | CCG | TCA | GGG | ACC | TAC | GAG | GGC | AAT | TCA | CCA | TTT | CAT | CCT | CTT | GCT | GAC | AAC | AAA | TTT | GCA | CTA | ACT | TGC | ATT | AGC | ACA | CAT | TTT | GCT | TTT | GCT | TGC | GCT | GAC | GGT | ACT | AGA | CAT | ACC | TAT | CAG | TTG | CGT | GCA | AGA | TCA | GTT | TCG | CCA | AAA | CTT | TTC | ACC | AGA | CAG | GAG | GAA | GTTCAC | CAA | GAG | CTC | TAT | TCA | CCA | CTT | TTT | CTC | ATT | GTT | GCT | GCT | CTA | GTA | TTT | ATA | ATA | CTT | TGC | TTC | ACC | ATT | AAG | AGA | AAG | ACA | GAA | TGA |
KY938558_Bat_CoV_strain_16BO133 | ATG | AAA | ATT | ATT | CTC | TTC | TCG | ATA | TTG | ATT | GTA | CTT | GCA | ACT | TGC | GAG | TTA | TAT | CAC | TAT | CAA | GAG | TGT | GTT | AGA | GGT | ACT | ACT | GTA | CTA | TTA | GAG | GAA | CCT | TGC | CCA | TCA | GGA | ACT | TAC | GAG | GGC | AAT | TCA | CCA | TTT | CAT | CCT | CTT | GCT | GAT | AAC | AAA | TTT | GCA | CTA | ACT | TGC | ATT | AGC | ACA | CAT | TTT | GCT | TTT | GCT | TGT | GCT | GAC | GGT | ACT | AGA | CAT | ACC | TAT | CAG | CTT | CGT | GCA | AGA | TCA | GTT | TCA | CCT | AAA | CTT | TTC | ACC | AGA | CAA | GAG | AAA | GTTTAC | CAA | GAG | CTC | TAT | TCG | CCG | CTT | TTT | CTC | ATT | GTT | ATT | GCT | TTA | GTA | TTT | ATA | ATA | CTT | TGC | TTC | ACC | ATT | AAG | AGG | AAG | ATA | GAA | TGA |
DQ412042_Bat_SARS_CoV_Rf1 | ATG | AAA | ATT | ATT | CTC | TTC | CTG | ACA | CTG | ATT | GCA | CTT | GCA | ACT | TGC | GAG | TTA | TAT | CAC | TAT | CAG | GAG | TGT | GTT | AGA | GGT | ACC | ACT | GTA | CTA | TTA | GAA | GAA | CCT | TGC | CCA | TCA | GGA | ACA | TAT | GAG | GGC | AAT | TCA | CCA | TTT | CAT | CCC | CTT | GCT | GAC | AAC | AAA | TTT | GCA | CTA | ACT | TGC | ATT | AGC | ACA | CAT | TTT | GCT | TTT | GCC | TGT | GCT | GAC | GGT | ACT | AGA | CAT | ACC | TAT | CAG | CTT | CGT | GCA | AGA | TCA | GTT | TCA | CCT | AAA | CTT | TTC | ACC | AGA | CAA | GAG | AAA | GTTTAC | CAA | GAG | CTC | TAT | TCG | CCG | CTT | TTT | CTC | ATT | GTT | GCG | GCT | TTA | GTA | TTT | ATA | ATA | CTT | TGC | TTC | ACC | ATT | AAG | AGA | AAG | ACA | GAA | TGA |
DQ648856_Bat_CoV_BtCoV_273_2005 | ATG | AAA | ATT | ATT | CTC | TTC | CTG | ACA | CTG | ATT | GCA | CTT | GCA | ACT | TGC | GAG | TTA | TAT | CAC | TAT | CAG | GAG | TGT | GTT | AGA | GGT | ACC | ACT | GTA | CTA | TTA | GAA | GAA | CCT | TGC | CCA | TCA | GGA | ACA | TAT | GAG | GGC | AAT | TCA | CCA | TTT | CAT | CCC | CTT | GCT | GAC | AAC | AAA | TTT | GCA | CTA | ACT | TGC | ATT | AGC | ACA | CAT | TTT | GCT | TTT | GCC | TGT | GCT | GAC | GGT | ACT | AGA | CAT | ACC | TAT | CAG | CTT | CGT | GCA | AGA | TCA | GTT | TCA | CCT | AAA | CTT | TTC | ACC | AGA | CAA | GAG | AAA | GTTTAC | CAA | GAG | CTC | TAT | TCG | CCG | CTT | TTT | CTC | ATT | GTT | GCG | GCT | TTA | GTA | TTT | ATA | ATA | CTT | TGC | TTC | ACC | ATT | AAG | AGA | AAG | ACA | GAA | TGA |
KJ473812_BtRf_BetaCoV_HeB2013 | ATG | AAA | ATT | ATT | CCC | TTC | TTG | ACA | TTG | ATT | GTA | CTT | GCA | ACT | TGC | GAG | TTA | TAT | CAC | TAT | CAA | GAG | TGT | GTT | AGA | GGT | ACC | ACT | GTA | CTA | TTA | GAA | GAA | CCT | TGC | CCG | TCA | GGA | ACT | TAC | GAG | GGC | AAT | TCA | CCA | TTT | CAT | CCT | CTT | GCT | GAT | AAC | AAA | TTT | GCA | CTA | ACT | TGC | ACT | AGC | ACA | CAT | TTT | GCT | TTT | GCT | TGT | GCT | GAC | GGT | ACT | AGA | CAT | ACC | TAT | CAG | CTT | CGT | GCA | AGA | TCA | GTT | TCA | CCT | AAA | CTT | TTC | ATC | AGA | CAA | GAG | AAA | GTTTAC | CAA | GAG | CTC | TAT | TCG | CCG | CTT | TTT | CTC | ATT | GTT | GCT | GCT | TTA | GTA | TTT | ATA | ATA | CTT | TGC | TTC | ACC | ATT | AAG | AGG | AAG | ACA | GAA | TGA |
KY770860_Bat_CoV_Jiyuan_84 | ATG | AAA | ATT | ATT | CTC | TTC | TTG | ACA | TTG | ATT | GTA | CTT | GCA | ACT | TGC | GAG | TTA | TAT | CAC | TAT | CAA | GAG | TGT | GTT | AGA | GGT | ACC | ACT | GTA | CTA | TTA | GAA | GAA | CCT | TGC | CCG | TCA | GGA | ACT | TAC | GAG | GGC | AAT | TCA | CCA | TTT | CAT | CCT | CTT | GCT | GAT | AAC | AAA | TTT | GCA | CTA | ACT | TGC | ACT | AGC | ACA | CAT | TTT | GCT | TTT | GCT | TGT | GCT | GAC | GGT | ACT | AGA | CAT | ACC | TAT | CAG | CTT | CGT | GCA | AGA | TCA | GTT | TCA | CCT | AAA | CTT | TTC | ATC | AGA | CAA | GAG | AAA | GTTTAC | CAA | GAG | CTC | TAT | TCG | CCG | CTT | TTT | CTC | ATT | GTT | GCT | GCT | TTA | GTA | TTT | ATA | ATA | CTT | TGC | TTC | ACC | ATT | AAG | AGG | AAG | ACA | GAA | TGA |
JX993987_Bat_CoV_Rp_Shaanxi2011 | ATG | AAA | ATT | ATT | CTC | TTC | CTG | GCT | TTG | ATT | GCA | CTG | GCA | TCT | TGC | GAG | TTA | TAT | CAC | TAC | CAG | GAG | TGT | GTT | AGA | GGT | ACT | ACT | GTA | CTA | CTA | AAA | GAA | CCC | TGC | CCA | TCA | GGA | ACA | TAC | GAG | GGC | AAT | TCA | CCA | TTT | CAT | CCT | CTT | GCT | GAC | AAT | AAA | TTC | GCA | CTA | ACT | TGC | ATT | AGC | ACA | CAC | TTT | GCT | TTT | GCT | TGC | GCT | GAC | GGT | ACT | AGA | CAT | ACC | TAT | CAG | TTG | CGT | GCG | AGA | TCA | GTT | TCA | CCA | AAA | CTT | TTC | ATC | AGA | CAA | GAG | GAA | GTTCAC | CAA | GAG | CTC | TAT | TCG | CCA | CTT | TTT | CTC | ATT | GTT | GCT | GCT | CTA | GTA | TTT | ATA | ATA | CTT | TGC | TTC | ACT | TTT | AAG | AAG | AAG | ACA | GAA | TGA |
GQ153542_Bat_SARS_CoV_HKU3_7 | ATG | AAA | ATT | ATT | CTC | TTC | TTG | ACA | TTG | GTA | GCA | CTT | ACA | ACT | TGT | GAG | TTA | TAT | CAT | TAT | CAG | GAG | TGT | GTT | AGA | GGT | ACA | ACT | GTA | CTA | CTA | AAA | GAA | CCT | TGC | CCA | TCA | GGA | ACA | TAC | GAG | GGC | AAT | TCA | CCA | TTT | CAC | CCT | CTT | GCT | GAT | AAT | AAA | TTT | GCA | CTA | ACT | TGC | TCT | AGC | ACA | CAC | TTT | GCT | TTT | GCT | TGT | GCT | GAC | GGT | ACT | AGA | CAT | ACC | TAT | CAG | CTG | CGT | GCA | AGA | TCT | GTT | TCA | CCA | AAA | CTT | TTC | ATC | AGA | CAA | GAG | GAC | GTTCAC | CAA | GAG | CTC | TAC | TCA | CCA | CTT | TTC | CTC | ATT | GTT | GCT | GCA | TTA | GTA | TTT | ATA | ATA | CTT | TGC | TTC | ACC | ATT | AAG | AGA | AAG | ACA | GAA | TGA |
DQ022305_Bat_SARS_CoV_HKU3_1 | ATG | AAA | ATT | ATT | CTC | TTC | TTG | ACA | TTG | ATA | GCG | CTT | GCA | ACT | TGT | GAG | TTA | TAT | CAT | TAT | CAG | GAG | TGT | GTT | AGG | GGT | ACG | ACT | GTA | CTA | CTA | AAA | GAA | CCT | TGC | CCA | TCA | GGA | ACA | TAT | GAG | GGC | AAT | TCA | CCA | TTT | CAC | CCT | CTT | GCT | GAT | AAT | AAA | TTT | GCA | CTA | ACT | TGC | TCT | AGC | ACA | CAT | TTT | GCT | TTT | GCT | TGT | GCT | GAC | GGT | ACT | AGA | CAC | ACC | TAT | CAG | CTT | CGT | GCA | AGA | TCA | GTT | TCA | CCA | AAA | CTT | TTC | ATC | AGA | CAA | GAG | GAA | GTTTAT | CAA | GAG | CTC | TAC | TCA | CCA | CTT | TTC | CTC | ATT | GTT | GCT | GCA | TTA | GTA | TTT | ATA | ATA | CTT | TGC | TTC | ACC | ATT | AAG | AGA | AAG | ACA | GAA | TGA |
GQ153547_Bat_SARS_CoV_HKU3_12 | ATG | AAA | ATT | ATT | CTC | TTC | TTG | ATA | TTG | ATA | GCG | CTT | GCA | ACT | TGT | GAG | TTA | TAT | CAT | TAT | CAG | GAG | TGT | GTT | AGG | GGT | ACG | ACT | GTA | CTA | CTA | AAA | GAA | CCT | TGC | CCA | TCA | GGA | ACA | TAT | GAG | GGC | AAT | TCA | CCA | TTT | CAC | CCT | CTT | GCT | GAT | AAT | AAA | TTT | GCA | CTA | ACT | TGC | TCT | AGC | ACA | CAT | TTT | GCT | TTT | GCT | TGT | GCT | GAC | GGT | ACT | AGA | CAC | ACC | TAT | CAG | CTT | CGT | GCA | AGA | TCA | GTT | TCA | CCA | AAA | CTT | TTC | ATC | AGA | CAG | GAG | GAA | GTTTAT | CAA | GAG | CTC | TAC | TCA | CCA | CTT | TTC | CTC | ATT | GTT | GCT | GCA | TTA | GTA | TTT | ATA | ATA | CTT | TGC | TTC | ACC | ATT | AAG | AGA | AAG | ACA | GAA | TGA |
KY352407_SARS_related_CoV_strain_BtKY72 | ATG | AAA | TTT | CTT | TTA | CTC | TTG | ATT | GTC | GTA | AAT | GTT | GCT | CTA | GCT | GAC | CTT | TAC | CAC | TAT | CAA | GAG | TGT | GCT | AGA | GGC | ACT | ACG | GTG | TTA | TTA | AGT | GAA | CCT | TGC | TCC | CCT | AAC | ACG | TAC | GAG | GGC | AAT | TCA | CCT | TAT | CAC | CCT | TTG | GCT | GAC | AAT | AAG | TTT | GCT | GTC | ACT | TGT | ACA | ACT | ACA | AAG | TTT | AGC | TTT | GTT | TGT | CAA | GAT | TCT | ACC | AGA | CAC | ACG | TAT | CAG | TTA | CGT | GCT | CGG | GCA | TTT | ACA | CCG | AGG | CTT | TTT | GCC | ACC | AAA | GTA | CAA | CAACAA | CAG | GAC | GAC | TTG | TTC | ACT | CCT | GTT | GTT | TTA | ATC | GTG | TTT | ACA | TTG | CTT | TT- | --C | CTT | ATC | TAC | CTT | TTT | AAG | AGA | AAG | --- | TGA | TGC |
NC_014470_Bat_CoV_BM48_31_BGR_2008 | ATG | AAA | TTT | CTT | TTA | CTC | GTG | GCA | ATT | GTA | AGT | ATA | GCA | TCA | GCA | GAA | CTT | TAC | CAT | TAC | CAA | GAG | TGT | GCT | AGA | GGT | ACA | ACC | GTA | CTC | TTA | AAG | GAG | CCT | TGC | CAA | CCT | AAT | ACT | TAC | GAA | GGC | AAC | TCA | CCT | TAT | CAC | CCT | TTG | GCT | GAC | AAC | AAG | TTT | GCT | ATC | ACT | TGT | ACA | AAC | ACC | AAA | TTT | AGT | TTT | GTT | TGT | CAG | GAC | GAG | ACA | AGA | CAC | GTA | TTT | CAA | TTA | CGT | GCC | CGG | TCT | ATT | TCA | CCC | AGA | CTT | TTT | GCC | AGT | CCA | AAA | CAT | CAT--- | AGT | GAC | GAT | TTC | ACC | CCG | GTG | ATC | CTT | ATT | ATT | GTC | ACA | TTG | CTC | TTT | GTA | ATC | TAC | TGT | TGC | ATG | --- | --- | --- | AAG | AGA | CAA | TGA |
ORF7a_protein