NC_045512_SARS_CoV_2_Wuhan_Hu_1_aa | M | D | L | F | M | R | I | F | T | I | G | T | V | T | L | K | Q | G | E | I | K | D | A | T | P | S | D | F | V | R | A | T | A | T | I | P | I | Q | A | S | L | P | F | G | W | L | I | V | G | V | A | L | L | A | V | F | Q | S | A | S | K | I | I | T | L | K | K | R | W | Q | L | A | L | S | K | G | V | H | F | V | C | N | L | L | L | L | F | V | T | V | Y | S | H | L | L | L | V | A | A | G | L | E | A | P | F | L | Y | L | Y | A | L | V | Y | F | L | Q | S | I | N | F | V | R | I | I | M | R | L | W | L | C | W | K | C | R | S | K | N | P | L | L | Y | D | A | N | Y | F | L | C | W | H | T | N | C | Y | D | Y | C | I | P | Y | N | S | V | T | S | S | I | V | I | T | S | G | D | G | T | T | S | P | I | S | E | H | D | Y | Q | I | G | G | Y | T | E | K | W | E | S | G | V | K | D | C | V | V | L | H | S | Y | F | T | S | D | Y | Y | Q | L | Y | S | T | Q | L | S | T | D | T | G | V | E | H | V | T | F | F | I | Y | N | K | I | V | D | E | P | E | E | H | V | Q | I | H | T | I | D | G | S | S | G | V | V | N | P | V | M | E | P | I | Y | D | E | P | T | T | T | T | S | V | P | L | * |
NC_045512_SARS_CoV_2_Wuhan_Hu_1 | ATG | GAT | TTG | TTT | ATG | AGA | ATC | TTC | ACA | ATT | GGA | ACT | GTA | ACT | TTG | AAG | CAA | GGT | GAA | ATC | AAG | GAT | GCT | ACT | CCT | TCA | GAT | TTT | GTT | CGC | GCT | ACT | GCA | ACG | ATA | CCG | ATA | CAA | GCC | TCA | CTC | CCT | TTC | GGA | TGG | CTT | ATT | GTT | GGC | GTT | GCA | CTT | CTT | GCT | GTT | TTT | CAG | AGC | GCT | TCC | AAA | ATC | ATA | ACC | CTC | AAA | AAG | AGA | TGG | CAA | CTA | GCA | CTC | TCC | AAG | GGT | GTT | CAC | TTT | GTT | TGC | AAC | TTG | CTG | TTG | TTG | TTT | GTA | ACA | GTT | TAC | TCA | CAC | CTT | TTG | CTC | GTT | GCT | GCT | GGC | CTT | GAA | GCC | CCT | TTT | CTC | TAT | CTT | TAT | GCT | TTA | GTC | TAC | TTC | TTG | CAG | AGT | ATA | AAC | TTT | GTA | AGA | ATA | ATA | ATG | AGG | CTT | TGG | CTT | TGC | TGG | AAA | TGC | CGT | TCC | AAA | AAC | CCA | TTA | CTT | TAT | GAT | GCC | AAC | TAT | TTT | CTT | TGC | TGG | CAT | ACT | AAT | TGT | TAC | GAC | TAT | TGT | ATA | CCT | TAC | AAT | AGT | GTA | ACT | TCT | TCA | ATT | GTC | ATT | ACT | TCA | GGT | GAT | GGC | ACA | ACA | AGT | CCT | ATT | TCT | GAA | CAT | GAC | TAC | CAG | ATT | GGT | GGT | TAT | ACT | GAA | AAA | TGG | GAA | TCT | GGA | GTA | AAA | GAC | TGT | GTT | GTA | TTA | CAC | AGT | TAC | TTC | ACT | TCA | GAC | TAT | TAC | CAG | CTG | TAC | TCA | ACT | CAA | TTG | AGT | ACA | GAC | ACT | GGT | GTT | GAA | CAT | GTT | ACC | TTC | TTC | ATC | TAC | AAT | AAA | ATT | GTT | GAT | GAG | CCT | GAA | GAA | CAT | GTC | CAA | ATT | CAC | ACA | ATC | GAC | GGT | TCA | TCC | GGA | GTT | GTT | AAT | CCA | GTA | ATG | GAA | CCA | ATT | TAT | GAT | GAA | CCG | ACG | ACG | ACT | ACT | AGC | GTG | CCT | TTG | TAA |
MN996532_Bat_CoV_RaTG13 | ATG | GAT | TTG | TTT | ATG | AGA | ATT | TTC | ACA | CTT | GGA | ACT | GTA | ACT | TTG | AAA | CAA | GGT | GAA | ATT | AAG | GAT | GCT | ACT | CCT | TCA | GAT | TCT | GTT | CGC | GCT | ACT | GCA | ACG | ATA | CCG | ATA | CAA | GCC | TCA | CTC | CCT | TTC | GGA | TGG | CTT | ATT | GTT | GGC | GTT | GCA | TTT | CTT | GCT | GTT | TTT | CAA | AGC | GCT | TCC | AAG | ATC | ATA | ACC | CTT | AAA | AAG | AGA | TGG | CAA | CTA | GCA | CTC | TCT | AAG | GGT | ATT | CAC | TTT | ATT | TGC | AAC | TTG | CTG | CTG | CTG | TTT | GTA | ACA | GTT | TAC | TCA | CAT | CTT | TTG | CTC | GTT | GCT | GCT | GGT | CTT | GAA | GCC | CCA | TTC | CTC | TAC | CTC | TAC | GCT | TTA | GTC | TAC | TTC | TTG | CAG | AGT | ATA | AAC | TTT | GTA | AGA | ATA | ATA | ATG | AGG | CTT | TGG | CTT | TGC | TGG | AAA | TGC | CGT | TCC | AAA | AAC | CCA | TTA | CTC | TAT | GAT | GCT | AAC | TAC | TTC | CTT | TGT | TGG | CAT | ACT | AAT | TGT | TAT | GAC | TAT | TGT | ATA | CCT | TAC | AAT | AGT | GTA | ACT | TCT | TCA | ATT | GTC | ATT | ACT | TCA | GGT | GAT | GGC | ACA | ACA | AGT | CCT | ATT | TCT | GAA | CAT | GAC | TAC | CAG | ATT | GGT | GGT | TAT | ACT | GAA | AAA | TGG | GAG | TCT | GGA | GTA | AAA | GAC | TGT | GTT | GTA | TTA | CAC | AGT | TAC | TTC | ACT | TCA | GAT | TAT | TAC | CAG | CTG | TAC | TCA | ACT | CAA | TTG | AGC | ACA | GAC | ACT | GGT | GTT | GAA | CAT | GTT | ACC | TTC | TTC | ATC | TAC | AAT | AAA | ATT | GTT | GAT | GAG | CCT | GAA | GAA | CAT | GTC | CAA | ATT | CAC | ACA | ATC | GAC | GGT | TCA | TCC | GGA | GTT | GTT | AAT | CCA | GCA | ATG | GAA | CCA | ATT | TAT | GAT | GAA | CCG | ACG | ACG | ACT | ACT | AGC | GTG | CCT | TTG | TAA |
MG772933_Bat_SARS_like_CoV_bat_SL_CoVZC45 | ATG | GAT | TTG | TTT | ATG | AGA | ATT | TTC | ACT | CTT | GGA | ACT | GTT | ACT | CTT | AAA | CAA | GGT | GAA | ATC | AAA | GGT | GCT | ACT | CCT | ACA | AAT | TCT | GTT | CGC | ACT | ACT | GCA | ACA | ATA | CCG | ATA | CAA | GCC | ACA | CTC | CCT | TTC | GGA | TGG | CTT | GTT | GTT | GGC | GTT | GCA | ATT | CTT | GCT | GTT | TTT | CAA | AGC | GCT | TCA | AAA | ATA | ATT | ACA | CTC | AAA | AAG | AGA | TGG | CAG | TTA | GCC | CTC | TCT | AAA | GGT | GTT | CAT | TTT | GTT | TGC | AAC | TTG | CTT | CTG | CTG | TTT | TTA | ACA | GTT | TAT | TCT | CAC | TTG | TTG | CTT | CTT | GCT | GGT | GGC | TTG | GAA | GCC | ACT | TTT | CTC | TTT | CTT | TAT | GCA | TTA | GCT | TAT | TGC | TTG | CAA | ACT | GTA | AAT | TTT | GTG | AGA | ATA | ATA | ATG | CGA | TTC | TGG | TTG | TGC | TGG | AAG | TGC | CGT | TCC | AAG | AAT | CCT | TTA | CTC | TAT | GAT | GCC | AAC | TAC | TTT | CTT | TGT | TGG | CAT | ACT | AAT | TGT | TAT | GAC | TAT | TGT | ATA | CCA | TAC | AAT | AGT | GTA | ACC | TCT | TCA | ATT | GTC | ATC | ACA | TGT | GGT | GAT | GGT | ACT | ACG | AAT | CCC | ATT | TCT | GAG | GAC | GAC | TAC | CAA | ATT | GGT | GGT | TAC | ACG | GAA | AAG | TGG | GAG | TCT | GGT | GTT | AAG | GAC | TGT | GTT | GTA | TTA | CAT | AGT | TAT | TTC | ACC | TCA | GAT | TAC | TAC | CAG | CTG | TAC | TCA | ACA | CAA | GTG | AGT | ACA | GAC | ACT | GGT | GTT | GAA | CAT | GTT | ACT | TTC | TTC | ATC | TAC | AAT | AAA | ATT | GTT | GAT | GAG | CCT | GAA | GAA | CAT | GTT | CAA | ATT | CAC | ACA | ATC | GAC | GGT | ACA | TCT | GGA | GTT | GTT | AAT | CCA | GCA | ATG | GAA | CCA | ATT | TAT | GAT | GAA | CCG | ACG | ACG | ACT | ACT | AGC | GTG | CCT | TTG | TAA |
MG772934_Bat_SARS_like_CoV_bat_SL_CoVZXC21 | ATG | GAT | TTG | TTT | ATG | AGA | ATT | TTC | ACA | CTT | GGA | ACT | GTA | AGT | CTG | AAA | CAA | GGT | GAA | ATT | AAG | GAT | GCT | ACT | CCT | TCA | GAT | TCT | ATT | CGC | GCT | ACT | GCA | ACA | ATA | CCG | ATA | CAA | GCC | ACA | CTC | CCT | TTC | GGA | TGG | CTT | GTT | GTT | GGC | GTT | GCA | ATT | CTT | GCT | GTT | TTT | CAA | AGC | GCT | TCA | AAA | ATA | ATT | ACA | CTC | AAA | AAG | AGA | TGG | CAG | TTA | GCC | CTC | TCT | AAA | GGT | GTC | CAC | TTT | GTT | TGC | AAC | TTG | CTT | CTG | CTG | TTT | TTA | ACA | GTT | TAC | TCA | CAC | CTA | TTG | CTT | GTT | GCT | GGT | GGC | TTA | GAA | GCC | ACT | TTT | CTT | TTT | CTT | TAT | GCA | TTA | GCT | TAT | TGC | TTG | CAA | ACT | GTA | AAT | TTT | GTG | AGA | ATA | ATA | ATG | CGA | TTC | TGG | TTG | TGC | TGG | AAG | TGC | CGC | TCC | AAG | AAT | CCT | GTA | CTT | TAT | GAT | GCC | AAC | TAC | TTT | CTT | TGT | TGG | CAT | ACT | AAT | TGT | TAT | GAC | TAT | TGT | ATA | CCA | TAC | AAT | AGT | GTA | ACC | TCT | TCA | ATC | GTC | ATC | ACA | TGT | GGT | GAT | GGT | ACT | ACG | AAT | CCC | ATT | TCT | GAG | GAT | GAC | TAC | CAA | ATT | GGT | GGT | TAC | ACG | GAA | AAG | TGG | GAG | TCT | GGT | GTT | AAG | GAC | TGT | GTT | GTA | TTA | CAT | AGT | TAT | TTC | ACC | TCA | GAC | TAC | TAC | CAG | CTG | TAC | TCA | ACA | CAA | TTG | AGC | ACA | GAC | ACT | GGT | GTT | GAA | CAT | GTT | ACT | TTC | TTC | ATC | TAC | AAT | AAA | ATT | GTT | GAT | GAG | CCT | GAA | GAA | CAT | GTC | CAA | ATT | CAC | ACA | ATC | GAC | GGT | ACA | TCT | GGA | GTT | GTT | AAT | CCA | GCA | ATG | GAA | CCA | ATT | TAT | GAT | GAA | CCG | ACG | ACG | ACT | ACT | AGC | GTG | CCT | TTG | TAA |
NC_004718_SARS_CoV | ATG | GAT | TTG | TTT | ATG | AGA | TTT | TTT | ACT | CTT | AGA | TCA | ATT | ACT | GCA | CAG | CCA | GTA | AAA | ATT | GAC | AAT | GCT | TCT | CCT | GCA | AGT | ACT | GTT | CAT | GCT | ACA | GCA | ACG | ATA | CCG | CTA | CAA | GCC | TCA | CTC | CCT | TTC | GGA | TGG | CTT | GTT | ATT | GGC | GTT | GCA | TTT | CTT | GCT | GTT | TTT | CAG | AGC | GCT | ACC | AAA | ATA | ATT | GCG | CTC | AAT | AAA | AGA | TGG | CAG | CTA | GCC | CTT | TAT | AAG | GGC | TTC | CAG | TTC | ATT | TGC | AAT | TTA | CTG | CTG | CTA | TTT | GTT | ACC | ATC | TAT | TCA | CAT | CTT | TTG | CTT | GTC | GCT | GCA | GGT | ATG | GAG | GCG | CAA | TTT | TTG | TAC | CTC | TAT | GCC | TTG | ATA | TAT | TTT | CTA | CAA | TGC | ATC | AAC | GCA | TGT | AGA | ATT | ATT | ATG | AGA | TGT | TGG | CTT | TGT | TGG | AAG | TGC | AAA | TCC | AAG | AAC | CCA | TTA | CTT | TAT | GAT | GCC | AAC | TAC | TTT | GTT | TGC | TGG | CAC | ACA | CAT | AAC | TAT | GAC | TAC | TGT | ATA | CCA | TAT | AAC | AGT | GTC | ACA | GAT | ACA | ATT | GTC | GTT | ACT | GAA | GGT | GAC | GGC | ATT | TCA | ACA | CCA | AAA | CTC | AAA | GAA | GAC | TAC | CAA | ATT | GGT | GGT | TAT | TCT | GAG | GAT | AGG | CAC | TCA | GGT | GTT | AAA | GAC | TAT | GTC | GTT | GTA | CAT | GGC | TAT | TTC | ACC | GAA | GTT | TAC | TAC | CAG | CTT | GAG | TCT | ACA | CAA | ATT | ACT | ACA | GAC | ACT | GGT | ATT | GAA | AAT | GCT | ACA | TTC | TTC | ATC | TTT | AAC | AAG | CTT | GTT | AAA | GAC | CC- | --A | CCG | AAT | GTG | CAA | ATA | CAC | ACA | ATC | GAC | GGC | TCT | TCA | GGA | GTT | GCT | AAT | CCA | GCA | ATG | GAT | CCA | ATT | TAT | GAT | GAG | CCG | ACG | ACG | ACT | ACT | AGC | GTG | CCT | TTG | TAA |
KT444582_SARS_like_CoV_WIV16 | ATG | GAT | TTG | TTT | ATG | AGA | ATT | TTT | ACT | CTT | GGA | TCA | ATT | ACT | GCA | CAG | CCA | GGA | AAA | ATT | GAC | AAT | GCT | TCT | CCT | GCA | AGT | ACT | GTT | CAT | GCT | ACA | GCA | ACG | ATA | CCG | CTA | CAA | GCC | TCA | CTC | CCT | TTC | GGA | TGG | CTT | GTT | ATT | GGC | GTT | GCA | TTT | CTT | GCT | GTT | TTT | CAG | AGC | GCT | ACC | AAA | ATA | ATT | TCG | CTC | AAT | AAA | AGA | TGG | CAG | CTA | GCC | CTT | TAT | AAG | GGC | TTC | CAG | TTC | ATT | TGC | AAT | TTA | CTG | CTG | CTA | TTT | GTT | ACC | ATC | TAT | TCA | CAT | CTT | TTG | CTT | GTC | GCT | GCA | GGT | ATG | GAG | GCG | CAA | TTT | TTG | TAC | CTC | TAT | GCC | TTG | ATA | TAT | TTT | CTA | CAA | TGC | ATC | AAC | GCA | TGT | AGA | ATT | ATC | ATG | AGA | TGT | TGG | CTT | TGT | TGG | AAG | TGC | AAA | TCC | AAG | AAC | CCA | TTA | CTT | TAT | GAT | GCC | AAC | TAC | TTT | GTT | TGC | TGG | CAC | ACA | CAT | AAC | TAT | GAC | TAC | TGT | ATA | CCG | TAT | AAC | AGT | GTC | ACA | GAT | ACA | ATT | GTC | GTT | ACT | GCA | GGT | GAC | GGC | ATT | TCA | ACA | CCA | AAA | CTC | AAA | GAA | GAC | TAC | CAA | ATT | GGT | GGT | TAT | TCT | GAG | AAT | TGG | CAC | TCA | GGT | GTT | AAA | GAC | TAT | GTC | GTT | GTA | CAT | GGC | TAT | TTC | ACC | GAA | GTT | TAC | TAC | CAG | CTT | GAG | TCT | ACA | CAA | ATT | ACT | ACA | GAC | ACT | GGT | ATT | GAA | AAT | GCT | ACA | TTC | TTC | ATC | TTT | AAC | AAG | CTT | GTT | AAA | GAC | CC- | --A | CCG | AAT | GTG | CAA | ATA | CAC | ACA | ATC | GAC | GGC | TCT | TCA | GGA | GTT | GTA | AAT | CCA | GCA | ATG | GAT | CCA | ATT | TAT | GAT | GAG | CCG | ACG | ACG | ACT | ACT | AGC | GTG | CCT | TTG | TAA |
KY417146_Bat_SARS_like_CoV_Rs4231 | ATG | GAT | TTG | TTT | ATG | AGA | ATT | TTT | ACT | CTT | GGA | TCA | ATT | ACT | GCA | CAG | TCA | GGA | AAA | ATT | GAC | AAT | GCT | TCT | CCT | GCA | AGT | ACT | GTT | CAT | GCT | ACA | GCA | ACG | ATA | CCG | CTA | CAG | GCC | TCA | CTC | CCT | TTC | GGA | TGG | CTT | GTT | ATT | GGC | GTT | GCA | TTT | CTT | GCT | GTT | TTT | CAG | AGC | GTT | ACC | AAA | ATA | ATT | GCG | CTC | AAT | AAA | AGA | TGG | CAG | CTA | GCC | CTT | TAT | AAG | GGC | TTC | CAG | TTC | ATT | TGC | AAT | TTA | CTG | CTG | CTA | TTT | GTT | ACC | ATC | TAT | TCA | CAT | CTT | TTG | CTT | GTC | GCT | GCG | GGT | ATG | GAG | GCG | CAA | TTT | TTG | TAC | CTC | TAT | GCC | TTG | ATA | TAT | TTT | CTA | CAA | TGC | ATC | AAC | GCA | TGT | AGA | ATT | ATC | ATG | AGA | TGT | TGG | CTT | TGT | TGG | AAG | TGC | AAA | TCC | AAG | AAC | CCA | TTA | CTC | TAT | GAT | GCC | AAC | TAC | TTT | GTT | TGC | TGG | CAT | ACA | CAT | AAC | TAT | GAC | TAC | TGT | ATA | CCA | TAT | AAC | AGT | GTC | ACA | GAT | ACA | ATC | GTC | GTT | ACT | GCA | GGT | GAC | GGC | ATT | TCA | ACA | CCA | AAA | CTC | AAA | GAA | GAC | TAC | CAA | ATT | GGT | GGT | TAT | TCT | GAG | GAT | TGG | CAC | TCA | GGT | GTT | AAA | GAC | TAT | GTC | GTT | GTA | CAT | GGC | TAT | TTC | ACC | GAA | GTT | TAC | TAC | CAG | CTT | GAG | TCT | ACA | CAA | ATT | ACT | ACA | GAC | ACT | GGT | ATT | GAA | AAT | GCT | ACA | TTC | TTC | ATC | TTT | AAC | AAG | CTT | GTT | AAA | GAT | CC- | --A | CAG | AAT | GTG | CAA | ATA | CAC | ACA | ATC | GAC | GGC | TCT | TCA | GGA | GTT | GTA | AAT | CCA | GCA | ATG | GAT | CCA | ATT | TAT | GAT | GAG | CCG | ACG | ACG | ACT | ACT | AGC | GTG | CCT | TTG | TAA |
MK211376_CoV_BtRs_BetaCoV_YN2018B | ATG | GAT | TTG | TTT | ATG | AGA | ATT | TTT | ACT | CTT | GGA | TCA | ATT | ACT | GCA | CAG | TCA | GGA | AAA | ATT | GAC | AAT | GCT | TCT | CCT | GCA | GGT | ACT | GTT | CAT | GCT | ACA | GCA | ACG | ATA | CCG | CTA | CAG | GCC | TCA | CTC | CCT | TTC | GGA | TGG | CTT | GTT | ATT | GGC | GTT | GCA | TTT | CTT | GCT | GTT | TTT | CAG | AGC | GCT | ACC | AAA | ATA | ATT | GCG | CTC | AAT | AAA | AGA | TGG | CAG | CTA | GCC | CTT | TAT | AAG | GGC | TTC | CAG | TTC | ATT | TGC | AAT | TTA | CTG | CTG | CTA | TTT | ATT | ACC | ATC | TAT | TCA | CAT | CTT | TTG | CTT | GTC | GCT | GCG | GGT | ATG | GAG | GCG | CAA | TTT | TTG | TAC | CTC | TAT | GCC | TTG | ATA | TAT | TTT | CTA | CAA | TGC | ATC | AAC | GCA | TGT | AGA | ATT | ATC | ATG | AGA | TGT | TGG | CTT | TGT | TGG | AAG | TGT | AAA | TCC | AAG | AAC | CCA | TTA | CTT | TAT | GAT | GCC | AAC | TAC | TTT | GTT | TGC | TGG | CAC | ACA | CAT | AAC | TAT | GAC | TAC | TGT | ATA | CCA | TAT | AAC | AGT | GTC | ACA | GAT | ACA | ATT | GTC | GTT | ACT | GCA | GGT | GAC | GGC | ATT | TCA | ACA | CCA | AAA | CTC | AAA | GAA | GAC | TAC | CAA | ATT | GGT | GGT | TAT | TCT | GAG | AAT | TGG | CAC | TCA | GGT | GTT | AAA | GAC | TAT | GTC | GTC | GTA | CAT | GGC | TAT | TTC | ACT | GAA | GTT | TAC | TAC | CAG | CTT | GAG | TCT | ACA | CAA | ATT | ACT | ACA | GAC | ACT | GGT | ATT | GAA | AAT | GCT | ACA | TTC | TTC | ATC | TTT | AAC | AAG | CTT | GTT | AAA | GAT | CC- | --G | CCG | AAT | GTG | CAA | ATA | CAC | ACA | ATC | GAC | GGC | TCT | TCA | GGA | GTT | GTA | AAT | CCA | GCA | ATG | GAT | CCA | ATT | TAT | GAT | GAG | CCG | ACG | ACG | ACT | ACT | AGC | GTG | CCT | TTG | TAA |
KY417151_Bat_SARS_like_CoV_Rs7327 | ATG | GAT | TTG | TTT | ATG | AGA | ATT | TTT | ACT | CTT | GGA | TCA | ATT | ACT | GCA | CAG | CCA | GGA | AAA | ATT | GAC | AAT | GCT | TCT | CCT | GCA | AGT | ACT | GTT | CAT | GCT | ACA | GCA | ACG | ATA | CCA | CTA | CAA | GCC | TCA | CTC | CCT | TTC | GGA | TGG | CTT | GTT | ATT | GGC | GTT | GCA | TTT | CTT | GCT | GTT | TTT | CAG | AGC | GCT | ACC | AAA | ATA | ATT | GCG | CTC | AAT | AAA | AGA | TGG | CAG | CTA | GCC | CTT | TAT | AAG | GGC | TTC | CAG | TTC | ATT | TGC | AAT | TTA | TTG | CTG | CTA | TTT | GTT | ACC | ATC | TAT | TCA | CAT | CTT | TTG | CTT | GTC | GCT | GCA | GGT | ATG | GAG | GCG | CAA | TTT | TTG | TAC | CTC | TAT | GCC | TTA | ATA | TAT | TTT | CTA | CAA | TGC | ATC | AAC | GCA | TGT | AGA | ATT | ATC | ATG | AGA | TGT | TGG | CTT | TGT | TGG | AAG | TGC | AAA | TCC | AAG | AAC | CCA | TTA | CTT | TAT | GAT | GCC | AAC | TAC | TTT | GTT | TGC | TGG | CAC | ACA | CAT | AAC | TAT | GAC | TAC | TGT | ATA | CCA | TAT | AAC | AGT | GTC | ACA | GAT | ACA | ATT | GTC | GTT | ACT | GCA | GGT | GAC | GGC | ATT | TCA | ACA | CCA | AAA | CTC | AAA | GAA | GAC | TAC | CAA | ATT | GGT | GGT | TAT | TCT | GAG | AAT | TGG | CAC | TCA | GGT | GTT | AAA | GAC | TAT | GTC | GTC | GTA | CAT | GGC | TAT | TTC | ACC | GAA | GTT | TAC | TAC | CAG | CTT | GAG | TCT | ACA | CAA | ATT | ACT | ACA | GAC | ACT | GGT | ATT | GAA | AAT | GCT | ACA | TTC | TTC | ATC | TTT | AAC | AAG | CTT | GTT | AAA | GAC | CC- | --A | CCG | AAT | GTG | CAA | ATA | CAC | ACA | ATC | GAC | GGC | TCT | TCA | GGA | GTT | GCA | AAT | CCA | GCA | ATG | GAT | CCA | ATT | TAT | GAT | GAG | CCG | ACG | ACG | ACT | ACT | AGC | GTG | CCT | TTG | TAA |
KY417152_Bat_SARS_like_CoV_Rs9401 | ATG | GAT | TTG | TTT | ATG | AGA | ATT | TTT | ACT | CTT | GGA | TCA | ATT | ACT | GCA | CAT | CCA | GGA | AAA | ATT | GAC | AAT | GCT | TCT | CCT | GCA | AGT | ACT | GTT | CAT | GCT | ACA | GCA | ACG | ATA | CCA | CTA | CAA | GCC | TCA | CTC | CCT | TTC | GGA | TGG | CTT | GTT | ATT | GGC | GTT | GCA | TTT | CTT | GCT | GTT | TTT | CAG | AGC | GCT | ACC | AAA | ATA | ATT | GCG | CTC | AAT | AAA | AGA | TGG | CAG | CTA | GCC | CTT | TAT | AAG | GGC | TTC | CAG | TTC | ATT | TGC | AAT | TTA | TTG | CTG | CTA | TTT | GTT | ACC | ATC | TAT | TCA | CAT | CTT | TTG | CTT | GTC | GCT | GCA | GGT | ATG | GAG | GCG | CAA | TTT | TTG | TAC | CTC | TAT | GCC | TTA | ATA | TAT | TTT | CTA | CAA | TGC | ATC | AAC | GCA | TGT | AGA | ATT | ATC | ATG | AGA | TGT | TGG | CTT | TGT | TGG | AAG | TGC | AAA | TCC | AAG | AAC | CCA | TTA | CTT | TAT | GAT | GCC | AAC | TAC | TTT | GTT | TGC | TGG | CAT | ACA | CAT | AAC | TAT | GAC | TAC | TGT | ATA | CCA | TAT | AAC | AGT | GTC | ACA | GAT | ACA | ATT | GTC | GTT | ACT | GCA | GGT | GAC | GGC | ATT | TCA | ACA | CCA | AAA | CTC | AAA | GAA | GAC | TAC | CAA | ATT | GGT | GGT | TAT | TCT | GAG | AAT | TGG | CAC | TCA | GGT | GTT | AAA | GAC | TAT | GTC | GTT | GTA | CAT | GGC | TAT | TTC | ACC | GAA | GTT | TAC | TAC | CAG | CTT | GAG | TCT | ACA | CAA | ATT | ACT | ACA | GAC | ACT | GGT | ATT | GAA | AAT | GCT | ACA | TTC | TTC | ATC | TTT | AAC | AAG | CTT | GTT | AAA | GAC | CC- | --A | CCG | AAT | GTG | CAA | ATA | CAC | ACA | ATC | GAC | GGC | TCT | TCA | GGA | GTT | GTA | AAT | CCA | GCA | ATG | GAT | CCA | ATT | TAT | GAT | GAG | CCG | ACG | ACG | ACT | ACT | AGC | GTG | CCT | TTG | TAA |
KY417144_Bat_SARS_like_CoV_Rs4084 | ATG | GAT | TTG | TTT | ATG | AGA | ATT | TTT | ACT | CTT | GGA | TCA | ATT | ACT | GCA | CAG | CCA | GGA | AAA | ATT | GAC | AAT | GCT | TCT | CCT | GCA | AGT | ACT | GTT | CAT | GCT | ACA | GCA | ACG | ATA | CCG | CTA | CAA | GCC | TCA | CTC | CCT | TTC | GGA | TGG | CTT | GTT | ATT | GGC | GTT | GCA | TTT | CTT | GCT | GTT | TTT | CAG | AGC | GCT | ACC | AAA | ATA | ATT | TCG | CTC | AAT | AAA | AGA | TGG | CAG | CTA | GCC | CTT | TAT | AAG | GGC | TTC | CAG | TTC | ATT | TGC | AAT | TTA | CTG | CTG | CTA | TTT | GTT | ACC | ATC | TAT | TCA | CAT | CTT | TTG | CTT | GTC | GCT | GCA | GGT | ATG | GAG | GCG | CAA | TTT | TTG | TAC | CTC | TAT | GCC | TTG | ATA | TAT | TTT | CTA | CAA | TGC | ATC | AAC | GCA | TGT | AGA | ATT | ATC | ATG | AGA | TGT | TGG | CTT | TGT | TGG | AAG | TGC | AAA | TCC | AAG | AAC | CCA | TTA | CTT | TAT | GAT | GCC | AAC | TAC | TTT | GTT | TGC | TGG | CAC | ACA | CAT | AAC | TAT | GAC | TAC | TGT | ATA | CCA | TAT | AAC | AGT | GTC | ACA | GAT | ACA | ATT | GTC | GTT | ACT | GCA | GGT | GAC | GGC | ATT | TCA | ACA | CCA | AAA | CTC | AAA | GAA | GAC | TAC | CAA | ATT | GGT | GGT | TAT | TCT | GAG | AAT | TGG | CAC | TCA | GGT | GTT | AAA | GAC | TAT | GTC | GTT | GTA | CAT | GGC | TAT | TTC | ACC | GAA | GTT | TAC | TAC | CAG | CTT | GAG | TCT | ACA | CAA | ATT | ACT | ACA | GAC | ACT | GGT | ATT | GAA | AAT | GCT | ACA | TTC | TTC | ATC | TTT | AAC | AAG | CTT | GTT | AAA | GAC | CC- | --A | CCG | AAT | GTG | CAA | ATA | CAC | ACA | ATC | GAC | GGC | TCT | TCA | GGA | GTT | GTA | AAT | CCA | GCA | ATG | GAT | CCA | ATT | TAT | GAT | GAG | CCG | ACG | ACG | ACT | ACT | AGC | GTG | CCT | TTG | TAA |
KF367457_Bat_SARS_like_CoV_WIV1 | ATG | GAT | TTG | TTT | ATG | AGA | ATT | TTT | ACT | CTT | GGA | CCA | ATT | ACT | GCA | CAG | CCA | GGA | AAA | ATT | GAC | AAT | GCT | TCT | CCT | GCA | AGT | ACT | GTT | CAT | GCT | ACA | GCA | ACG | ATA | CCG | CTA | CAA | GCC | TCA | CTC | CCT | TTC | GGA | TGG | CTT | GTT | ATT | GGC | GTT | GCA | TTT | CTT | GCT | GTT | TTT | CAG | AGC | GCT | ACC | AAA | ATA | ATT | TCG | CTC | AAT | AAA | AGA | TGG | CAG | CTA | GCC | CTT | TAT | AAG | GGC | TTC | CAG | TTC | ATT | TGC | AAT | TTA | CTG | CTG | CTA | TTT | GTT | ACC | ATC | TAT | TCA | CAT | CTT | TTG | CTT | GTC | GCT | GCA | GGT | ATG | GAG | GCG | CAA | TTT | TTG | TAC | CTC | TAT | GCC | TTG | ATA | TAT | TTT | CTA | CAA | TGC | ATC | AAC | GCA | TGT | AGA | ATT | ATC | ATG | AGA | TGT | TGG | CTT | TGT | TGG | AAG | TGC | AAA | TCC | AAG | AAC | CCA | TTA | CTT | TAT | GAT | GCC | AAC | TAC | TTT | GTT | TGC | TGG | CAC | ACA | CAT | AAC | TAT | GAC | TAC | TGT | ATA | CCG | TAT | AAC | AGT | GTC | ACA | GAT | ACA | ATT | GTC | GTT | ACT | GCA | GGT | GAC | GGC | ATT | TCA | ACA | CCA | AAA | CTC | AAA | GAA | GAC | TAC | CAA | ATT | GGT | GGT | TAT | TCT | GAG | AAT | TGG | CAC | TCA | GGT | GTT | AAA | GAC | TAT | GTC | GTT | GTA | CAT | GGC | TAT | TTC | ACC | GAA | GTT | TAC | TAC | CAG | CTT | GAG | TCT | ACA | CAA | ATT | ACT | ACA | GAC | ACT | GGT | ATT | GAA | AAT | GCT | ACA | TTC | TTC | ATC | TTT | AAC | AAG | CTT | GTT | AAA | GAC | CC- | --A | CCG | AAT | GTG | CAA | ATA | CAC | ACA | ATC | GAC | GGC | TCT | TCA | GGA | GTT | GTA | AAT | CCA | GCA | ATG | GAT | CCA | ATT | TAT | GAT | GAG | CCT | ACG | ACG | ACT | ACT | AGC | GTG | CCT | TTG | TAA |
KU973692_UNVERIFIED_SARS_related_CoV_F46 | ATG | GAT | TTG | TTT | ATG | AGT | ATT | TTC | ACG | CTT | GGA | TCA | ATC | ACA | CGT | CAA | TCG | AGT | AAG | ATT | GAA | AAT | GCT | TCT | CCT | GCA | AGT | ACT | GTT | CAT | ACT | ACT | GCA | ACG | ATA | CCG | CTA | CAG | GCC | TCA | CTC | CCT | TTC | GGA | TGG | CTT | GTT | GTT | GGC | GTT | GCA | CTT | CTT | GCT | GTT | TTC | CAA | AGC | GCT | TCC | AAA | GTG | ATT | GCG | CTT | CAT | AAT | AGG | TGG | CAG | CTT | GCC | CTG | TAT | AAA | GGC | ATT | CAG | CTT | GTT | TGC | AAT | TTG | CTG | CTA | CTT | TTT | GTG | ACA | ATT | TAC | TCA | CAC | CTT | CTA | CTT | TTA | GCT | GCT | GGC | ATG | GAG | ACA | CAA | TTT | TTG | TAC | ATC | TAT | GCT | GTG | ATT | TAC | ATT | CTA | CAA | GTT | GTA | AGC | TTC | TGT | AGA | CTT | ATC | ATG | AGA | TGC | TGG | CTT | TGC | TGG | AAG | TGC | AAA | TCC | AGA | AAC | CCA | TTA | CTT | TAT | GAT | GCC | AAC | TAC | TTT | GTT | TGC | TGG | CAT | ACA | CAC | AAC | CAT | GAC | TAC | TGT | ATA | CCA | TAT | AAC | AGT | GTC | ACG | GAT | ACA | ATT | GTC | ATC | ACT | GCA | GGT | GAT | GGC | ATT | TCA | AGG | CCA | AAA | CTT | CAT | GAA | GAC | TAC | CAA | ATA | GGT | GGT | TAT | TCT | GAG | GAT | TGG | CAC | TCA | GGT | GTT | AAA | GAC | TAT | GTC | GTT | GTA | CAT | GGC | TAC | TTC | ACC | GAA | GTT | TAC | TAC | CAG | CTT | GAG | TCT | ACA | CAG | ATT | ACT | ACT | GAC | ACT | GGT | ATT | GAA | AAT | GCT | ACA | TTC | TTC | ATC | TTT | AAC | AAG | CTT | GTC | AAA | GAT | CC- | --A | CCG | AAT | GTG | CAA | ATA | CAC | ACA | ATC | GAC | GGC | TCT | TCA | GGA | GTT | GTA | AAT | CCA | GTA | ATG | GAC | CCA | ATT | TAT | GAT | GAG | CCG | ACG | ACG | ACT | ACT | AGC | GTG | CCT | TTG | TAA |
KY417145_Bat_SARS_like_CoV_Rf4092 | ATG | GAT | TTG | TTT | ATG | AGT | ATT | TTC | ACA | CTT | GGA | TCG | ATC | ACG | CGT | CAA | CCG | AGT | AAG | ATT | GAA | AAT | GCT | TCT | CCT | GCA | AGT | ACT | GTT | CAT | GCT | ACT | GCA | ACG | ATA | CCG | CTA | CAA | GCC | TCA | CTC | CCT | TTC | GGA | TGG | CTT | GTT | ATT | GGC | GTT | GCA | CTT | CTT | GCT | GTT | TTT | CAA | AGC | GCT | TCC | AAA | GTG | ATT | GCG | CTT | CAT | AAG | AGG | TGG | CAG | CTT | GCC | CTG | TAT | AAA | GGC | ATT | CAG | CTT | GTT | TGC | AAT | TTG | CTG | CTA | CTC | TTT | GTG | ACA | ATT | TAC | TCA | CAC | CTC | CTA | CTT | TTA | GCT | GCT | GGC | ATG | GAG | GCA | CAA | TTT | TTG | TAC | ATC | TAT | GCT | CTT | ATT | TAT | ATT | CTG | CAA | GTT | GTG | AGC | TTC | TGC | AGA | TTT | GTT | ATG | AGA | TGC | TGG | CTT | TGC | TGG | AAG | TGC | AAA | TCC | AAA | AAC | CCA | TTA | CTT | TAT | GAT | GCC | AAC | TAC | TTT | GTT | TGC | TGG | CAC | ACA | CAC | AAC | TAT | GAC | TAC | TGT | ATA | CCA | TAC | AAC | AGC | ATC | ACA | GAT | ACA | ATT | GTC | GTT | ACT | GCA | GGT | GAC | GGC | ATT | TCA | ACA | CCA | AAA | CTC | AAA | GAA | GAC | TAC | CAA | ATT | GGC | GGT | TAT | TCT | GAG | AAT | TGG | CAC | TCA | GGT | GTT | AAA | GAC | TAT | GTC | GTT | GTA | CAT | GGC | TAT | TTC | ACC | GAA | ATT | TAC | TAC | CAG | CTT | GAG | TCT | ACA | CAA | ATT | ACT | ACA | GAC | ACT | GGT | ATT | GAA | AAT | GCT | ACA | TTC | TTC | ATC | TTT | AAC | AAG | CTT | GTT | AAA | GAT | CC- | --A | CCG | AAT | GTG | CAA | ATA | CAC | ACA | ATC | GAC | GGC | TCT | TCA | GGA | GTT | GTA | AAT | CCA | GCG | ATG | GAT | CCA | ATT | TAT | GAT | GAG | CCG | ACG | ACG | ACT | ACT | AGC | GTG | CCT | TTG | TAA |
KJ473816_BtRs_BetaCoV_YN2013 | ATG | GAT | TTG | TTT | ATG | AGT | ATT | TTC | ACA | CTT | GGA | TCG | ATC | ACA | CGT | CAA | CCG | AGT | AAG | ATT | GAA | AAT | GCT | TCT | CCT | GCA | AGT | ACT | GTT | CAT | GCT | ACT | GCA | ACG | ATA | CCG | CTA | CAA | GCC | TCA | CTC | CCT | TTC | GGA | TGG | CTT | GTT | GTT | GGC | GTT | GCA | CTT | CTT | GCT | GTT | TTT | CAA | AGC | GCT | TCC | AAA | GTG | ATT | GCG | CTT | CAT | AAG | AGG | TGG | CAG | CTT | GCC | CTG | TAT | AAA | GGC | ATT | CAG | CTT | GTT | TGC | AAT | TTG | CTG | CTA | CTC | TTT | GTG | ACA | ATT | TAC | TCA | CAC | CTC | CTA | CTT | TTA | GCT | GCT | GGC | ATG | GAG | GCA | CAA | TTT | TTG | TAC | ATC | TAT | GCT | CTG | ATT | TAT | ATT | CTG | CAA | GTT | GTG | AGC | TTC | TGC | AGA | TTT | GTT | ATG | AGA | TGC | TGG | CTT | TGC | TGG | AAG | TGC | AAA | TCC | AAA | AAC | CCA | TTA | CTT | TAT | GAT | GCC | AAC | TAC | TTT | GTT | TGC | TGG | CAC | ACA | CAC | AAC | TAT | GAC | TAC | TGT | ATA | CCA | TAC | AAC | AGC | GTC | ACA | GAT | ACA | ATT | GTC | GTT | ACT | GCA | GGT | GAC | GGC | ATT | TCA | ACA | CCA | AAA | CTC | AAA | GAA | GAC | TAC | CAA | ATT | GGT | GGT | TAT | TCT | GAG | GAT | TGG | CAC | TCA | GGT | GTT | AAA | GAC | TAT | GTC | GCT | GTA | CAT | GGC | TAT | TTC | ACC | GAA | GTT | TAC | TAC | CAG | CTT | GAG | TCT | ACA | CAA | ATT | ACT | ACA | GAC | ACT | GGT | ATT | GAA | AAT | GCT | ACA | TTC | TTC | ATC | TTT | AAC | AAG | CTT | GTT | AAA | GAC | CC- | --A | CCG | AAT | GTG | CAA | ATA | CAC | ACA | ATC | GAC | GGC | TCT | TCA | GGA | GTT | GCA | AAT | CCA | GCA | ATG | GAT | CCA | ATT | TAT | GAT | GAG | CCG | ACG | ACG | ACT | ACT | AGC | GTG | CCT | TTG | TAA |
KY770858_Bat_CoV_Anlong_103 | ATG | GAT | TTG | TTT | ATG | AGT | ATT | TTC | ACG | CTT | GGA | TCA | ATC | ACA | CGT | CAA | CCG | AGT | AAG | ATT | GAA | AAT | GCT | CTT | CCT | GCA | AGT | ACT | GTT | CAT | GCT | ACT | GCA | ACG | ATA | CCG | CTA | CAA | GCC | TCA | CTC | CCT | TTC | GGA | TGG | CTT | GTT | GTT | GGC | GTT | GCA | CTT | CTT | GCT | GTT | TTT | CAA | AGC | GCT | TCC | AAA | GTG | ATT | GCG | CTT | CAT | AAG | AGG | TGG | CAG | CTC | GCC | CTG | TAT | AAA | GGC | ATT | CAG | CTT | GTT | TGC | AAT | TTG | CTG | CTA | CTT | TTT | GTG | ACA | ATT | TAC | TCA | CAC | CTC | CTA | CTT | TTA | GCT | GCT | GGC | ATG | GAG | GCA | CAA | TTT | TTG | TAC | ATC | TAT | GCC | CTG | ATT | TAT | ATT | CTG | CAA | GTT | GTG | AGC | TTC | TGC | AGA | TTT | ATT | ATG | AGA | TGC | TGG | CTT | TGC | TGG | AAG | TGC | AAA | TCC | AAA | AAC | CCA | TTA | CTT | TAT | GAT | GCC | AAC | TAC | TTT | GTT | TGC | TGG | CAT | ACA | CAT | AAC | TAT | GAC | TAC | TGT | ATA | CCA | TAT | AAC | AGT | GTC | ACA | GAT | ACA | ATT | GTC | GTT | ACT | GCA | GGT | GAC | GGC | ATT | TCA | ACA | CCA | AAA | CTC | AAA | GAA | GAC | TAC | CAA | ATT | GGT | GGT | TAT | TCT | GAG | GAT | TGG | CAC | TCA | GGT | GTT | AAA | GAC | TAT | GTC | GTT | GTA | CAT | GGC | TAT | TTC | ACC | GAA | GTT | TAC | TAC | CAG | CTT | GAG | TCT | ACA | CAA | ATT | ACT | ACA | GAC | ACT | GGT | ATT | GAA | AAC | GCT | ACA | TTC | TTC | ATC | TTT | AAC | AAG | CTT | GTT | AAA | GAC | CC- | --A | TCG | AAT | GTG | CAA | ATA | CAC | ACA | ATC | GAC | GGC | TCT | TCA | GGA | GTT | GTA | AAT | CCA | GCA | ATG | GAT | CCA | ATT | TAT | GAT | GAG | CCG | ACG | ATG | ACT | ACT | AGC | GTG | CCT | TTG | TAA |
KY417143_Bat_SARS_like_CoV_Rs4081 | ATG | GAT | TTG | TTT | ATG | AGT | ATT | TTC | ACG | CTT | GGA | TCA | ATC | ACA | CGT | CAA | CCG | AGT | AAG | ATT | GAA | AAT | GCT | TCT | CCT | GCA | AGT | ACT | GTT | CAT | GCT | ACT | GCA | ACG | ATA | CCG | CTA | CAA | GCC | TCA | CTC | CCT | TTT | GGA | TGG | CTT | GTT | GTT | GGC | GTT | GCA | CTT | CTT | GCT | GTT | TTT | CAG | AGC | GCT | TCC | AAA | GTG | ATT | GCG | CTT | CAT | AAG | AGA | TGG | CAG | CTC | GCT | TTG | TAT | AAA | GGC | ATG | CAG | CTT | GTT | TGC | AAT | CTG | CTG | CTA | CTC | TTT | GTG | ACA | ATT | TAT | TCA | CAC | CTC | TTA | CTT | TTA | GCT | GCT | GGC | ATG | GAG | GCA | CAA | TTT | TTG | TAC | ATC | TAT | GCT | CTG | ATT | TAT | ATT | CTG | CAA | GTT | GTG | TGC | TTC | TGC | AGA | TTT | ATT | ATG | AGA | TGC | TGG | CTT | TGC | TGG | AAG | TGC | AAA | TCC | AAA | AAC | CCA | TTA | CTC | TAT | GAT | GTC | AAC | TAC | TTT | GTT | TGC | TGG | CAT | ACA | CAT | AAC | TAT | GAC | TAC | TGT | ATA | CCA | TAC | AAC | AGT | GTC | ACA | GAT | ACA | ATT | GTC | GTT | ACT | GCA | GGT | GAC | GGC | ATT | TCA | ACA | CCA | AAA | CTC | AAA | GAA | GAC | TAC | CAA | ATT | GGT | GGT | TAT | TCT | GAG | GAT | TGG | CAC | TCA | GGT | GTT | AAA | GAC | TAT | GTC | GTT | GTA | CAT | GGC | TAT | TTC | ACC | GAA | GTT | TAC | TAC | CAG | CTT | GAG | TCT | ACA | CAA | ATT | ACT | ACA | GAC | ACT | GGT | ATT | GAA | AAT | GCT | ACA | TTC | TTC | ATC | TTT | AAC | AAG | CTT | GTT | AAA | GAT | CC- | --A | CCG | AAT | GTG | CAA | ATA | CAC | ACA | ATC | GAC | GGC | TCT | TCA | GGA | GTT | GTA | AAT | CCA | GCA | ATG | GAT | CCA | ATT | TAT | GAT | GAG | CCG | ACG | ACG | ACT | ACT | AGC | GTG | CCT | TTG | TAA |
KY417149_Bat_SARS_like_CoV_Rs4255 | ATG | GAT | TTG | TTT | ATG | AGT | ATT | TTC | ACA | CTT | GGC | TCA | ATC | ACA | CGT | CAA | CCG | AGT | AAG | ATT | GAA | AAT | GCT | TCT | CCT | GCA | AGT | ACT | GTT | CAT | GCT | ACT | GCA | ACG | ATA | CCG | CTA | CAA | GCC | TCA | CTC | CCT | TTC | AGA | TGG | CTT | GTT | GTT | GGC | GTT | GCA | CTT | CTT | GCT | GTT | TTT | CAA | AGC | GCT | TCC | AAA | GTG | ATT | GCG | CTT | CAT | AAG | AGG | TGG | CAG | CTC | GCT | CTG | TAC | AAA | GGC | ATT | CAG | CTT | GTG | TGC | AAT | TTG | CTG | CTA | CTC | TTT | GTA | ACA | ATT | TAC | TCG | CAC | CTT | CTA | CTT | TTA | GCT | GCT | GGC | ATG | GAG | GCA | CAA | TTT | TTG | TAC | ATC | TAT | GCT | CTG | ATT | TAT | ATT | CTG | CAA | GCT | GTC | AGT | TTT | TGC | AGA | TTT | ATT | ATG | AGA | TGC | TGG | CTT | TGC | TGG | AAG | TGC | AAA | TCC | AAG | AAC | CCA | TTA | CTT | TAT | GAT | GCT | AAC | TAC | TTT | GTT | TGC | TGG | CAC | ACA | CAT | AAC | TAT | GAC | TAC | TGT | ATA | CCA | TAT | AAC | AGT | GTC | ACA | GAT | ACA | ATT | GTC | GTT | ACT | GCA | GGT | GAC | GGC | ATT | TCA | ACA | CCA | AAA | CTC | AAA | GAA | GAC | TAC | CAA | ATT | GGT | GGT | TAT | TCT | GAG | AAT | TGG | CAC | TCA | GGT | GTT | AAA | GAC | TAT | GTC | GTT | GTA | CAT | GGC | TAT | TTC | ACC | GAA | GTT | TAC | TAC | CAG | CTT | GAG | TCT | ACA | CAA | ATT | ACT | ACA | GAC | ACT | GGT | ATT | GAA | AAT | GCT | ACA | TTC | TTC | ATC | TTT | AAC | AAG | CTT | GTT | AAA | GAC | CC- | --A | CCG | AAT | GTG | CAA | ATA | CAT | ACA | ATC | GAC | GGC | TCT | TCA | GGA | GTT | GTA | AAT | CCA | GCA | ATG | GAT | CCA | ATT | TAT | GAT | GAG | CCG | ACG | ACG | ACT | ACT | AGC | GTG | CCT | TTG | TAA |
MK211378_CoV_BtRs_BetaCoV_YN2018D | ATG | GAT | TTG | TTT | ATG | AGT | ATT | TTC | ACA | CTT | GGC | TCA | ATC | ACA | CGT | CAA | CCG | AGT | AAG | ATT | GAC | AAT | GCT | TCT | CCT | GCA | GGT | ACT | GTT | CAT | GCT | ACA | GCA | ACG | ATA | CCG | CTA | CAG | GCC | TCA | CTC | CCT | TTC | GGA | TGG | CTT | GTT | ATT | GGC | GTT | GCA | TTT | CTT | GCT | GTT | TTT | CAG | AGC | GCT | ACC | AAA | ATA | ATT | GCG | CTC | AAT | AAA | AAA | TGG | CAG | CTA | GCC | CTT | TAT | AAG | GGC | TTC | CAG | TTC | ATT | TGC | AAT | TTA | CTG | CTG | CTA | TTT | ATT | ACC | ATC | TAT | TCA | CAT | CTT | TTG | CTT | GTC | GCT | GCG | GGT | ATG | GAG | GCG | CAA | TTT | TTG | TAC | CTC | TAT | GCC | TTG | ATA | TAT | TTT | CTA | CAA | TGC | ATC | AAC | GCA | TGT | AGA | ATT | ATC | ATG | AGA | TGT | TGG | CTT | TGT | TGG | AAG | TGT | AAA | TCC | AAG | AAC | CCA | TTA | CTT | TAT | GAT | GCC | AAC | TAC | TTT | GTT | TGC | TGG | CAC | ACA | CAT | AAC | TAT | GAC | TAC | TGT | ATA | CCA | TAT | AAC | AGT | GTC | ACA | GAT | ACA | ATT | GTC | GTT | ACT | GCA | GGT | GAC | GGC | ATT | TCA | ACA | CCA | AAA | CTC | AAA | GAA | GAC | TAC | CAA | ATT | GGT | GGT | TAT | TCT | GAG | AAT | TGG | CAC | TCA | GGT | GTT | AAA | GAC | TAT | GTC | GTC | GTA | CAT | GGC | TAT | TTC | ACT | GAA | GTT | TAC | TAC | CAG | CTT | GAG | TCT | ACA | CAA | ATT | ACT | ACA | GAC | ACT | GGT | ATT | GAA | AAT | GCT | ACA | TTC | TTC | ATC | TTT | AAC | AAG | CTT | GTT | AAA | GAT | CC- | --G | CCG | AAT | GTG | CAA | ATA | CAC | ACA | ATC | GAC | GGC | TCT | TCA | GGA | GTT | GTA | AAT | CCA | GCA | ATG | GAT | CCA | ATT | TAT | GAT | GAG | CCG | ACG | ACG | ACT | ACT | AGC | GTG | CCT | TTG | TAA |
FJ588686_Bat_SARS_CoV_Rs672_2006 | ATG | GAT | TTG | TTT | ATG | AGT | ATT | TTC | ACG | CTC | GGA | TCA | ATC | ACA | CGT | CAA | CCG | AGT | AAG | ATT | GAA | AAT | GCT | CTT | CCT | GCA | AGT | ACT | GTT | CAT | GCT | ACT | GCA | ACG | ATA | CCG | CTA | CAA | GCC | TCA | CTC | CCT | TTC | GGA | TGG | CTT | GTT | GTT | GGC | GTT | GCA | CTT | CTT | GCT | GTT | TTT | CAA | AGC | GCT | TCC | AAA | GTG | ATT | GCG | CTT | CAT | AAG | AGG | TGG | CAG | CTC | GCC | CTG | TAT | AAA | GGC | ATT | CAG | CTT | GTT | TGC | AAT | TTG | CTG | CTA | CTT | TTT | GTG | ACA | ATT | TAC | TCA | CAC | CTA | CTA | CTT | TTA | GCT | GCT | GGC | ATG | GAG | GCA | CAA | TTT | TTG | TAC | ATC | TAT | GCC | CTG | ATT | TAT | ATT | CTG | CAA | GTT | GTG | AGC | TTC | TGC | AGA | TTT | ATT | ATG | AGG | TGC | TGG | CTT | TGC | TGG | AAG | TGC | AAA | TCC | AAA | AAC | CCA | TTA | CTT | CAT | GAT | GCC | AAC | TAC | TTT | GTT | TGC | TGG | CAT | ACA | CAT | AAC | TAT | GAC | TAC | TGT | ATA | CCA | TAT | AAC | AGT | GTC | ACA | GAT | ACA | ATT | GTC | GTT | ACT | GCA | GGT | GAC | GGC | ATT | TCA | ACA | CCA | AAA | CTC | AAA | GAA | GAC | TAC | CAA | ATT | GGT | GGT | TAT | TCT | GAG | GAT | TGG | CAC | TCA | GGT | GTT | AAA | GAT | TAT | GTC | GTT | GTA | CAT | GGC | TAT | TTC | ACC | GAA | GTT | TAC | TAC | CAG | CTT | GAG | TCT | ACA | CAA | ATT | ACT | ACA | GAC | ACT | GGT | ATT | GAA | AAT | GCT | ACA | TTC | TTC | ATC | TTT | AAC | AAG | CTT | GTT | AAA | GAC | CC- | --A | CCG | AAT | GTG | CAA | ATA | CAC | ACA | ATC | GAC | GGC | TCT | TCA | GGA | GTT | GTA | AAT | CCA | GCA | ATG | GAT | CCA | ATT | TAT | GAT | GAG | CCG | ACG | ATG | ACT | ACT | AGC | GTG | CCT | TTG | TAA |
MK211377_CoV_BtRs_BetaCoV_YN2018C | ATG | GAT | TTG | TTT | ATG | AGT | ATT | TTC | ACA | CTT | GGC | TCA | ATC | ACA | CGT | CAA | CCG | AGT | AAG | ATT | GAA | AAT | GCT | TCT | CCT | GCA | AGT | ACT | GTT | CAT | GCT | ACT | GCA | ACG | ATA | CCG | CTA | CAA | GCC | TCA | CTC | CCT | TTC | AGA | TGG | CTT | GTT | GTT | GGC | GTT | GCA | CTT | CTT | GCT | GTT | TTT | CAA | AGC | GCT | TCC | AAA | GTG | ATT | GCG | TTT | CAT | AAG | AGG | TGG | CAG | CTC | GCT | CTG | CAC | AAA | GGC | ATT | CAG | CTT | GTT | TGC | AAT | TTG | CTG | CTA | CTC | TTT | GTA | ACA | ATT | TAC | TCA | CAC | CTT | CTA | CTT | TTA | GCT | GCT | GGC | ATG | GAG | GCA | CAA | TTT | TTG | TAC | ATC | TAT | GCT | TTG | ATT | TAT | GTT | CTG | CAA | GCT | GTC | AGC | TTT | TGC | AGA | TTT | ATT | ATG | AGA | TGT | TGG | CTT | TGC | TGG | AAG | TGC | AAA | TCC | AAA | AAC | CCA | ATA | CTT | TAT | GAT | GCC | AAC | TAC | TTC | GTT | TGC | TGG | CAT | ACA | CAT | AAC | TAT | GAC | TAC | TGT | ATA | CCA | TAC | AAC | AGT | GTC | ACA | GAT | ACA | ATT | GTC | GTT | ACT | GCA | GGT | GAC | GGC | ATT | TCA | ACA | CCA | AAA | CTC | AAA | GAA | GAC | TAC | CAA | ATT | GGT | GGT | TAT | TCT | GAG | GAT | TGG | CAC | TCA | GGT | GTT | AAA | GAC | TAT | GTC | GTT | GTA | CAT | GGC | TAT | TTC | ACC | GAA | GTT | TAC | TAC | CAG | CTT | GAG | TCT | ACA | CAA | ATT | ACT | ACA | GAC | ACT | GGT | ATT | GAA | AAT | GCT | ACA | TTC | TTC | ATC | TTT | AAC | AAG | CTT | GTT | AAA | GAT | CC- | --A | CCG | AAT | GTG | CAA | ATA | CAC | ACA | ATC | GAC | GGC | TCT | TCA | GGA | GTT | GTA | AAT | CCA | GCA | ATG | GAT | CCA | ATT | TAT | GAT | GAG | CCG | ACG | ACG | ACT | ACT | AGC | GTG | CCT | TTG | TAA |
KY417142_Bat_SARS_like_CoV_As6526 | ATG | GAT | TTG | TTT | ATG | AGT | ATT | TTC | ACA | CTT | GGA | TCA | ATC | ACA | CGT | CAA | CCG | AGT | AAG | ATT | GAA | AAT | GCT | TCT | CCT | GCA | AGT | ACT | GTT | CAT | GCT | ACT | GCA | ACG | ATA | CCG | CTA | CAA | GCC | TCA | CTC | CCT | TTC | GGA | TGG | CTT | GTT | GTT | GGC | GTT | GCA | CTT | CTT | GCT | GTT | TTT | CAA | AGC | GCT | TCC | AAA | GTG | ATT | GCG | CTT | CAT | AAG | AGG | TGG | CAG | CTT | GCC | CTG | TAT | AAA | GGC | ATT | CAG | CTT | GTT | TGC | AAT | TTG | CTG | CTA | CTC | TTT | GTG | ACA | ATT | TAC | TCA | CAC | CTC | CTA | CTT | TTA | GCT | GCT | GGC | ATG | GAG | GCA | CAA | TTT | TTG | TAC | ATC | TAT | GCT | CTG | ATT | TAT | ATT | CTG | CTA | GTT | GTG | AGC | TTC | TGC | AGA | TTT | GTT | ATG | AGA | TGC | TGG | CTT | TGC | TGG | AAG | TGT | AAA | TCC | AAA | AAC | CCA | TTA | CTC | TAT | GAC | GCC | AAC | TAC | TTT | GTT | TGC | TGG | CAT | ACA | CAT | AAC | TAT | GAC | TAC | TGT | ATA | CCA | TAT | AAC | AGT | GTC | ACA | GAT | ACA | ATC | GTC | GTT | ACT | GCA | GGT | GAC | GGC | ATT | TCA | ACA | CCA | AAA | CTC | AAA | GAA | GAC | TAC | CAA | ATT | GGT | GGT | TAT | TCT | GAG | GAT | TGG | CAC | TCA | GGT | GTT | AAA | GAC | TAT | GTC | GTT | GTA | CAT | GGC | TAT | TTC | ACC | GAA | GTT | TAC | TAC | CAG | CTT | GAG | TCT | ACA | CAA | ATT | ACT | ACA | GAC | ACT | GGT | ATT | GAA | AAT | GCT | ACA | TTC | TTC | ATC | TTT | AAC | AAG | CTT | GTT | AAA | GAT | CC- | --A | CCG | AAT | GTG | CAA | ATA | CAC | ACA | ATC | GAC | GGC | TCT | TCA | GGA | GTT | GTA | AAT | CCA | GCA | ATG | GAT | CCA | ATT | TAT | GAT | GAG | CCG | ACG | ACG | ACT | ACT | AGC | GTG | CCT | TTG | TAA |
KY417147_Bat_SARS_like_CoV_Rs4237 | ATG | GAT | TTG | TTT | ATG | AGT | ATT | TTC | ACG | CTT | GGA | TCA | ATC | ACA | CGT | CAA | CCA | AGT | AAG | ATT | GAA | AAT | GCT | TCT | CCT | GCA | AGT | ACT | GTT | CAT | GCT | ACT | GCA | ACG | ATA | CCG | TTA | CAA | GCC | TCA | CTC | CCT | TTC | GGA | TGG | CTT | GTT | GTT | GGC | GTT | GCA | CTT | CTT | GCT | GTT | TTT | CAA | AGC | GCT | TCC | AAA | GTG | ATT | GCG | CTT | CAT | AAG | AGG | TGG | CAG | CTC | GCT | ATG | TAC | AAA | GGC | ATT | CAG | CTT | GTT | TGC | AAT | TTG | CTG | CTA | CTC | TTT | GTA | ACA | ATT | TAC | TCA | CAC | CTT | TTA | CTT | TTA | GCT | GCT | GGC | ATG | GAG | GCA | CAA | TTT | TTG | TAC | ATC | TAT | GCT | CTG | ATT | TAT | ATT | CTG | CAA | GCT | GTG | AGC | TTC | TGC | AGA | TTT | ATC | ATG | AGA | TGT | TGG | CTT | TGT | TGG | AAG | TGC | AAA | TCC | AAA | AAC | CCA | TTA | CTC | TAT | GAT | GCC | AAC | TAC | TTT | GTT | TGC | TGG | CAT | ACA | CAT | AAC | TAT | GAC | TAC | TGT | ATA | CCA | TAC | AAC | AGT | GTC | ACA | GAT | ACA | ATT | GTC | GTT | ACT | GCA | GGT | GAC | GGC | ATT | TCA | ACA | CCA | AAA | CTC | AAA | GAA | GAC | TAC | CAA | ATT | GGT | GGT | TAT | TCT | GAG | GAT | TGG | CAC | TCA | GGT | GTT | AAA | GAC | TAT | GTC | GTT | GTA | CAT | GGC | TAT | TTC | ACC | GAA | GTT | TAC | TAC | CAG | CTT | GAG | TCT | ACA | CAA | ATT | ACT | ACA | GAC | ACT | GGT | ATT | GAA | AAT | GCT | ACA | TTC | TTC | ATC | TTT | AAC | AAG | CTT | GTT | AAA | GAT | CC- | --A | CCG | AAT | GTG | CAA | ATA | CAC | ACA | ATC | GAC | GGC | TCT | TCA | GGA | GTT | GTA | AAT | CCA | GCA | ATG | GAT | CCA | ATT | TAT | GAT | GAG | CCG | ACG | ACG | ACT | ACT | AGC | GTG | CCT | TTG | TAA |
KY417148_Bat_SARS_like_CoV_Rs4247 | ATG | GAT | TTG | TTT | ATG | AGT | ATT | TTC | ACG | CTT | GGA | TCA | ATC | ACA | CGT | CAA | CCG | AGT | AAG | ATT | GAA | AAT | GCT | TCT | CCT | GCA | AGT | ACT | GTT | CAT | GCT | ACT | GCA | ACG | ATA | CCG | CTA | CAA | GCC | TCA | CTC | CCT | TTC | GGA | TGG | CTT | GTT | GTT | GGC | GTT | GCA | CTT | CTT | GCT | GTT | TTT | CAG | AGC | GCT | TCC | AAA | GTG | ATT | GCG | CTT | CAT | AAG | AGA | TGG | CAG | CTC | GCT | TTG | TGT | AAA | GGC | ATG | CAG | CTT | GTT | TGC | AAT | TTG | CTG | CTA | CTC | TTT | GTG | ACA | ATT | TAT | TCA | CAC | CTC | TTA | CTT | TTA | GCT | GCT | GGC | ATG | GAG | GCA | CAA | TTT | TTG | TAC | ATC | TAT | GCT | CTG | ATT | TAT | ATT | CTG | CAA | GTT | GTG | TGC | TTC | TGC | AGA | TTT | ATT | ATG | AGA | TGC | TGG | CTT | TGC | TGG | AAG | TGC | AAA | TCC | AAA | AAC | CCA | TTA | CTC | TAT | GAT | GCC | AAC | TAC | TTT | GTT | TGC | TGG | CAT | ACA | CAT | AAC | TAT | GAC | TAC | TGT | ATA | CCA | TAC | AAC | AGT | GTC | ACA | GAT | ACA | ATT | GTC | GTT | ACT | GCA | GGT | GAC | GGC | ATT | TCA | ACA | CCA | AAA | CTC | AAA | GAA | GAC | TAC | CAA | ATT | GGT | GGT | TAT | TCT | GAG | GAT | TGG | CAC | TCA | GGT | GTT | AAA | GAC | TAT | GTC | GTT | GTA | CAT | GGC | TAT | TTC | ACC | GAA | GTT | TAC | TAC | CAG | CTT | GAG | TCT | ACA | CAA | ATT | ACT | ACA | GAC | ACT | GGT | ATT | GAA | AAT | GCT | ACA | TTC | TTC | ATC | TTT | AAC | AAG | CTT | GTT | AAA | GAT | CC- | --A | CCG | AAT | GTG | CAA | ATA | CAC | ACA | ATC | GAC | GGC | TCT | TCA | GGA | GTT | GTA | AAT | CCA | GCA | ATG | GAT | CCA | ATT | TAT | GAT | GAG | CCG | ACG | ACG | ACT | ACT | AGC | GTG | CCT | TTG | TAA |
MK211375_CoV_BtRs_BetaCoV_YN2018A | ATG | GAT | TTG | TTT | ATG | AGT | ATT | TTC | ACA | CTT | GGA | TCA | ATC | ACA | CGT | CAA | CCG | AGT | AAG | ATT | GAA | AAT | GCT | TCT | CCT | GCA | AGT | ACT | GTT | CAT | GCT | ACT | GCA | ACG | ATA | CCG | CTA | CAA | GCC | TCA | CTC | CCT | TTC | GGA | TGG | CTT | GTT | GTT | GGC | GTT | GCA | CTT | CTT | GCT | GTT | TTT | CAA | AGC | GCT | TCC | AAA | GTG | ATT | GCG | CTT | CAT | AAG | AGG | TGG | CAG | CTT | GCC | CTG | TAT | AAA | GGC | ATC | CAG | CTT | GTT | TGC | AAT | TTG | CTG | CTA | CTC | TTT | GTG | ACA | ATT | TAT | TCA | CAC | CTC | CTA | CTT | TTA | GCT | GCT | GGC | ATG | GAG | GCA | CAA | TTT | TTG | TAC | ATC | TAT | GCT | CTG | ATT | TAT | ATT | CTG | CAA | GTT | GTG | AGC | TTC | TGC | AGA | TTT | GTT | ATG | AGA | TGC | TGG | CTT | TGC | TGC | AAG | TGC | AAA | TCC | AAA | AAC | CCA | TTA | CTT | TAT | GAT | GCC | AAC | TAC | TTT | GTT | TGC | TGG | CAT | ACA | CAT | AAC | TAT | GAC | TAC | TGT | ATA | CCA | TAC | AAC | AGC | GTC | ACA | GAT | ACA | ATC | GTC | GTT | ACT | GCA | GGT | GAC | GGC | ATT | TCA | ACA | CCA | AAA | CTC | AAA | GAA | GAC | TAC | CAA | GTT | GGT | GGT | TAT | TCT | GAG | GAT | TGG | CAC | TCA | GGT | GTT | AAA | GAC | TAT | GTC | GTT | GTA | CAT | GGC | TAT | TTC | ACC | GAA | GTT | TAC | TAC | CAG | CTT | GAG | TCT | ACA | CAA | ATT | ACT | ACA | GAC | ACT | GGT | ATT | GAA | AAT | GCT | ACA | TTC | TTC | ATC | TTT | AAC | AAG | CTT | GTT | AAA | GAT | CC- | --A | CCG | AAT | GTG | CAA | ATA | CAC | ACA | ATC | GAC | GGC | TCT | TCA | GGA | GTT | GTA | AAT | CCA | GCA | ATG | GAT | CCA | ATT | TAT | GAT | GAG | CCG | ACG | ACG | ACT | ACT | AGC | GTG | CCT | TTG | TAA |
DQ071615_Bat_SARS_CoV_Rp3 | ATG | GAT | TTG | TTT | ATG | AGC | ATT | TTC | ACA | TTA | GGA | GCA | ATC | ACA | CGT | CAA | CCA | GCC | AAA | ATT | GAA | AAT | GCT | TCT | CCT | GCA | AGT | ACT | GTT | CAT | GCT | ACA | GCA | ACG | ATA | CCG | CTA | CAG | GCC | TCA | CTC | CCT | TTC | GGA | TGG | CTT | GTT | GTT | GGC | GTT | GCA | CTT | CTT | GCT | GTT | TTT | CAA | AGC | GCT | TCC | AAG | GTG | ATT | GCG | CTA | CAT | AAG | AGG | TGG | CAG | CTT | GCC | TTG | CAT | AAA | GGC | ATT | CAG | CTT | GTA | TGC | AAT | CTG | CTG | CTA | CTT | TTT | GTG | ACA | ATT | TAC | TCA | CAC | CTT | CTA | CTG | TTA | GCT | GCT | GGC | ATG | GAG | GCA | CAA | TTT | CTG | TAC | ATC | TAT | GCC | CTG | ATT | TAT | ATT | CTG | CAA | ATC | GTA | AGT | TTT | TGT | AGA | TTT | ATC | ATG | AGA | TGC | TGG | CTG | TGC | TGG | AAG | TGC | AGA | TCC | AAA | AAT | CCA | TTA | CTT | TAT | GAT | GCT | AAC | TAC | TTT | GTA | TGT | TGG | CAC | ACC | AAT | TGC | TTT | GAC | TAC | TGT | ATA | CCA | TAT | AAC | AGT | ATC | ACT | GAC | ACA | ATC | GTC | CTC | ACC | TCA | GGT | GAC | GGA | ACT | ACC | CAA | CCA | AAA | CTT | AAG | GAA | GAT | TAC | CAA | ATT | GGT | GGT | TAT | TCT | GAG | GAT | TGG | CAT | TCA | GGT | GTA | AAA | GAC | TAT | GTA | GTA | ATA | CAT | GGT | TAT | TTC | ACC | GAA | GTT | TAC | TAC | CAG | TTG | GAA | TCG | ACA | CAA | CTG | TCG | ACT | GAT | ACT | GGT | GCT | GAA | AAT | GCT | ACA | TTC | TTC | ATC | TAT | AGC | AAG | CTT | GTT | AAA | GAT | GT- | --A | GAT | CAT | GTG | CAA | ATA | CAC | ACA | ATC | GAC | GGC | TCT | TCA | GGA | GTT | GTA | AAT | CCA | GCA | ATG | GAT | CCA | ATT | TAT | GAT | GAG | CCG | ACG | ACG | ACT | ACT | AGC | GTG | CCT | TTG | TAA |
KP886808_Bat_SARS_like_CoV_YNLF_31C | ATG | GAT | TTG | TTT | ATG | AGT | ATT | TTC | ACA | CTT | GGA | TCA | ATT | ACA | CGT | CAA | CCA | AGT | AAG | ATT | GAA | AAT | GCT | TTT | CTT | GCA | AGT | ACT | GTT | CAT | GCT | ACT | GCA | ACG | ATA | CCG | CTA | CAA | GCC | TCA | TTC | TCT | TTC | CGA | TGG | CTT | GTT | GTT | GGC | GTT | GCA | CTT | CTT | GCT | GTT | TTT | CAA | AGC | GCT | TCC | AAA | GTG | ATT | GCG | CTT | CAT | AAG | AGG | TGG | CAG | CTT | GCC | TTA | TAC | AAA | GGC | ACC | CAA | TTT | GTT | TGT | AAC | TTG | CTG | CTA | CTC | TTT | GTG | ACA | ATT | TAT | TCA | CAT | CTT | TTA | CTC | TTA | GCT | GCT | GGC | ATG | GAG | GTA | CAA | TTT | TTG | TAC | ATC | TAT | GCT | TTG | ATT | TAT | ATT | CTG | CAA | ATC | TTA | AAC | TTT | TGC | AGA | TTT | ATC | ATG | AGA | TGC | TGG | CTT | TGT | TGG | AAG | TGC | AAA | TCC | AAG | AAT | CCA | TTA | CTA | TAC | GAT | GCC | AAC | TAC | TTT | GTT | TGC | TGG | CAT | ACA | TAT | AAT | TAT | GAC | TAC | TGT | ATA | CCA | TAC | AAC | AGT | GTC | ACA | AAT | ACA | ATT | GTC | GTT | ACT | GCA | GGT | GAC | GGC | ATT | TCA | ACA | CCA | GAA | CTC | AAA | GAA | GAC | TAC | CAA | ATT | GGT | GGT | TAT | TCT | GAG | GAT | TGG | CAT | TCA | GGT | GTT | AAA | GAC | TAT | GTC | GTT | GTA | CAT | GGC | TAT | TTC | ACT | GAA | GTT | CAC | TAC | CAG | CTT | GAG | TCT | ACA | CAA | ATT | AGT | ACA | GAC | ACA | GGT | ATT | CAA | AAT | GCT | ACA | TTC | TTT | ATC | TTT | AAC | AAG | CTT | GTT | AAA | GAT | CC- | --A | CCG | AAT | GTG | CAA | ATA | CAC | ACA | ATC | GAC | GGC | TCT | TCA | GGA | GTT | GTA | AAT | CCA | GCA | ATG | GAT | CCA | ATT | TAT | GAC | GAG | CCG | ACG | ACG | ACT | ACT | AGC | GTG | CCT | TTG | TAA |
KJ473815_BtRs_BetaCoV_GX2013 | ATG | GAT | TTG | TTT | ATG | AGT | ATT | TTC | ACA | CTT | GGC | TCA | ATC | ACA | CGT | CAA | CCG | AGT | AAG | ATT | GAA | AAT | GCT | TCT | CCT | GCA | AGT | ACT | GTT | CAT | GCT | ACT | GCA | ACG | ATA | CCG | CTA | CAA | GCC | ACA | CTC | CCT | TTC | GGA | TGG | CTT | GTT | GTT | GGC | GTT | GCA | CTT | CTT | TCT | GTT | TTT | CAA | AGC | GCT | TCC | AAA | GTA | ATT | GCG | CTT | CAC | ACA | AGG | TGG | CAA | CTC | GCC | TTA | TAT | AAA | GGC | GTT | CAA | TTT | GTT | TGT | AAT | TTG | CTG | CTG | CTC | TTC | GTT | ACA | ATC | TAC | TCA | CAC | CTT | TTA | TTG | CTA | GCT | GCT | GGC | ATG | GAA | GTA | CAA | TTC | TTG | TAC | ATC | TAT | GCC | CTT | ATT | TAC | ATC | CTG | CAA | ATT | GTA | AGT | TTT | TGT | AGA | TTT | GTC | ATG | AGA | TGC | TGG | CTG | TGC | TGG | AAG | TGC | AGA | TCC | AAA | AAT | CCA | TTA | CTT | TAT | GAT | GCT | AAC | TAT | TTT | GTA | TGT | TGG | CAC | ACT | AAT | AAC | TAT | GAC | TAC | TGT | ATA | CCA | TAC | AAC | GGT | GTC | ACA | GAT | ACA | GTT | GTC | ATC | ACC | TCA | GGT | GAT | GGA | ATA | AAT | GAG | CCA | AAA | CTA | AAA | GAA | GAC | TAT | CAA | ATT | GGT | GGT | TAT | TCT | GAG | GAT | TGG | CAT | TCA | GGT | GTT | AAA | GAC | TAT | GTA | GTA | ATA | CAT | GGC | TAT | TTC | ACC | GAA | GTT | TAT | TAC | CAG | CTT | GAA | TCG | ACT | CAA | TTG | TCG | ACT | GAT | ACT | GGT | GCT | GAA | AAT | GCT | ACA | TTC | TTC | ATC | TAT | AGC | AAG | CTT | GTT | AAA | GAT | GT- | --A | GAT | CAT | GTG | CAA | ATA | CAC | ACA | ATC | GAC | GGC | TCT | TCG | GGA | GTT | GTA | AAT | CCA | GCA | ATG | GAT | CCA | ATT | TAT | GAT | GAG | CCG | ACG | ACG | ACT | ACT | AGC | GTG | CCT | TTG | TAA |
KF569996_Rhinolophus_affinis_CoV_LYRa11 | ATG | GAT | TTG | TTT | ATG | AGA | ATT | TTT | ACT | CTT | GGA | TCA | ATT | ACT | GCA | CAA | CCG | GGA | AAA | ATT | GAC | AAT | GCT | TCT | CCT | GCA | AGT | ACT | GTT | CAT | GCT | ACA | GCA | ACG | ATA | CCG | TTA | CAA | GCC | ACA | CTC | CCT | TTC | GGA | TGG | CTT | GTT | ATT | GGC | GTT | GCA | TTT | CTT | GCT | GTT | TTT | CAG | AGC | GCT | ACC | AAA | ATA | ATC | GCG | CTC | AAT | AAG | AGA | TGG | CAG | CTA | GCC | CTT | TAC | AAG | GGT | TTC | CAG | TTC | ATT | TGT | AAT | CTG | CTG | CTG | CTA | TTT | GTT | ACA | ATC | TAT | TCA | CAT | CTT | TTG | CTT | GTT | GCT | GCA | GGT | ATG | GAA | GCG | CAA | TTT | TTG | TAC | CTC | TAT | GCC | TTG | ATA | TAT | TTT | CTG | CAA | TGC | ATC | AAT | GCG | TGC | AGA | ATT | ATC | ATG | AGA | TGC | TGG | CTG | TGC | TGG | AAG | TGC | AGA | TCC | AAG | AAT | CCA | TTA | CTT | TAT | GAT | GCT | AAC | TAC | TTT | GTT | TGT | TGG | CAT | ACC | AAT | TGT | TAT | GAC | TAC | TGT | ATA | CCT | TAC | AAC | AGT | GTC | ACA | GAT | ACA | ATT | GTC | CTC | ACA | TCC | AGT | GAC | GGA | ACA | AAT | GTG | CCA | AAA | CTA | AAG | GAA | GAC | TAC | CAA | ATA | GGT | GGT | TAT | TCT | GAA | GAC | TGG | CAC | TCA | GGT | GTG | AAA | GAC | TAT | GTA | GTA | ATA | CAT | GGT | TAT | TTC | ACT | GAA | ATC | TAC | TAC | CAG | CTC | GAA | TCG | ACT | CAA | TTG | TCG | ACA | GAC | ACT | GGT | GCT | GAA | AAT | GCT | ACA | TTC | TTC | ATC | TAT | AGC | AAA | CTT | GTT | AAA | GAT | GC- | --A | GAT | CAT | GTG | CAA | ATA | CAC | ACA | ATC | GAC | GGC | TCT | TCA | GGA | GTT | GTA | AAT | CCA | GCA | ATG | GAT | CCA | ATT | TAC | GAT | GAG | CCG | ACG | ACG | ACT | ACT | AGC | GTG | CCT | TTG | TAA |
JX993988_Bat_CoV_Cp_Yunnan2011 | ATG | GAT | TTG | TTT | ATG | AGT | ATT | TTC | ACA | CTT | GGA | TCA | ATC | ACT | CGT | CAA | CCA | GGT | AAG | ATT | GAA | AAT | GCT | TTT | CCT | GCA | AGT | ACT | GTT | CAT | GCT | ACT | GCA | ACG | ATA | CCG | CTA | CAA | GCC | TCA | CTC | CCT | TTC | GGA | TGG | CTT | GTT | GTT | GGT | GTT | GCA | CTT | CTT | GCT | GTT | TTT | CAA | AGC | GCT | TCC | AAA | GTG | ATT | GCG | CTT | CAT | AAG | AGG | TGG | CAG | CTC | GCT | CTG | TAT | AAA | GGC | ATT | CAG | CTT | GTT | TGC | AAT | TTG | CTG | CTA | CTC | TTT | GTA | ACA | ATT | TAC | TCA | CAC | CTT | CTA | CTC | TTA | GCT | GCT | GGC | ATG | GAG | GCA | CAA | TTT | TCG | TAC | ATC | TAT | GCT | CTG | ATT | TAT | ATT | CTG | CAA | GTT | GTC | AGC | TTC | TGC | AGA | TTT | ATT | ATG | AGA | TGC | TGG | CTT | TGC | TGG | AAG | TGC | AAA | TCC | AAA | AAC | CCA | TTA | CTT | TAT | GAT | GTC | AAC | TAC | TTT | GTT | TGC | TGG | CAT | ACA | CAC | AAC | TAT | GAC | TAC | TGT | ATA | CCA | TAT | AAC | AGT | GTC | ACA | GAT | ACA | ATA | GTC | GTC | ACT | GCA | GGT | GAC | GGC | ATT | TCA | ACA | CCA | AAA | CTC | AAA | GAA | GAC | TAC | CAA | ATT | GGC | GGT | TAT | TCT | GAG | GAT | TGG | CAC | TCA | GGT | GTT | AAA | GAC | TAT | GTC | GTT | GTA | CAT | GGC | TAT | TTC | ACT | GAA | GTT | TAT | TAC | CAG | CTT | GAG | TCT | ACA | CAA | ATT | ACT | ACA | GAC | ACT | GGT | ATA | GAA | AAT | GCT | ACA | TTC | TTC | ATC | TTT | AAC | AAG | CTT | GTT | AAA | GAT | CC- | --A | CCG | AAT | GTG | CAA | ATA | CAC | ACA | ATC | GAC | GGC | TCT | TCA | GGA | GTT | GTA | AAT | CCA | GCA | ATG | GAT | CCA | ATT | TAT | GAT | GAG | CCG | ACG | ACG | ACT | ACT | AGC | GTG | CCT | TTG | TAA |
MK211374_CoV_BtRl_BetaCoV_SC2018 | ATG | GAT | TTG | TTT | ATG | AGT | ATT | TTC | ACG | CTT | GGA | TCA | ATC | ACA | CGT | CAA | CCG | AGT | AAG | ATT | GAA | AAT | GCT | TCT | CCT | GCA | AGT | ACT | GTT | CAT | GCT | ACT | GCA | ACG | ATA | CCG | CTA | CAA | GCC | TCA | CTC | CCT | TTC | AGA | TGG | CTT | GTT | GTT | GGC | GTT | GCA | CTT | TTT | GCT | GTT | CTT | CAA | AGC | GCT | TCC | AAA | GTG | ATT | GCG | CTT | CAT | AAG | AGG | TGG | CAG | CTC | AAC | CTG | TAT | AAA | GGC | TTT | CAT | CTT | GTT | TGC | AAT | TTG | CTG | CTA | CTT | TTT | GTG | ACG | ATT | TAC | TCA | CAT | CTT | CTA | CTT | TTG | GCT | GCT | GGC | ATG | GAG | GCA | CAA | TTT | TTG | TAC | ATC | TAT | GCT | CTG | ATT | TAT | ATT | CTG | CAA | GTT | GTG | AGC | TTC | TGC | AGA | TTT | ATT | ATG | AGA | TGC | TGG | CTT | TGC | TGG | AAG | TGC | AAA | TCC | AAA | AAC | CCA | TTA | CTC | TAT | GAT | GCC | AAC | TAC | TTT | GTT | TGC | TGG | CAT | ACA | CAT | AAC | TAT | GAC | TAC | TGT | ATA | CCA | TAC | AAC | AGT | GTC | ACA | GAT | ACA | ATT | GTC | GTT | ACT | GCA | GGT | GAC | GGC | ATT | TCA | ACA | CCA | AAA | CTC | AAA | GAA | GAC | TAC | CAA | ATT | GGT | GGT | TAT | GCT | GAG | GAT | TGG | CAC | TCA | GGT | GTT | AAA | GAC | TAT | GTC | GTT | GTA | CAT | GGC | TAT | TTC | ACC | GAA | GTT | TAC | TAC | CAG | CTT | GAG | TCT | ACA | CAA | ATT | ACT | ACA | GAC | ACT | GGT | ATT | GAA | AAT | GCT | ACA | TTC | TTC | ATC | TTT | AAC | AAG | CTT | GTT | AAA | GAT | CC- | --A | CCG | AAT | GTG | CAA | TTA | CAC | ACA | ATC | GAC | GGC | TCT | TCA | GGA | GTT | GTA | AAT | CCA | GCA | ATG | GAT | CCA | ATT | TAT | GAT | GAG | CCG | ACG | ACG | ACT | ACT | AGC | GTG | CCT | TTG | TAA |
KJ473814_BtRs_BetaCoV_HuB2013 | ATG | GAT | TTG | TTT | ATG | AGC | ATT | TTC | ACA | TTG | GGA | GCA | ATC | ACA | CGC | CAA | CCA | GCG | AAA | ATT | GAA | AAT | GCT | TCT | CCT | GCA | AGT | ACT | GTT | CAT | GCT | ACA | GCA | ACG | ATA | CCG | CTA | CAA | GCC | TCA | CTC | CCT | TTC | GGA | TGG | CTT | GTT | GTT | GGC | GTT | GCA | CTT | CTT | GCT | GTT | TTT | CAA | AGC | GCT | TCC | AAA | GTG | ATT | GCG | CTT | CAT | AAG | AGG | TGG | CAG | CTT | GCC | TTG | TAT | AAA | GGC | ATT | CAG | TTT | GTT | TGC | AAC | CTG | CTG | CTA | CTT | TTT | GTG | ACA | ATT | TAC | TCA | CAT | CTT | CTA | CTG | TTA | GCT | GCT | GGC | ATG | GAG | GCA | CAA | TTT | TTG | TAC | ATC | TAT | GCC | CTG | ATT | TAC | ATT | CTG | CAA | ATC | CTA | AGC | TTT | TGC | AGA | TTC | ATC | ATG | AGA | TGC | TGG | CTG | TGC | TGG | AAG | TGC | AGA | TCC | AAA | AAT | CCG | TTG | CTC | TAT | GAT | GCT | AAC | TAC | TTT | GTA | TGT | TGG | CAC | ACC | AAT | TGC | TTT | GAT | TAC | TGT | ATA | CCA | TAC | AAC | AGT | ATC | ACT | GAC | ACA | ATT | GTC | CTC | ACG | TCA | GGT | GAT | GGA | ACT | ACT | CAG | CCA | AAA | CTA | AAA | GAA | GAC | TAC | CAA | ATT | GGT | GGT | TAT | TCC | GAG | TAT | TGG | CAT | TCA | GGT | GTA | AAG | GAC | TAT | GTA | GTA | ATA | CAT | GGT | TAT | TTC | ACT | GAA | ATC | TAC | TAC | CAG | TTA | GAA | TCG | ACA | CAA | CTA | TCG | ACT | GAC | ACT | GGT | GCT | GAA | AAT | GCT | ACA | TTC | TTC | ATC | TAT | AGC | AAG | CTT | GTT | AAA | GAT | GT- | --G | GAC | CAT | GTA | CAA | ATA | CAC | ACA | ATC | GAC | GGC | TCT | TCA | GGA | GTT | GTA | AAT | CCA | GTA | ATG | GAT | CCA | ATT | TAT | GAT | GAG | CCG | ACG | ACG | ACT | ACT | AGC | GTG | CCT | TTG | TAA |
DQ412043_Bat_SARS_CoV_Rm1 | ATG | GAT | TTG | TTT | ATG | AGC | ATT | TTC | ACA | TTG | GGA | GCA | ATC | ACA | CGC | CAA | CCA | GCG | AAA | GTT | GAA | AAT | GCT | TCT | CCT | GCA | AGT | ACT | GTT | CAT | GCT | ACA | GCA | ACG | ATA | CCG | CTA | CAA | GCC | TCA | CTC | CCT | TTC | GGA | TGG | CTT | GTT | GTT | GGC | GTT | GCA | CTT | CTT | GCT | GTT | TTT | CAA | AGC | GCT | TCC | AAA | GTG | ATT | GCG | CTT | CAT | AAG | AGG | TGG | CAG | CTT | GCC | TTG | TAT | AAA | GGC | ATT | CAG | TTT | GTT | TGC | AAT | CTG | CTG | CTA | CTT | TTT | GTG | ACA | ATT | TAC | TCA | CAT | CTT | CTA | CTG | TTA | GCT | GCT | GGC | ATG | GAG | GCA | CAA | TTT | TTG | TAC | ATC | TAT | GCC | CTG | ATT | TAC | ATT | CTG | CAA | ATC | GTA | AGC | TTC | TGC | AGA | TTT | ATC | ATG | AGG | TGC | TGG | CTG | TGC | TGG | AAG | TGC | AGA | TCC | AAA | AAT | CCA | TTA | CTC | TAT | GAT | GCT | AAC | TAT | TTC | GTA | TGT | TGG | CAC | ACC | AAT | TGC | TTT | GAC | TAC | TGT | ATA | CCA | TAC | AAC | AGT | ATC | ACT | GAC | ACA | ATT | GTC | CTC | ACG | TCA | GGT | GAC | GGA | ACT | ACT | CAG | CCA | AAA | CTT | AAA | GAA | GAC | TAC | CAA | ATT | GGT | GGT | TAT | TCC | GAG | GAT | TGG | CAT | TCA | GGT | GTA | AAG | GAC | TAT | GTA | GTA | ATA | CAT | GGT | TAT | TTC | ACT | GAA | ATC | TAC | TAC | CAG | TTA | GAA | TCG | ACA | CAA | CTA | TCG | ACC | GAC | ACT | GGT | GCT | GAA | AAT | GCT | ACA | TTC | TTC | ATC | TAT | AGC | AAG | CTT | GTT | AAA | GAT | GT- | --G | GAC | CAT | GTA | CAA | ATA | CAC | ACA | ATC | GAC | GGC | TCT | TCA | GGA | GTT | GTA | AAT | CCA | GCA | ATG | GAT | CCA | ATT | TAT | GAT | GAG | CCG | ACG | ACG | ACT | ACT | AGC | GTG | CCT | TTG | TAA |
KY938558_Bat_CoV_strain_16BO133 | ATG | GAT | TTG | TTT | ATG | AGT | ATT | TTC | ACA | CTT | GGA | TCA | ATC | ACA | CGT | CAA | CCA | AGT | AAG | ATT | GAA | AAT | GCT | TTT | CTT | GCA | AGT | ACT | GTT | CAT | GCT | ACT | GCA | ACG | ATA | CCG | CTA | CAA | GCC | TCA | TTC | TCT | TTC | CGA | TGG | CTT | GTT | ATT | GGC | GTT | GCA | CTT | CTT | GCT | GTT | TTT | CAA | AGC | GCT | TCC | AAG | GTA | ATT | GCG | CTT | CAT | AAG | AAG | TGG | CAG | CTT | GCC | TTA | AAC | AAA | GGC | TTT | CAA | TTA | GTT | TGT | AAC | TTG | CTG | CTA | CTC | TTT | GTG | ACA | ATT | TAT | TCA | CAT | TTT | CTA | CTT | TTA | GCT | GCT | GGC | ATT | GAG | GTG | CAA | TTC | TTG | TAC | ATC | TAT | GCT | TTG | ATT | TAT | ATT | CTG | CAA | ACT | TTA | AGC | TTT | TGC | AGA | TTT | ATC | ATG | AGA | TGC | TGG | CTC | TGT | TGG | AAG | TGC | AAA | TCC | AAG | AAT | CCA | TTA | TTA | TAT | GAT | GCC | AAC | TAC | TTT | GTT | TGC | TGG | CAT | ACA | TAT | AAT | TAT | GAC | TAC | TGT | ATA | CCA | TAC | AAC | AGT | GTC | ACA | GAT | ACA | ATC | GTC | GTT | ACT | GCA | GGT | GAC | GGC | ATT | TCA | ACA | CCA | GAA | GTC | AAA | GAA | TAC | TAC | CAA | ATT | GGT | GGT | TAT | TCT | GAG | GAT | TGG | CAT | TCA | GGT | GTT | AAA | GAC | TAT | GTC | GTT | GTA | CAT | GGC | TAT | TTC | GCC | GAA | GTT | CAC | TAC | CAG | CTT | GAG | TCT | ACA | CAA | ATT | ACT | ACA | GAC | ACT | GGT | ATT | CAA | AAC | GCT | ACA | TTC | TTC | ATC | TTT | AAC | AAG | CTT | GTT | AAA | GAT | CC- | --G | CCG | AAT | GTG | CAA | ATA | CAC | ACA | ATC | GAC | GGC | TCT | TCA | GGA | GTT | GTA | AAT | CCA | GCA | ATG | GAC | CCA | ATT | TAT | GAT | GAG | CCG | ACG | ACG | ACT | ACT | AGC | GTG | CCT | TTG | TAA |
DQ412042_Bat_SARS_CoV_Rf1 | ATG | GAT | TTG | TTT | ATG | AGT | ATT | TTC | ACA | CTT | GGA | TCA | ATC | ACA | CGT | CAA | CCA | AGT | AAG | ATT | GAA | AAT | GCT | TTT | CTT | GCA | AGT | ACT | GTT | CAT | GCT | ACT | GCA | ACG | ATA | CCG | CTA | CAA | GCC | TCA | TTC | TCT | TTC | CGA | TGG | CTT | GTT | ATT | GGC | GTT | GCA | CTT | CTT | GCT | GTT | TTT | CAA | AGC | GCT | TCC | AAA | GTA | ATT | GCG | CTT | CAT | AAG | AAG | TGG | CAG | CTT | GCC | TTA | TAC | AAA | GGC | ATC | CAA | TTA | GTT | TGT | AAC | TTG | CTG | CTA | CTT | TTT | GTG | ACA | ATT | TAT | TCA | CAT | TTT | CTA | CTT | TTA | GCT | GCT | GGC | ATT | GAG | GTA | CAA | TTT | TTG | TAC | ATC | TAT | GCT | TTG | ATT | TAT | ATT | CTG | CAA | ATT | TTA | AGC | TTT | TGC | AGA | TTT | GTC | ATG | AGA | TGC | TGG | CTT | TGT | TGG | AAG | TGC | AAA | TCC | AAG | AAT | CCA | TTA | TTA | TAT | GAT | GCC | AAC | TAC | TTT | GTT | TGC | TGG | CAT | ACA | TAT | AAT | TAT | GAC | TAC | TGT | ATA | CCA | TAC | AAC | AGT | GTC | ACA | GAT | ACA | ATC | GTC | GTT | ACT | TCA | GGT | GAC | GGC | ATT | TCA | ACA | CCA | GAA | CTC | AAA | GAA | GAC | TAC | CAA | ATT | GGT | GGT | TAT | TCT | GAG | GAT | TGG | CAC | TCA | GGT | GTT | AAA | GAC | TAT | GTC | GTT | GTA | CAT | GGC | TAT | TTC | ACC | GAA | GTT | CAC | TAC | CAG | CTT | GAG | TCT | ACA | CAA | ATT | ACT | ACA | GAC | ACT | GGT | ATT | CAA | AAC | GCT | ACA | TTC | TTC | ATC | TTT | AAC | AAG | CTT | GTT | AAG | GAT | CC- | --G | CCG | AAT | GTG | CAA | ATA | CAC | ACA | ATC | GAC | GGC | TCT | TCA | GGA | GTT | GTA | AAT | CCA | GCA | ATG | GAC | CCA | ATT | TAT | GAT | GAG | CCG | ACG | ACG | ACT | ACT | AGC | GTG | CCT | TTG | TAA |
DQ648856_Bat_CoV_BtCoV_273_2005 | ATG | GAT | TTG | TTT | ATG | AGT | ATT | TTC | ACA | CTT | GGA | TCA | ATC | ACA | CGT | CAA | CCA | AGT | AAG | ATT | GAA | AAT | GCT | TTT | CTT | GCA | AGT | ACT | GTT | CAT | GCT | ACT | GCA | ACG | ATA | CCG | CTA | CAA | GCC | TCA | TTC | TCT | TTC | CGA | TGG | CTT | GTT | ATT | GGC | GTT | GCA | CTT | CTT | GCT | GTT | TTT | CAA | AGC | GCT | TCC | AAA | GTA | ATT | GCG | CTT | CAT | AAG | AAG | TGG | CAG | CTT | GCC | TTA | TAC | AAA | GGC | ATC | CAA | TTA | GTT | TGT | AAC | TTG | CTG | CTA | CTC | TTT | GTG | ACA | ATT | TAT | TCA | CAT | TTT | CTA | CTT | TTA | GCT | GCT | GGC | ATT | GAG | GTA | CAA | TTT | TTG | TAC | ATC | TAT | GCT | TTG | ATT | TAT | ATT | CTG | CAA | ATT | TTA | AGC | TTT | TGC | AGA | TTT | GTC | ATG | AGA | TGC | TGG | CTT | TGT | TGG | AAG | TGC | AAA | TCC | AAG | AAT | CCA | TTA | TTA | TAT | GAT | GCC | AAC | TAC | TTT | GTT | TGC | TGG | CAT | ACA | TAT | AAT | TAT | GAC | TAC | TGT | ATA | CCA | TAC | AAC | AGT | GTC | ACA | GAT | ACA | ATC | GTC | GTT | ACT | TCA | GGT | GAC | GGC | ATT | TCA | ACA | CCA | GAA | CTC | AAA | GAA | GAC | TAC | CAA | ATT | GGT | GGT | TAT | TCT | GAG | GAT | TGG | CAC | TCA | GGT | GTT | AAA | GAC | TAT | GTC | GTT | GTA | CAT | GGC | TAT | TTC | ACC | GAA | GTT | CAC | TAC | CAG | CTT | GAG | TCT | ACA | CAA | ATT | ACT | ACA | GAC | ACT | GGT | ATT | CAA | AAC | GCT | ACA | TTC | TTC | ATC | TTT | AAC | AAG | CTT | GTT | AAG | GAT | CC- | --G | CCG | AAT | GTG | CAA | ATA | CAC | ACA | ATC | GAC | GGC | TCT | TCA | GGA | GTT | GTA | AAT | CCA | GCA | ATG | GAC | CCA | ATT | TAT | GAT | GAG | CCG | ACG | ACG | ACT | ACT | AGC | GTG | CCT | TTG | TAA |
KJ473812_BtRf_BetaCoV_HeB2013 | ATG | GAT | TTG | TTT | ATG | AGT | ATT | TTC | ACA | CTT | GGA | TCA | ATT | ACA | CGT | CAA | CCA | AGT | AAG | ATT | GAA | AAT | GCT | TTT | CTT | GCA | AGT | ACT | GTT | CAT | GCT | ACT | GCA | ACG | ATA | CCG | CTA | CAA | GCC | TCA | CTC | TCT | TTC | CGA | TGG | CTT | GTT | GCT | GGC | GTT | GCA | CTT | CTT | GCT | GTT | TTT | CAA | AGC | GCT | TCC | AAA | GTG | ATT | GCG | CTT | CAT | AAG | AGG | TGG | CAA | CTT | GCC | TTA | CAC | AAA | GGC | ATC | CAA | TTT | GTT | TGC | AAC | TTG | CTG | CTA | CTC | TTT | GTG | ACA | ATT | TAT | TCA | CAT | CTT | CTA | CTT | TTA | GCT | GCT | GGC | ATG | GAG | GTA | CAA | TTT | TTG | TAC | ATC | TAT | GCT | TTG | ATT | TAT | ATT | CTG | CAA | ACT | TTA | AGT | TTT | TGC | AGA | TTT | ATC | ATG | AGA | TGC | TGG | CTT | TGT | TGG | AAG | TGC | AAA | TCC | AAG | AAT | CCA | TTA | TTA | TAT | GAT | GCC | AAC | TAC | TTT | GTT | TGC | TGG | CAT | ACA | TAT | AAT | TAT | GAC | TAC | TGT | ATA | CCA | TAC | AAC | AGT | GTC | ACA | GAT | ACA | ATC | GTC | GTT | ACT | TCA | GGT | GAC | GGC | ATT | TCA | ACA | CCA | GAA | CTC | AAA | GAA | GAC | TAC | CAA | ATT | GGT | GGT | TAT | TCT | GAG | GAT | TGG | CAT | TCA | GGT | GTT | AAA | GAC | TAT | GTC | GTT | GTA | CAT | GGC | TAT | TTC | ACC | GAA | GTT | CAC | TAC | CAG | CTT | GAG | TCT | ACA | CAA | ATT | ACT | ACA | GAC | ACT | GGT | ATT | CAA | AAC | GCT | ACA | TTC | TTC | ATC | TTT | AAC | AAG | CTT | GTT | AAA | GGT | CC- | --G | CCG | AAT | GTG | CAA | ATA | CAC | ACA | ATC | GAC | GGC | TCT | TCA | GGA | GTT | GTA | AAT | CCA | GCA | ATG | GAC | CCA | ATT | TAT | GAT | GAG | CCG | ACG | ACG | ACT | ACT | AGC | GTG | CCT | TTG | TAA |
KY770860_Bat_CoV_Jiyuan_84 | ATG | GAT | TTG | TTT | ATG | AGT | ATT | TTC | ACA | CTT | GGA | TCA | ATT | ACA | CGT | CAA | CCA | AGT | AAG | ATT | GAA | AAT | GCT | TTT | CTT | GCA | AGT | ACT | GTT | CAT | GCT | ACT | GCA | ACG | ATA | CCG | CTA | CAA | GCC | TCA | CTC | TCT | TTC | CGA | TGG | CTT | GTT | GCT | GGC | GTT | GCA | CTT | CTT | GCT | GTT | TTT | CAA | AGC | GCT | TCC | AAA | GTG | ATT | GCG | CTT | CAT | AAG | AAG | TGG | CAA | CTT | GCC | TTA | CAC | AAA | GGC | ATC | CAA | TTT | GTT | TGC | AAC | TTG | CTG | CTA | CTC | TTT | GTG | ACA | ATT | TAT | TCA | CAT | CTT | CTA | CTT | TTA | GCT | GCT | GGC | ATG | GAG | GTA | CAA | TTT | TTG | TAC | ATC | TAT | GCT | TTG | ATT | TAT | ATT | CTG | CAA | ACT | TTA | AGT | TTT | TGC | AGA | TTT | ATC | ATG | AGA | TGC | TGG | CTT | TGT | TGG | AAG | TGC | AAA | TCC | AAG | AAT | CCA | TTA | TTA | TAT | GAT | GCC | AAC | TAC | TTT | GTT | TGC | TGG | CAT | ACA | TAT | AAT | TAT | GAC | TAC | TGT | ATA | CCA | TAC | AAC | AGT | GTC | ACA | GAT | ACA | ATC | GTC | GTT | ACT | TCA | GGT | GAC | GGC | ATT | TCA | ACA | CCA | GAA | CTC | AAA | GAA | GAC | TAC | CAA | ATT | GGT | GGT | TAT | TCT | GAG | GAT | TGG | CAT | TCA | GGT | GTT | AAA | GAC | TAT | GTC | GTT | GTA | CAT | GGC | TAT | TTC | ACC | GAA | GTT | CAC | TAC | CAG | CTT | GAG | TCT | ACA | CAA | ATT | ACT | ACA | GAC | ACT | GGT | ATT | CAA | AAC | GCT | ACA | TTC | TTC | ATC | TTT | AAC | AAG | CTT | GTT | AAA | GGT | CC- | --G | CCG | AAT | GTG | CAA | ATA | CAC | ACA | ATC | GAC | GGC | TCT | TCA | GGA | GTT | GTA | AAT | CCA | GCA | ATG | GAC | CCA | ATT | TAT | GAT | GAG | CCG | ACG | ACG | ACT | ACT | AGC | GTG | CCT | TTG | TAA |
JX993987_Bat_CoV_Rp_Shaanxi2011 | ATG | GAT | TTG | TTT | ATG | AGC | ATT | TTC | ACA | CTA | GGA | GCA | ATC | ACA | CGC | CAA | CCA | GCG | AAA | ATT | GAA | AAT | GCT | TCT | CCT | GCA | AGT | ACT | GTT | CAT | GCT | ACA | GCA | ACG | ATA | CCG | CTA | CAA | GCC | TCA | CTC | CCA | TTC | GGA | TGG | CTT | GTT | GTT | GGC | GTT | GCA | CTT | CTT | GCT | GTT | TTT | CAA | AGC | GCT | TCC | AAA | GTG | ATT | GCG | CTC | CAT | AAG | AGA | TGG | CAG | CTT | GCC | TTG | TAC | AAA | GGC | ATT | CAA | CTC | GTT | TGC | AAT | TTG | CTG | CTA | CTC | TTT | GTC | ACA | ATT | TAT | TCA | CAC | CTA | TTA | CTG | TTA | GCT | GCT | GGC | ATG | GAG | GCA | CAA | TTT | TTG | TAC | ATC | TAT | GCC | CTG | ATT | TAC | ATT | CTG | CAA | ATC | GTA | AGT | TTT | TGC | AGA | TTC | ATC | ATG | AGA | TGC | TGG | CTG | TGC | TGG | AAG | TGC | AGA | TCC | AAA | AAT | CCA | TTA | CTC | TAT | GAT | GCC | AAC | TAC | TTT | GTA | TGT | TGG | CAC | ACG | AAT | TGC | TTT | GAT | TAC | TGT | ATA | CCA | TAC | AAC | AGT | ATC | ACT | GAC | ACT | ATT | GTC | CTC | ACC | TCA | GGT | GAT | GGA | ACA | AAT | CAG | CCA | AAA | CTT | AAA | GAA | GAC | TAC | CAA | ATT | GGT | GGT | TAT | TCT | GAG | GAT | TGG | CAT | TCA | GGT | ATT | AAA | GAC | TAT | GTA | GTA | ATA | CAT | GGC | TAC | TTT | ACT | GAA | GTC | TAT | TAC | CAG | TTG | GAA | ACG | ACA | CAA | TTG | TCG | CCT | GAA | ACT | GGT | GTT | GAA | AAT | GCT | ACA | TTC | TTC | ATC | TTT | AGC | AAA | CTT | GTT | AAA | GCT | GT- | --A | GAC | CAT | GTA | CAA | ATA | CAC | ACA | ATC | GAC | GGC | TCT | TCT | GGA | GTT | ATA | AAT | CCA | GCA | ATG | GAT | CCA | ATC | TAT | GAT | GAG | CCG | ACG | ACG | ACT | ACT | AGC | GTG | CCT | TTG | TAA |
GQ153542_Bat_SARS_CoV_HKU3_7 | ATG | GAT | TTG | TTT | ATG | AGC | ATT | TTT | ACA | TTG | GGA | GCA | ATC | ACG | CGC | AAT | CCA | GCG | AAA | ATT | GAA | AAT | GCT | TCT | CCT | GCA | AGT | ACT | GTT | CAT | GCT | ACT | GCA | ACG | ATA | CCG | CTG | CAA | GCC | ACA | CTC | CCC | TTC | GGA | TGG | CTT | GTT | GTT | GGC | GTT | GCA | CTT | CTT | GCT | GTT | TTT | CAA | AGC | GCT | TCC | AAA | GTA | ATT | GCG | CTT | CAT | AGA | AGG | TGG | CAA | CTC | GCC | TTA | TAT | AAA | GGC | GTT | CAA | TTT | GTA | TGT | AAT | TTG | CTG | CTG | CTC | TTT | GTG | ACA | ATT | TAC | TCA | CAC | CTT | TTA | TTG | CTA | GCT | GCC | GGC | ATG | GAA | GCA | CAA | TTC | TTG | TAC | ATC | TAT | GCC | CTG | ATT | TAC | ATT | CTG | CAA | ATT | GCA | AGT | TTT | TGT | AGA | TTT | GTC | ATG | AGA | TGC | TGG | CTG | TGC | TGG | AAG | TGC | AGA | TCC | AAA | AAT | CCA | TTA | CTT | TAT | GAT | GCT | AAC | TAT | TTT | GTA | TGT | TGG | CAC | ACT | AAT | AAC | TAT | GAT | TAC | TGT | ATA | CCA | TAC | AAC | AGT | GTC | ACA | GAT | ACA | GTT | GTC | ATC | ACC | TCA | GGT | GAT | GGA | ACA | AAT | CAG | CCA | AAA | CTA | AAA | GAA | GAC | TAT | CAA | ATT | GGT | GGT | TAT | TCT | GAG | GAT | TGG | CAT | TCA | GGT | GTT | AAA | GAC | TAT | GTA | GTA | ATA | CAT | GGC | TAT | TCC | ACC | GAA | GTT | TAT | TAC | CAG | CTT | GAA | TCG | ACT | CAA | TTG | TCG | ACT | GAG | ACT | GGT | GCT | GAA | AAT | GCT | ACA | TTC | TTC | ATC | TAT | AGC | AAG | CTT | GTT | AAA | GAT | GT- | --A | GAT | CAT | GTG | CAA | ATA | CAC | ACA | ATC | GAC | GGC | TCT | TCA | GGA | GTT | GTA | AAT | CCA | GCA | ATG | GAT | CCA | ATT | TAT | GAT | GAG | CCG | ACG | ACG | ACT | ACT | AGC | GTG | CCT | TTG | TAA |
DQ022305_Bat_SARS_CoV_HKU3_1 | ATG | GAT | TTG | TTT | ATG | AGC | ATT | TTC | ACA | TTG | GGA | GCA | ATC | ACG | CGC | AAT | CCA | GCG | AAA | ATT | GAA | AAT | GCT | TCT | CCT | GCA | AGT | ACT | GTT | CAT | GCT | ACT | GCA | ACG | ATA | CCA | CTA | CAA | GCC | ACA | TTC | CCT | TTC | GGA | TGG | CTT | ATT | GTT | GGC | GTT | GCA | CTT | CTT | GCT | GTT | TTT | CAA | AGC | GCT | TCT | AAA | GTA | ATT | GCG | CTT | CAT | AGA | AGG | TGG | CAG | CTC | GCC | TTA | TAT | AAA | GGC | GTT | CAA | CTT | GTA | TGT | AAT | ATG | CTG | CTG | CTT | TTT | GTG | ACA | ATT | TAC | TCA | CAC | CTT | CTA | CTT | CTA | GCT | GCT | TGC | ATG | GAA | GCA | CAA | TTC | TTG | TAC | ATC | TAT | GCC | CTG | ATT | TAT | ATC | TTG | CAA | ATT | GTA | AGT | TTT | TGT | AGA | TTT | ATC | ATG | AGA | TGC | TGG | CTG | TGC | TGG | AAG | TGC | AGA | TCC | AAA | AAT | CCA | TTA | CTC | TAT | GAT | GCT | AAC | TAT | TTT | GTA | TGT | TGG | CAT | ACT | AAT | AAC | TAT | GAC | TAC | TGT | ATA | CCA | TAC | AAC | AGT | GTC | ACA | GAT | ACA | GTT | GTC | ATC | ACC | TCA | GGT | GAT | GGA | ACA | AAT | CAG | CCA | AAA | CTA | AAA | GAA | GAC | TAT | CAA | ATT | GGT | GGT | TAT | TCT | GAG | GAT | TGG | CAT | TCA | GGT | GTT | AAA | GAC | TAT | GTA | GTA | ATA | TAT | GGC | TAT | TTC | ACC | GAA | GTT | TAT | TAC | CAG | CTT | GAA | TCG | ACT | CAA | TTG | TCG | ACT | GAT | ACT | GGT | GCT | GAA | AAT | GCT | ACA | TTC | TTC | ATC | TAT | AGC | AAG | CTT | GTT | AAA | GAT | GT- | --A | GAT | CAT | GTG | CAA | ATA | CAC | ACA | ATC | GAC | GGC | TCT | TCA | GGA | GTT | GTA | AAT | CCA | GCA | ATG | GAT | CCA | ATT | TAT | GAT | GAG | CCG | ACG | ACG | ACT | ACT | AGC | GTG | CCT | TTG | TAA |
GQ153547_Bat_SARS_CoV_HKU3_12 | ATG | GAT | TTG | TTT | ATG | AGC | ATT | TTC | ACA | TTG | GGA | GCA | ATC | ACG | CGC | AAT | CCA | GCG | AAA | ATT | GAA | AAT | GCT | TCT | CCT | GCA | AGT | ACT | GTT | CAT | GCT | ACT | GCA | ACG | ATA | CCA | CTA | CAA | GCC | ACA | TTC | CCT | TTC | GGA | TGG | CTT | ATT | GTT | GGC | GTT | GCA | CTT | CTT | GCT | GTT | TTT | CAA | AGC | GCT | TCT | AAA | GTA | ATT | GCG | CTT | CAT | AGA | AGG | TGG | CAG | CTC | GCC | TTA | TAT | AAA | GGC | GTT | CAA | CTT | GTA | TGT | AAT | ATG | CTG | CTG | CTT | TTT | GTG | ACA | ATT | TAC | TCA | CAC | CTT | CTA | CTT | CTA | GCT | GCT | GGC | ATG | GAA | GCA | CAA | TTC | TTG | TAC | ATC | TAT | GCC | CTG | ATT | TAT | ATC | TTG | CAA | ATT | GTA | AGT | TTT | TGT | AGA | TTT | ATC | ATG | AGA | TGC | TGG | CTG | TGC | TGG | AAG | TGC | AGA | TCC | AAA | AAT | CCA | TTA | CTC | TAT | GAT | GCT | AAC | TAT | TTT | GTA | TGT | TGG | CAT | ACT | AAT | AAC | TAT | GAC | TAC | TGT | ATA | CCA | TAC | AAC | AGT | GTC | ACA | GAT | ACA | GTT | GTC | ATC | ACC | TCA | GGT | GAT | GGA | ACA | AAT | CAG | CCA | AAA | CTA | AAA | GAA | GAC | TAT | CAA | ATT | GGT | GGT | TAT | TCT | GAG | GAT | TGG | CAT | TCA | GGT | GTT | AAA | GAC | TAT | GTA | GTA | ATA | TAT | GGC | TAT | TTC | ACC | GAA | GTT | TAT | TAC | CAG | CTT | GAA | TCG | ACT | CAA | TTG | TCG | ACT | GAT | ACT | GGT | GCT | GAA | AAT | GCT | ACA | TTC | TTC | ATC | TAT | AGC | AAG | CTT | GTT | AAA | GAT | GT- | --A | GAT | CAT | GTG | CAA | ATA | CAC | ACA | ATC | GAC | GGC | TCT | TCA | GGA | GTT | GTA | AAT | CCA | GCA | ATG | GAT | CCA | ATT | TAT | GAT | GAG | CCG | ACG | ACG | ACT | ACT | AGC | GTG | CCT | TTG | TAA |
KY352407_SARS_related_CoV_strain_BtKY72 | ATG | GAT | TTG | TTT | ATT | AGC | ATT | TTC | ACA | TTA | GGT | TCA | ATC | ACT | CGT | --- | --- | GGT | AGT | GTG | CAA | AAT | GCT | GTT | CCT | GCA | AAT | TCT | CTT | CAT | GCT | ACG | GCT | ACC | ATC | CCT | TTA | CAA | GCC | ACT | CTG | CCT | TTC | GGA | TGG | CTT | ATT | GTT | GGC | GTT | GCA | TTG | CTT | GCT | GTT | TTT | CAA | AAT | GCT | TCA | AAA | GTA | ATT | CCT | TTT | AAC | AGC | TTG | TGG | CAG | CGC | TGC | CTT | TAT | CAA | AGC | TTC | CAA | CTT | GTT | TGC | AGT | CTG | TTA | GTT | GGT | TTT | CTC | ACA | GTC | TAT | GTA | CAC | CTA | TTG | CTG | GCA | GCT | GCT | GGG | CTA | GAA | GCC | CCA | TTT | CTT | TAT | CTT | TTA | GCC | CTA | ATC | TAC | TTC | TTA | CAG | TGT | GTT | GTT | TTT | GGT | AGG | TTT | TTA | TTA | AGG | TGT | TGG | CTT | TGC | TGG | AAA | TGC | AAG | TCC | AAG | AAC | CCT | CTT | ATT | TAT | GAT | GCC | TCC | TAC | TTT | GTT | TGT | TGG | CAT | ACA | CAC | ACT | CAT | GAC | TAT | TGT | ATT | CCG | TAC | AAT | AGT | ATT | ACT | GAA | ACC | ATA | GTC | CTC | ACT | GCA | GGA | GAT | GGT | GTA | ACT | ATT | CCT | ATA | AAA | ACA | CAA | GAC | TAC | CAA | ATT | GGT | GGT | TTT | GTA | GAA | AAA | TGG | GAG | TCT | GGT | GTC | AAG | GAC | TAT | GTT | ACA | CTC | ATA | GGC | CTT | TTC | ACT | GAA | ATA | CAT | TAC | CAG | TTG | GAA | TCT | ACT | CAA | ATT | TCA | GCT | GAC | ACT | GGT | ATT | AAC | AAC | GCG | ACG | TTT | TTC | CTT | TTC | TCT | AAA | TAT | GAT | AGA | GAA | AG- | --T | GAG | AGC | GTC | CAA | GTT | CAC | ACA | ATC | GAC | GGC | TCA | TCA | GGA | GTT | GTA | AAT | --- | --- | --- | --- | CCA | ATT | TAT | GAT | GAG | CCA | ACG | CCG | ACT | ACT | AGC | GTG | CCT | CTC | TAA |
NC_014470_Bat_CoV_BM48_31_BGR_2008 | ATG | GAT | TTG | TTT | TTG | AAC | ATC | TTC | ACT | TTA | GGA | TCT | ATT | ACT | AGA | CAA | CCT | GGT | AAA | GTT | GAA | AAT | GTT | TCT | CCT | GCA | AGT | TCT | TTT | CAT | TCT | ACA | GCG | TCC | ATC | CCT | TTA | CAG | GCC | ACT | CTA | CCT | TTC | GGA | TGG | CTT | GTT | GTT | GGC | GTT | GCA | TTT | CTT | GCT | GTT | TTT | CAA | AGC | GCT | GCG | AAA | TTA | ATA | CCT | TTT | AAC | AGT | CTT | TGG | CAG | CGT | TGC | TTA | TAC | CAG | AGC | TTT | CAA | TTG | CTT | TGC | AAT | GTG | CTT | CTT | ATT | GCT | TTG | ACA | GTT | TAC | TCG | CAC | TTA | CTG | CTT | GTT | GCT | GCA | GGG | CTT | GAA | GCA | CCT | TTC | CTT | TAT | CTA | CTT | GCT | TTG | ATT | TAC | TTC | TTA | CAG | TGC | GTT | GTA | TTT | GGC | AGG | CTT | CTT | GTC | AGA | TGC | TGG | CTG | TGC | TGG | AAA | TGC | AAA | TCA | AAG | AAT | CCA | TTA | ATT | TAT | GAC | TCA | AAC | TAT | TTT | GTT | TGC | TGG | CAT | ACT | CAC | ACT | CAT | GAC | TAT | TGT | ATT | CCT | TAC | AAT | AGC | ATT | ACA | AAC | ACT | ATC | GTC | CTC | ACT | GCA | GGT | GAT | GGT | GTC | ACT | ATT | CCC | ATT | CGG | ACA | CAA | GAC | TAC | CAA | ATT | GGT | GGT | TAC | TTC | GAA | AAA | TGG | GAA | TCT | GGT | GTT | AAG | GAC | TAT | CTT | ACA | CTT | ATT | GGT | CCT | TTC | ACT | GAA | GTT | TAT | TAC | CAG | CTT | GAA | TCT | ACC | CAG | ATT | TCC | ACA | GAC | ACT | GGT | ATT | AAT | AAT | GCG | ACA | TTC | TTC | CTC | TTC | TCA | AAG | AAT | GAT | GAA | AGA | GAA | CAG | GAA | AGT | GTC | CAA | GTT | CAC | ACA | ATC | GAC | GGC | TCA | TCA | GGA | GTT | GTA | AAC | --- | --- | --- | --- | CCA | ATT | TAC | GAT | GAG | CCG | ACG | CCG | ACT | ACT | AGC | GTG | CCT | CTT | TAA |
ORF3a_protein