NC_045512_SARS_CoV_2_Wuhan_Hu_1_aa | M | F | V | F | L | V | L | L | P | L | V | S | S | Q | C | V | N | L | T | T | R | T | Q | L | P | P | A | Y | T | N | S | F | T | R | G | V | Y | Y | P | D | K | V | F | R | S | S | V | L | H | S | T | Q | D | L | F | L | P | F | F | S | N | V | T | W | F | H | A | I | H | V | S | G | T | N | G | T | K | R | F | D | N | P | V | L | P | F | N | D | G | V | Y | F | A | S | T | E | K | S | N | I | I | R | G | W | I | F | G | T | T | L | D | S | K | T | Q | S | L | L | I | V | N | N | A | T | N | V | V | I | K | V | C | E | F | Q | F | C | N | D | P | F | L | G | V | Y | Y | H | K | N | N | K | S | W | M | E | S | E | F | R | V | Y | S | S | A | N | N | C | T | F | E | Y | V | S | Q | P | F | L | M | D | L | E | G | K | Q | G | N | F | K | N | L | R | E | F | V | F | K | N | I | D | G | Y | F | K | I | Y | S | K | H | T | P | I | N | L | V | R | D | L | P | Q | G | F | S | A | L | E | P | L | V | D | L | P | I | G | I | N | I | T | R | F | Q | T | L | L | A | L | H | R | S | Y | L | T | P | G | D | S | S | S | G | W | T | A | G | A | A | A | Y | Y | V | G | Y | L | Q | P | R | T | F | L | L | K | Y | N | E | N | G | T | I | T | D | A | V | D | C | A | L | D | P | L | S | E | T | K | C | T | L | K | S | F | T | V | E | K | G | I | Y | Q | T | S | N | F | R | V | Q | P | T | E | S | I | V | R | F | P | N | I | T | N | L | C | P | F | G | E | V | F | N | A | T | R | F | A | S | V | Y | A | W | N | R | K | R | I | S | N | C | V | A | D | Y | S | V | L | Y | N | S | A | S | F | S | T | F | K | C | Y | G | V | S | P | T | K | L | N | D | L | C | F | T | N | V | Y | A | D | S | F | V | I | R | G | D | E | V | R | Q | I | A | P | G | Q | T | G | K | I | A | D | Y | N | Y | K | L | P | D | D | F | T | G | C | V | I | A | W | N | S | N | N | L | D | S | K | V | G | G | N | Y | N | Y | L | Y | R | L | F | R | K | S | N | L | K | P | F | E | R | D | I | S | T | E | I | Y | Q | A | G | S | T | P | C | N | G | V | E | G | F | N | C | Y | F | P | L | Q | S | Y | G | F | Q | P | T | N | G | V | G | Y | Q | P | Y | R | V | V | V | L | S | F | E | L | L | H | A | P | A | T | V | C | G | P | K | K | S | T | N | L | V | K | N | K | C | V | N | F | N | F | N | G | L | T | G | T | G | V | L | T | E | S | N | K | K | F | L | P | F | Q | Q | F | G | R | D | I | A | D | T | T | D | A | V | R | D | P | Q | T | L | E | I | L | D | I | T | P | C | S | F | G | G | V | S | V | I | T | P | G | T | N | T | S | N | Q | V | A | V | L | Y | Q | D | V | N | C | T | E | V | P | V | A | I | H | A | D | Q | L | T | P | T | W | R | V | Y | S | T | G | S | N | V | F | Q | T | R | A | G | C | L | I | G | A | E | H | V | N | N | S | Y | E | C | D | I | P | I | G | A | G | I | C | A | S | Y | Q | T | Q | T | N | S | P | R | R | A | R | S | V | A | S | Q | S | I | I | A | Y | T | M | S | L | G | A | E | N | S | V | A | Y | S | N | N | S | I | A | I | P | T | N | F | T | I | S | V | T | T | E | I | L | P | V | S | M | T | K | T | S | V | D | C | T | M | Y | I | C | G | D | S | T | E | C | S | N | L | L | L | Q | Y | G | S | F | C | T | Q | L | N | R | A | L | T | G | I | A | V | E | Q | D | K | N | T | Q | E | V | F | A | Q | V | K | Q | I | Y | K | T | P | P | I | K | D | F | G | G | F | N | F | S | Q | I | L | P | D | P | S | K | P | S | K | R | S | F | I | E | D | L | L | F | N | K | V | T | L | A | D | A | G | F | I | K | Q | Y | G | D | C | L | G | D | I | A | A | R | D | L | I | C | A | Q | K | F | N | G | L | T | V | L | P | P | L | L | T | D | E | M | I | A | Q | Y | T | S | A | L | L | A | G | T | I | T | S | G | W | T | F | G | A | G | A | A | L | Q | I | P | F | A | M | Q | M | A | Y | R | F | N | G | I | G | V | T | Q | N | V | L | Y | E | N | Q | K | L | I | A | N | Q | F | N | S | A | I | G | K | I | Q | D | S | L | S | S | T | A | S | A | L | G | K | L | Q | D | V | V | N | Q | N | A | Q | A | L | N | T | L | V | K | Q | L | S | S | N | F | G | A | I | S | S | V | L | N | D | I | L | S | R | L | D | K | V | E | A | E | V | Q | I | D | R | L | I | T | G | R | L | Q | S | L | Q | T | Y | V | T | Q | Q | L | I | R | A | A | E | I | R | A | S | A | N | L | A | A | T | K | M | S | E | C | V | L | G | Q | S | K | R | V | D | F | C | G | K | G | Y | H | L | M | S | F | P | Q | S | A | P | H | G | V | V | F | L | H | V | T | Y | V | P | A | Q | E | K | N | F | T | T | A | P | A | I | C | H | D | G | K | A | H | F | P | R | E | G | V | F | V | S | N | G | T | H | W | F | V | T | Q | R | N | F | Y | E | P | Q | I | I | T | T | D | N | T | F | V | S | G | N | C | D | V | V | I | G | I | V | N | N | T | V | Y | D | P | L | Q | P | E | L | D | S | F | K | E | E | L | D | K | Y | F | K | N | H | T | S | P | D | V | D | L | G | D | I | S | G | I | N | A | S | V | V | N | I | Q | K | E | I | D | R | L | N | E | V | A | K | N | L | N | E | S | L | I | D | L | Q | E | L | G | K | Y | E | Q | Y | I | K | W | P | W | Y | I | W | L | G | F | I | A | G | L | I | A | I | V | M | V | T | I | M | L | C | C | M | T | S | C | C | S | C | L | K | G | C | C | S | C | G | S | C | C | K | F | D | E | D | D | S | E | P | V | L | K | G | V | K | L | H | Y | T | * |
NC_045512_SARS_CoV_2_Wuhan_Hu_1 | ATG | TTT | GTT | TTT | CTT | GTT | TTA | TTG | CCA | CTA | GTC | TCT | A---GT | CAG | TGT | GTT | AAT | CTT | ACA | ACC | AGA | ACT | CAA | TTA | CCC | CCT | GCA | TAC | ACT | AAT | TCT | TTC | ACA | CGT | GGT | GTT | TAT | TAC | CCT | GAC | AAA | GTT | TTC | AGA | TCC | TCA | GTT | TTA | CAT | TCA | ACT | CAG | GAC | TTG | TTC | TTA | CCT | TTC | TTT | TCC | AAT | GTT | ACT | TGG | TTC | CAT | GCT | ATA | CAT | GTC | TCT | GGG | ACC | AAT | GGT | ACT | AAG | AGG | TTT | GAT | AAC | CCT | GTC | CTA | CCA | TTT | AAT | GAT | GGT | GTT | TAT | TTT | GCT | TCC | ACT | GAG | AAG | TCT | AAC | ATA | ATA | AGA | GGC | TGG | ATT | TTT | GGT | ACT | ACT | TTA | GAT | TCG | AAG | ACC | CAG | TCC | CTA | CTT | ATT | GTT | AAT | AAC | GCT | ACT | AAT | GTT | GTT | ATT | AAA | GTC | TGT | GAA | TTT | CAA | TTT | TGT | AAT | GAT | CCA | TTT | TTG | GGT | GTT | TAT | TAC | CAC | AAA | AAC | AAC | AAA | AGT | TGG | ATG | GAA | AGT | GAG | TTC | AGA | GTT | TAT | TCT | AGT | GCG | AAT | AAT | TGC | ACT | TTT | GAA | TAT | GTC | TCT | CAG | CCT | TTT | CTT | ATG | GAC | CTT | GAA | G---GA | AAA | CAG | GGT | AAT | TTC | AAA | AAT | CTT | AGG | GAA | TTT | GTG | TTT | AAG | AAT | ATT | GAT | GGT | TAT | TTT | AAA | ATA | TAT | TCT | AAG | CAC | ACG | CCT | ATT | AAT | TTA | GTG | CGT | GA------------T | CTC | CCT | CAG | GGT | TTT | TCG | GCT | TTA | GAA | CCA | TTG | GTA | GAT | TTG | CCA | ATA | GGT | ATT | AAC | ATC | ACT | AGG | TTT | CAA | ACT | TTA | CTT | GCT | TTA | CAT | AGA | AGT | TAT | TTG | ACT | CCT | GGT | GAT | TCT | TCT | TCA | GGT | TGG | ACA | GCT | GGT | GCT | GCA | GCT | TAT | TAT | GTG | GGT | TAT | CTT | CAA | CCT | AGG | ACT | TTT | CTA | TTA | AAA | TAT | AAT | GAA | AAT | GGA | ACC | ATT | ACA | GAT | GCT | GTA | GAC | TGT | GCA | CTT | GAC | CCT | CTC | TCA | GAA | ACA | AAG | TGT | ACG | TTG | AAA | TCC | TTC | ACT | GTA | GAA | AAA | GGA | ATC | TAT | CAA | ACT | TCT | AAC | TTT | AGA | GTC | CAA | CCA | ACA | GAA | TCT | ATT | GTT | AGA | TTT | CCT | AAT | ATT | ACA | AAC | TTG | TGC | CCT | TTT | GGT | GAA | GTT | TTT | AAC | GCC | ACC | AGA | TTT | GCA | TCT | GTT | TAT | GCT | TGG | AAC | AGG | AAG | AGA | ATC | AGC | AAC | TGT | GTT | GCT | GAT | TAT | TCT | GTC | CTA | TAT | AAT | TCC--- | GCA | TCA | TTT | TCC | ACT | TTT | AAG | TGT | TAT | GGA | GTG | TCT | CCT | ACT | AAA | TTA | AAT | GAT | CTC | TGC | TTT | ACT | AAT | GTC | TAT | GCA | GAT | TCA | TTT | GTA | ATT | AGA | GGT | GAT | GAA | GTC | AGA | CAA | ATC | GCT | CCA | GGG | CAA | ACT | GGA | AAG | ATT | GCT | GAT | TAT | AAT | TAT | AAA | TTA | CCA | GAT | GAT | TTT | ACA | GGC | TGC | GTT | ATA | GCT | TGG | AAT | TCT | AAC | AAT | CTT | GAT | TCT | AAG | GTT | GGT | GGT | AAT | TAT | AAT | TAC | CTG | TAT | AGA | TTG | TTT | AGG | AAG | TCT | AAT | CTC | AAA | CCT | TTT | GAG | AGA | GAT | ATT | TCA | ACT | GAA | ATC | TAT | CAG | GCC | GGT | AGC | ACA | CCT | TGT | AAT | GGT | GTT | GAA | GGT | TTT | AAT | TGT | TAC | TTT | CCT | TTA | CAA | TCA | TAT | GGT | TTC | CAA | CCC | ACT | AAT | GGT | GTT | GGT | TAC | CAA | CCA | TAC | AGA | GTA | GTA | GTA | CTT | TCT | TTT | GAA | CTT | CTA | CAT | GCA | CCA | GCA | ACT | GTT | TGT | GGA | CCT | AAA | AAG | TCT | ACT | AAT | TTG | GTT | AAA | AAC | AAA | TGT | GTC | AAT | TTC | AAC | TTC | AAT | GGT | TTA | ACA | GGC | ACA | GGT | GTT | CTT | ACT | GAG | TCT | AAC | AAA | AAG | TTT | CTG | CCT | TTC | CAA | CAA | TTT | GGC | AGA | GAC | ATT | GCT | GAC | ACT | ACT | GAT | GCT | GTC | CGT | GAT | CCA | CAG | ACA | CTT | GAG | ATT | CTT | GAC | ATT | ACA | CCA | TGT | TCT | TTT | GGT | GGT | GTC | AGT | GTT | ATA | ACA | CCA | GGA | ACA | AAT | ACT | TCT | AAC | CAG | GTT | GCT | GTT | CTT | TAT | CAG | GAT | GTT | AAC | TGC | ACA | GAA | GTC | CCT | GTT | GCT | ATT | CAT | GCA | GAT | CAA | CTT | ACT | CCT | ACT | TGG | CGT | GTT | TAT | TCT | ACA | GGT | TCT | AAT | G------TT | TTT | CAA | ACA | CGT | GCA | GGC | TGT | TTA | ATA | GGG | GCT | GAA | CAT | GTC | AAC | AAC | TCA | TAT | GAG | TGT | GAC | ATA | CCC | ATT | GGT | GCA | GGT | ATA | TGC | GCT | AGT | TAT | CAG | ACT | CAG | ACT | AAT | TCT | CCT | CGG | CGG | GCA | CGT | AGT | GTA | GCT | AGT | CAA | TCC | ATC | ATT | GCC | TAC | ACT | ATG | TCA | CTT | GGT | GCA | GAA | AAT | TCA | GTT | GCT | TAC | TCT | AAT | AAC | TCT | ATT | GCC | ATA | CCC | ACA | AAT | TTT | ACT | ATT | AGT | GTT | ACC | ACA | GAA | ATT | CTA | CCA | GTG | TCT | ATG | ACC | AAG | ACA | TCA | GTA | GAT | TGT | ACA | ATG | TAC | ATT | TGT | GGT | GAT | TCA | ACT | GAA | TGC | AGC | AAT | CTT | TTG | TTG | CAA | TAT | GGC | AGT | TTT | TGT | ACA | CAA | TTA | AAC | CGT | GCT | TTA | ACT | GGA | ATA | GCT | GTT | GAA | CAA | GAC | AAA | AAC | ACC | CAA | GAA | GTT | TTT | GCA | CAA | GTC | AAA | CAA | ATT | TAC | AAA | ACA | CCA | CCA | ATT | AAA | GAT | TTT | GGT | GGT | TTT | AAT | TTT | TCA | CAA | ATA | TTA | CCA | GAT | CCA | TCA | AAA | CCA | AGC | AAG | AGG | TCA | TTT | ATT | GAA | GAT | CTA | CTT | TTC | AAC | AAA | GTG | ACA | CTT | GCA | GAT | GCT | GGC | TTC | ATC | AAA | CAA | TAT | GGT | GAT | TGC | CTT | GGT | GAT | ATT | GCT | GCT | AGA | GAC | CTC | ATT | TGT | GCA | CAA | AAG | TTT | AAC | GGC | CTT | ACT | GTT | TTG | CCA | CCT | TTG | CTC | ACA | GAT | GAA | ATG | ATT | GCT | CAA | TAC | ACT | TCT | GCA | CTG | TTA | GCG | GGT | ACA | ATC | ACT | TCT | GGT | TGG | ACC | TTT | GGT | GCA | GGT | GCT | GCA | TTA | CAA | ATA | CCA | TTT | GCT | ATG | CAA | ATG | GCT | TAT | AGG | TTT | AAT | GGT | ATT | GGA | GTT | ACA | CAG | AAT | GTT | CTC | TAT | GAG | AAC | CAA | AAA | TTG | ATT | GCC | AAC | CAA | TTT | AAT | AGT | GCT | ATT | GGC | AAA | ATT | CAA | GAC | TCA | CTT | TCT | TCC | ACA | GCA | AGT | GCA | CTT | GGA | AAA | CTT | CAA | GAT | GTG | GTC | AAC | CAA | AAT | GCA | CAA | GCT | TTA | AAC | ACG | CTT | GTT | AAA | CAA | CTT | AGC | TCC | AAT | TTT | GGT | GCA | ATT | TCA | AGT | GTT | TTA | AAT | GAT | ATC | CTT | TCA | CGT | CTT | GAC | AAA | GTT | GAG | GCT | GAA | GTG | CAA | ATT | GAT | AGG | TTG | ATC | ACA | GGC | AGA | CTT | CAA | AGT | TTG | CAG | ACA | TAT | GTG | ACT | CAA | CAA | TTA | ATT | AGA | GCT | GCA | GAA | ATC | AGA | GCT | TCT | GCT | AAT | CTT | GCT | GCT | ACT | AAA | ATG | TCA | GAG | TGT | GTA | CTT | GGA | CAA | TCA | AAA | AGA | GTT | GAT | TTT | TGT | GGA | AAG | GGC | TAT | CAT | CTT | ATG | TCC | TTC | CCT | CAG | TCA | GCA | CCT | CAT | GGT | GTA | GTC | TTC | TTG | CAT | GTG | ACT | TAT | GTC | CCT | GCA | CAA | GAA | AAG | AAC | TTC | ACA | ACT | GCT | CCT | GCC | ATT | TGT | CAT | GAT | GGA | AAA | GCA | CAC | TTT | CCT | CGT | GAA | GGT | GTC | TTT | GTT | TCA | AAT | GGC | ACA | CAC | TGG | TTT | GTA | ACA | CAA | AGG | AAT | TTT | TAT | GAA | CCA | CAA | ATC | ATT | ACT | ACA | GAC | AAC | ACA | TTT | GTG | TCT | GGT | AAC | TGT | GAT | GTT | GTA | ATA | GGA | ATT | GTC | AAC | AAC | ACA | GTT | TAT | GAT | CCT | TTG | CAA | CCT | GAA | TTA | GAC | TCA | TTC | AAG | GAG | GAG | TTA | GAT | AAA | TAT | TTT | AAG | AAT | CAT | ACA | TCA | CCA | GAT | GTT | GAT | TTA | GGT | GAC | ATC | TCT | GGC | ATT | AAT | GCT | TCA | GTT | GTA | AAC | ATT | CAA | AAA | GAA | ATT | GAC | CGC | CTC | AAT | GAG | GTT | GCC | AAG | AAT | TTA | AAT | GAA | TCT | CTC | ATC | GAT | CTC | CAA | GAA | CTT | GGA | AAG | TAT | GAG | CAG | TAT | ATA | AAA | TGG | CCA | TGG | TAC | ATT | TGG | CTA | GGT | TTT | ATA | GCT | GGC | TTG | ATT | GCC | ATA | GTA | ATG | GTG | ACA | ATT | ATG | CTT | TGC | TGT | ATG | ACC | AGT | TGC | TGT | AGT | TGT | CTC | AAG | GGC | TGT | TGT | TCT | TGT | GGA | TCC | TGC | TGC | AAA | TTT | GAT | GAA | GAC | GAC | TCT | GAG | CCA | GTG | CTC | AAA | GGA | GTC | AAA | TTA | CAT | TAC | ACA | TAA |
MN996532_Bat_CoV_RaTG13 | ATG | TTT | GTT | TTT | CTT | GTT | TTA | TTG | CCA | CTA | GTT | TCT | A---GT | CAG | TGT | GTT | AAT | CTA | ACA | ACT | AGA | ACT | CAG | TTA | CCT | CCT | GCA | TAC | ACC | AAC | TCA | TCC | ACC | CGT | GGT | GTC | TAT | TAC | CCT | GAC | AAA | GTT | TTC | AGA | TCT | TCA | GTT | TTA | CAT | TTA | ACT | CAG | GAT | TTG | TTT | TTA | CCT | TTC | TTC | TCC | AAT | GTG | ACC | TGG | TTC | CAT | GCT | ATA | CAT | GTT | TCA | GGG | ACC | AAT | GGT | ATT | AAA | AGG | TTT | GAT | AAC | CCA | GTT | CTG | CCA | TTC | AAC | GAT | GGC | GTC | TAT | TTT | GCT | TCC | ACT | GAG | AAG | TCT | AAT | ATA | ATA | AGA | GGA | TGG | ATT | TTT | GGT | ACT | ACC | TTA | GAT | TCG | AAG | ACC | CAG | TCT | CTA | CTT | ATT | GTT | AAT | AAC | GCT | ACT | AAT | GTT | GTT | ATT | AAA | GTC | TGT | GAA | TTT | CAA | TTT | TGT | AAT | GAT | CCA | TTT | TTG | GGT | GTT | TAT | TAC | CAC | AAA | AAC | AAC | AAA | AGT | TGG | ATG | GAA | AGT | GAG | TTC | AGA | GTT | TAC | TCT | AGT | GCG | AAT | AAT | TGC | ACT | TTT | GAG | TAT | GTC | TCT | CAG | CCT | TTT | CTT | ATG | GAC | CTT | GAA | G---GA | AAA | CAG | GGT | AAT | TTC | AAA | AAT | CTT | AGG | GAA | TTC | GTG | TTT | AAG | AAT | ATT | GAT | GGT | TAT | TTC | AAA | ATA | TAT | TCT | AAA | CAT | ACG | CCT | ATT | AAT | TTA | GTG | CGT | GA------------T | CTT | CCC | CCT | GGT | TTT | TCA | GCT | TTA | GAA | CCA | TTG | GTA | GAT | CTG | CCA | ATA | GGT | ATT | AAC | ATC | ACT | AGG | TTT | CAA | ACT | TTA | CTT | GCT | TTA | CAT | AGA | AGC | TAT | TTG | ACT | CCT | GGT | GAT | TCT | TCT | TCA | GGT | TGG | ACA | GCT | GGT | GCT | GCA | GCT | TAT | TAT | GTG | GGT | TAT | CTT | CAA | CCA | AGG | ACT | TTT | CTA | CTA | AAA | TAT | AAT | GAG | AAT | GGA | ACC | ATT | ACA | GAT | GCT | GTA | GAC | TGT | GCA | CTT | GAC | CCT | CTT | TCA | GAA | ACA | AAG | TGT | ACG | TTA | AAA | TCC | TTC | ACT | GTT | GAA | AAA | GGA | ATT | TAT | CAA | ACC | TCT | AAC | TTT | AGA | GTC | CAA | CCA | ACA | GAT | TCT | ATT | GTT | AGA | TTC | CCA | AAT | ATT | ACA | AAC | TTA | TGT | CCT | TTT | GGT | GAA | GTT | TTT | AAC | GCC | ACC | ACA | TTC | GCA | TCA | GTT | TAT | GCT | TGG | AAC | AGA | AAG | AGA | ATT | AGC | AAC | TGT | GTT | GCT | GAT | TAC | TCT | GTC | CTA | TAT | AAT | TCC--- | ACT | TCA | TTT | TCT | ACC | TTT | AAA | TGT | TAT | GGA | GTG | TCT | CCT | ACT | AAA | TTA | AAT | GAT | CTC | TGC | TTT | ACT | AAT | GTT | TAT | GCA | GAC | TCA | TTT | GTG | ATT | ACA | GGT | GAT | GAA | GTC | AGA | CAA | ATT | GCG | CCA | GGA | CAA | ACT | GGA | AAG | ATT | GCT | GAC | TAC | AAT | TAT | AAA | CTA | CCA | GAT | GAT | TTT | ACT | GGT | TGT | GTT | ATA | GCT | TGG | AAT | TCT | AAG | CAT | ATT | GAT | GCA | AAA | GAG | GGC | GGT | AAT | TTT | AAC | TAT | CTT | TAC | CGT | CTC | TTT | AGA | AAA | GCT | AAT | CTT | AAA | CCC | TTT | GAG | AGG | GAT | ATC | TCA | ACT | GAA | ATT | TAC | CAA | GCA | GGC | AGC | AAA | CCT | TGT | AAT | GGT | CAA | ACT | GGT | CTA | AAT | TGC | TAC | TAC | CCA | CTT | TAT | AGA | TAT | GGA | TTT | TAC | CCT | ACT | GAT | GGT | GTT | GGT | CAC | CAA | CCT | TAT | AGG | GTA | GTA | GTA | CTT | TCT | TTT | GAA | CTT | CTA | AAT | GCA | CCA | GCA | ACT | GTT | TGT | GGA | CCT | AAG | AAG | TCT | ACT | AAC | TTG | GTT | AAA | AAT | AAA | TGT | GTC | AAT | TTC | AAC | TTT | AAT | GGT | TTA | ACT | GGC | ACA | GGT | GTC | CTC | ACA | GAG | TCT | AAT | AAA | AAG | TTT | CTA | CCT | TTC | CAA | CAA | TTT | GGT | AGA | GAC | ATT | GCA | GAC | ACT | ACT | GAT | GCC | GTC | CGT | GAT | CCA | CAG | ACA | CTT | GAG | ATT | CTT | GAC | ATT | ACA | CCA | TGT | TCT | TTT | GGT | GGT | GTC | AGT | GTT | ATA | ACA | CCT | GGA | ACA | AAT | GCC | TCT | AAC | CAG | GTT | GCT | GTT | CTT | TAT | CAG | GAT | GTT | AAC | TGC | ACA | GAA | GTC | CCT | GTT | GCT | ATC | CAT | GCA | GAC | CAA | CTT | ACT | CCC | ACT | TGG | CGT | GTT | TAC | TCC | ACA | GGT | TCT | AAT | G------TT | TTT | CAA | ACA | CGT | GCA | GGT | TGT | TTA | ATA | GGG | GCT | GAA | CAT | GTC | AAT | AAC | TCG | TAT | GAG | TGT | GAC | ATA | CCT | ATT | GGT | GCA | GGA | ATA | TGC | GCC | AGT | TAT | CAG | ACT | CAA | ACT | AAT | T-- | --- | --- | --- | -CA | CGT | AGT | GTG | GCC | AGT | CAA | TCT | ATT | ATT | GCC | TAC | ACT | ATG | TCA | CTT | GGT | GCA | GAA | AAT | TCA | GTT | GCT | TAT | TCT | AAT | AAC | TCT | ATT | GCC | ATA | CCT | ACA | AAT | TTT | ACT | ATT | AGT | GTG | ACC | ACT | GAA | ATT | CTA | CCT | GTG | TCT | ATG | ACA | AAG | ACA | TCG | GTA | GAC | TGT | ACA | ATG | TAT | ATT | TGT | GGT | GAT | TCA | ACT | GAG | TGC | AGC | AAC | CTT | TTG | TTG | CAA | TAT | GGT | AGT | TTT | TGC | ACA | CAA | TTA | AAT | CGT | GCT | TTA | ACT | GGA | ATA | GCT | GTT | GAA | CAG | GAC | AAA | AAT | ACT | CAA | GAA | GTT | TTT | GCT | CAA | GTT | AAA | CAA | ATT | TAT | AAG | ACA | CCA | CCA | ATT | AAA | GAT | TTT | GGT | GGT | TTC | AAT | TTT | TCA | CAA | ATA | TTA | CCA | GAT | CCA | TCA | AAA | CCA | AGC | AAG | AGG | TCA | TTT | ATT | GAG | GAT | TTA | CTT | TTC | AAT | AAA | GTG | ACA | CTT | GCT | GAT | GCT | GGC | TTC | ATC | AAA | CAA | TAT | GGT | GAT | TGC | CTT | GGT | GAT | ATT | GCT | GCT | AGG | GAT | CTT | ATT | TGT | GCT | CAA | AAG | TTC | AAT | GGC | CTT | ACT | GTT | CTG | CCA | CCT | TTG | CTC | ACA | GAT | GAA | ATG | ATC | GCT | CAA | TAC | ACT | TCT | GCA | CTA | TTA | GCA | GGT | ACA | ATC | ACT | TCT | GGT | TGG | ACT | TTT | GGT | GCA | GGT | GCT | GCT | TTA | CAA | ATA | CCA | TTT | GCC | ATG | CAA | ATG | GCT | TAT | AGG | TTT | AAT | GGT | ATT | GGA | GTT | ACA | CAG | AAT | GTT | CTC | TAT | GAG | AAC | CAA | AAA | TTG | ATT | GCC | AAC | CAG | TTT | AAT | AGT | GCT | ATT | GGC | AAA | ATT | CAA | GAC | TCA | CTT | TCT | TCT | ACA | GCA | AGT | GCA | CTT | GGA | AAA | CTT | CAA | GAT | GTT | GTC | AAC | CAA | AAT | GCA | CAA | GCT | TTA | AAC | ACG | CTT | GTT | AAA | CAA | CTT | AGC | TCC | AAT | TTT | GGA | GCT | ATT | TCT | AGC | GTG | TTA | AAT | GAT | ATC | CTT | TCA | CGT | CTC | GAC | AAA | GTT | GAG | GCT | GAA | GTG | CAG | ATT | GAC | AGG | TTG | ATC | ACA | GGC | AGA | CTT | CAA | AGC | TTG | CAG | ACA | TAT | GTG | ACT | CAA | CAA | TTA | ATT | AGA | GCT | GCA | GAA | ATC | AGA | GCT | TCT | GCC | AAT | CTT | GCT | GCT | ACT | AAA | ATG | TCA | GAG | TGT | GTA | CTC | GGA | CAA | TCA | AAA | AGA | GTT | GAT | TTT | TGT | GGA | AAA | GGC | TAT | CAT | CTT | ATG | TCT | TTC | CCT | CAG | TCA | GCA | CCT | CAT | GGT | GTA | GTC | TTC | TTG | CAT | GTG | ACA | TAT | GTC | CCT | GCA | CAA | GAA | AAG | AAC | TTC | ACA | ACT | GCT | CCT | GCC | ATT | TGT | CAT | GAT | GGA | AAA | GCA | CAC | TTT | CCA | CGT | GAA | GGT | GTT | TTC | GTT | TCA | AAT | GGC | ACA | CAC | TGG | TTT | GTT | ACA | CAA | AGG | AAT | TTT | TAT | GAA | CCA | CAA | ATT | ATT | ACA | ACA | GAC | AAC | ACA | TTT | GTC | TCT | GGT | AGC | TGT | GAT | GTT | GTA | ATA | GGA | ATT | GTC | AAC | AAC | ACA | GTT | TAT | GAT | CCT | TTG | CAA | CCA | GAA | CTT | GAT | TCA | TTC | AAG | GAG | GAG | TTG | GAT | AAA | TAC | TTT | AAA | AAT | CAT | ACA | TCA | CCT | GAT | GTA | GAT | TTA | GGT | GAC | ATT | TCT | GGC | ATT | AAT | GCT | TCA | GTT | GTC | AAT | ATT | CAA | AAG | GAA | ATT | GAC | CGC | CTC | AAT | GAG | GTT | GCC | AAA | AAT | CTA | AAT | GAA | TCT | CTC | ATC | GAT | CTC | CAA | GAA | CTT | GGA | AAG | TAT | GAA | CAG | TAT | ATA | AAA | TGG | CCA | TGG | TAC | ATT | TGG | CTA | GGT | TTT | ATA | GCT | GGC | TTG | ATT | GCC | ATA | ATA | ATG | GTC | ACG | ATT | ATG | CTT | TGC | TGT | ATG | ACC | AGT | TGC | TGC | AGT | TGT | CTC | AAG | GGC | TGT | TGT | TCT | TGC | GGA | TCT | TGC | TGC | AAA | TTT | GAT | GAA | GAC | GAC | TCT | GAG | CCA | GTG | CTC | AAA | GGA | GTC | AAA | TTA | CAT | TAC | ACA | TAA |
MG772933_Bat_SARS_like_CoV_bat_SL_CoVZC45 | TTG | TTT | TTC | TTG | TTT | CTT | CAG | TTC | GCC | TTA | GTA | AAC | T---CC | CAG | TGT | GTT | AAC | TTG | ACA | GGC | AGA | ACC | CCA | CTC | AAT | CCC | AAT | TAT | ACT | AAT | TCT | TCA | CAA | AGA | GGT | GTT | TAT | TAC | CCT | GAC | ACA | ATT | TAT | AGA | TCA | GAC | ACA | CTT | GTG | CTC | AGC | CAG | GGT | TAT | TTT | CTT | CCA | TTT | TAT | TCT | AAT | GTT | AGC | TGG | TAT | TAC | TCA | TTA | ACA | A-- | -CC | AAC | AAT | GCT | GCC | ACA | AAG | AGG | ACT | GAT | AAT | CCT | ATA | TTA | GAT | TTC | AAG | GAC | GGC | ATA | TAC | TTT | GCT | GCC | ACT | GAA | CAC | TCA | AAT | ATT | ATC | AGG | GGC | TGG | ATC | TTT | GGA | ACA | ACT | CTT | GAC | AAC | ACT | TCT | CAA | TCT | CTC | TTG | ATA | GTT | AAC | AAC | GCA | ACG | AAT | GTT | ATT | ATC | AAG | GTT | TGT | AAT | TTT | GAT | TTT | TGT | TAT | GAT | CCC | TAC | CTT | AGT | GGT | TAC | TAT | CAT | --- | AAC | AAC | AAA | ACA | TGG | AGC | ATC | AGA | GAA | TTT | GCT | GTC | TAT | TCT | TCT | TAT | GCT | AAT | TGT | ACT | TTT | GAG | TAT | GTT | TCG | AAA | TCC | TTT | ATG | TTG | AAC | ATT | TCT | G---GT | AAT | GGT | GGT | CTG | TTC | AAC | ACT | CTT | AGA | GAG | TTT | GTT | TTC | AGA | AAT | GTC | GAT | GGG | CAT | TTC | AAG | ATT | TAC | TCA | AAG | TTT | ACA | CCA | GTA | AAT | TTA | AAT | CGT | GG------------C | TTG | CCT | ACT | GGT | CTC | TCA | GTG | CTT | CAG | CCA | TTG | GTT | GAA | TTA | CCA | GTT | AGC | ATA | AAT | ATT | ACT | AAA | TTC | AGA | ACA | CTC | CTC | ACT | ATT | CAT | AGA | GGA | GAC | CCT | ATG | CCT | AAT | AA- | --- | --- | --C | GGC | TGG | ACT | GCT | TTT | TCA | GCT | GCT | TAT | TTC | GTG | GGC | TAT | CTT | AAA | CCA | CGT | ACC | TTT | ATG | CTG | AAA | TAT | AAT | GAG | AAT | GGC | ACC | ATT | ACT | GAT | GCT | GTT | GAT | TGT | GCA | CTT | GAC | CCT | CTT | TCG | GAG | ACA | AAG | TGT | ACG | TTA | AAA | TCT | CTT | ACT | GTC | CAA | AAG | GGC | ATC | TAT | CAG | ACT | TCT | AAC | TTC | CGA | GTG | CAA | CCC | ACT | CAG | TCT | GTA | GTT | AGA | TTT | CCT | AAT | ATT | ACC | AAT | GTG | TGT | CCA | TTT | CAC | AAG | GTT | TTT | AAT | GCC | ACG | AGG | TTT | CCT | TCC | GTC | TAT | GCG | TGG | GAA | AGA | ACT | AAA | ATT | TCT | GAT | TGC | ATT | GCA | GAT | TAC | ACT | GTT | TTC | TAC | AAT | TCA--- | ACT | TCT | TTT | TCT | ACT | TTT | AAA | TGT | TAT | GGT | GTT | TCA | CCT | TCT | AAA | TTG | ATT | GAT | TTG | TGC | TTT | ACG | AGT | GTG | TAT | GCT | GAT | ACA | TTT | CTC | ATA | AGA | TTC | TCA | GAA | GTC | AGA | CAG | GTG | GCA | CCA | GGA | CAA | ACT | GGT | GTC | ATT | GCT | GAC | TAT | AAT | TAT | AAA | TTA | CCT | GAT | GAT | TTT | ACA | GGT | TGT | GTC | ATA | GCT | TGG | AAC | ACT | GCC | AAA | C-- | --- | --- | -AG | GAT | GTA | GGT | AAT | TAT | TTC | TAC | AGG | TCT | CAT | CGT | TCT | ACC | AAA | T-- | --- | -TG | AAA | CCA | TTT | GAA | AGA | GAT | CTT | TCC | TCA | GAC | GAG | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | AAT | GGT | GTC | CGT | ACA | CTT | AGT | ACT | TAT | GAC | TTC | AAC | CCT | AAT | GTA | CCA | CTT | GAA | TAC | CAA | GCT | ACA | AGG | GTT | GTT | GTT | TTG | TCA | TTT | GAG | CTT | CTA | AAT | GCA | CCA | GCT | ACA | GTT | TGT | GGA | CCA | AAA | CTA | TCC | ACA | CAA | CTA | GTA | AAA | AAT | CAG | TGC | GTT | AAT | TTC | AAC | TTT | AAC | GGA | CTC | AAG | GGC | ACT | GGT | GTC | TTG | ACT | GAT | TCT | TCC | AAG | AGG | TTT | CAG | TCA | TTC | CAA | CAA | TTT | GGT | AAA | GAT | GCG | TCT | GAC | TTT | ATT | GAT | TCA | GTA | CGT | GAT | CCT | CAA | ACA | CTT | GAG | ATA | CTT | GAC | ATT | ACA | CCT | TGC | TCT | TTT | GGT | GGT | GTC | AGT | GTT | ATA | ACA | CCA | GGA | ACA | AAC | ACT | TCT | TTA | GAG | GTG | GCT | GTT | CTT | TAC | CAA | GAT | GTT | AAC | TGC | ACT | GAT | GTA | CCA | ACT | ACT | ATA | CAT | GCA | GAC | CAA | CTA | ACA | CCT | GCT | TGG | CGT | ATT | TAT | GCT | ACT | GGC | ACT | AAT | G------TG | TTT | CAA | ACT | CAA | GCA | GGC | TGT | CTT | ATA | GGA | GCT | GAA | CAT | GTC | AAT | GCT | TCT | TAT | GAG | TGT | GAC | ATC | CCA | ATT | GGT | GCT | GGT | ATT | TGT | GCT | AGC | TAC | CAT | ACG | GCT | TCT | ATA | T-- | --- | --- | --- | -TA | CGC | AGT | ACA | AGC | CAG | AAA | GCT | ATT | GTG | GCT | TAT | ACT | ATG | TCC | CTT | GGT | GCT | GAG | AAC | TCT | ATC | GCT | TAT | GCT | AAC | AAT | TCT | ATA | GCC | ATA | CCT | ACA | AAT | TTT | TCA | ATT | AGT | GTT | ACC | ACT | GAA | GTT | ATG | CCT | GTA | TCA | ATG | GCT | AAA | ACT | TCT | GTA | GAT | TGT | ACT | ATG | TAT | ATC | TGT | GGT | GAC | TCT | ATA | GAG | TGT | AGC | AAC | TTG | TTG | TTA | CAA | TAT | GGC | AGT | TTT | TGC | ACA | CAA | CTA | AAT | CGT | GCT | TTA | AGT | GGG | ATT | GCT | ATT | GAG | CAA | GAC | AAG | AAC | ACC | CAA | GAG | GTT | TTT | GCT | CAA | GTT | AAG | CAA | ATC | TAT | AAA | ACA | CCA | CCT | ATT | AAG | GAT | TTT | GGT | GGT | TTT | AAT | TTT | TCA | CAG | ATA | CTA | CCT | GAC | CCA | TCT | AAA | CCC | AGC | AAG | AGG | TCG | TTT | ATT | GAA | GAC | TTA | CTC | TTC | AAT | AAA | GTC | ACT | CTT | GCT | GAT | GCC | GGT | TTT | ATC | AAA | CAG | TAC | GGT | GAT | TGT | TTG | GGT | GGT | ATT | TCT | GCT | AGA | GAT | TTG | ATT | TGT | GCT | CAA | AAG | TTC | AAT | GGA | CTT | ACT | GTC | TTA | CCA | CCA | TTG | CTC | ACA | GAT | GAA | ATG | ATC | GCT | GCT | TAT | ACA | GCT | GCA | TTA | ATT | AGC | GGC | ACT | GCC | ACT | GCT | GGA | TGG | ACC | TTT | GGT | GCT | GGT | GCT | GCT | CTT | CAA | ATA | CCA | TTT | GCC | ATG | CAA | ATG | GCT | TAT | AGG | TTT | AAT | GGA | ATT | GGA | GTT | ACT | CAG | AAT | GTT | CTC | TAT | GAG | AAT | CAG | AAA | TTA | ATA | GCC | AAT | CAG | TTT | AAT | AGT | GCT | ATT | GGA | AAA | ATC | CAA | GAG | TCT | TTG | ACA | TCT | ACA | GCT | AGT | GCA | CTT | GGA | AAA | TTG | CAG | GAT | GTT | GTT | AAC | CAA | AAT | GCA | CAA | GCT | TTA | AAC | ACG | CTT | GTT | AAA | CAA | CTT | AGT | TCC | AAT | TTT | GGT | GCA | ATT | TCA | AGC | GTG | TTG | AAT | GAC | ATT | CTT | TCA | CGC | CTT | GAC | AAA | GTC | GAG | GCT | GAG | GTT | CAG | ATT | GAT | AGG | TTG | ATC | ACA | GGT | AGA | CTT | CAG | AGT | TTA | CAG | ACG | TAT | GTG | ACT | CAA | CAA | TTA | ATC | AGA | GCT | GCA | GAA | ATC | AGA | GCT | TCT | GCT | AAT | CTT | GCT | GCG | ACT | AAA | ATG | TCC | GAG | TGT | GTA | CTA | GGA | CAA | TCT | AAA | AGA | GTT | GAT | TTT | TGT | GGA | AAA | GGT | TAT | CAC | CTA | ATG | TCT | TTT | CCC | CAG | TCA | GCG | CCT | CAT | GGT | GTT | GTC | TTC | TTA | CAT | GTG | ACT | TAC | ATT | CCT | TCG | CAA | GAA | AAG | AAC | TTC | ACA | ACA | GCT | CCT | GCC | ATT | TGC | CAT | GAA | GGT | AAA | GCA | CAC | TTC | CCA | CGT | GAA | GGT | GTT | TTC | GTT | TCG | AAT | GGC | ACA | CAC | TGG | TTT | GTA | ACA | CAA | AGG | AAC | TTT | TAT | GAA | CCT | AAA | ATT | ATA | ACC | ACT | GAC | AAT | ACA | TTT | GTC | TCT | GGT | AAC | TGT | GAT | GTT | GTA | ATT | GGA | ATT | ATC | AAC | AAC | ACA | GTT | TAT | GAT | CCT | TTA | CAA | CCA | GAA | CTT | GAT | TCA | TTT | AAG | GAG | GAG | TTA | GAT | AAA | TAT | TTT | AAA | AAT | CAT | ACA | TCA | CCT | GAT | ATT | GAT | CTT | GGT | GAT | ATT | TCT | GGC | ATT | AAT | GCT | TCT | GTT | GTC | AAT | ATT | CAA | AAG | GAA | ATT | GAC | CGC | CTC | AAT | GAG | GTT | GCC | AGA | AAT | TTA | AAT | GAA | TCA | CTC | ATT | GAT | CTC | CAA | GAA | CTT | GGA | AAA | TAT | GAG | CAA | TAT | ATC | AAA | TGG | CCA | TGG | TAT | GTT | TGG | CTC | GGC | TTC | ATT | GCT | GGA | CTC | ATT | GCT | ATA | GTC | ATG | GTT | ACA | ATC | CTG | CTT | TGT | TGC | ATG | ACA | AGT | TGT | TGC | AGT | TGT | CTC | AAG | GGC | TGT | TGT | TCT | TGC | GGA | TCT | TGC | TGT | AAA | TTT | GAT | GAA | GAC | GAC | TCT | GAG | CCT | GTG | CTC | AAA | GGA | GTC | AAA | TTA | CAT | TAC | ACA | TAA |
MG772934_Bat_SARS_like_CoV_bat_SL_CoVZXC21 | TTG | TTT | TTC | TTG | TTT | CTT | CAG | TTC | GCC | TTA | GTA | AAC | T---CC | CAG | TGT | G-- | -AT | TTG | ACA | GGT | AGA | ACT | CCA | CTC | AAT | CCC | AAT | TAT | ACT | AAT | TCT | TCA | CAA | AGA | GGT | GTT | TAT | TAC | CCT | GAC | ACA | ATT | TAT | AGA | TCT | GAC | ACA | CTA | GTG | CTT | AGT | CAG | GGT | TAT | TTT | CTT | CCA | TTT | TAT | TCC | AAT | GTT | AGC | TGG | TAT | TAT | TCA | TTA | ACA | A-- | -CC | AAC | AAT | GCT | GCC | ACA | AAG | AGG | ACT | GAC | AAC | CCT | ATA | TTA | GAT | TTC | AAG | GAC | GGC | ATA | TAT | TTT | GCT | GCC | ACT | GAA | CAC | TCA | AAT | ATT | GTC | AGG | GGC | TGG | ATC | TTT | GGA | ACA | ACT | CTT | GAC | AAC | ACT | TCT | CAA | TCT | CTC | TTG | ATA | GTT | AAC | AAT | GCA | ACG | AAT | GTT | ATT | ATC | AAG | GTT | TGT | AAT | TTT | GAC | TTT | TGT | TAC | GAT | CCC | TAC | CTT | AGT | GGT | TAC | TAT | CAT | --- | AAC | AAC | AAA | ACC | TGG | AGC | ATC | AGA | GAA | TTT | GCT | GTC | TAT | TCC | TTT | TAT | GCT | AAT | TGT | ACT | TTT | GAG | TAT | GTC | TCA | AAA | TCC | TTT | ATG | TTG | AAC | ATT | TCT | G---GT | AAT | GGT | GGT | CTG | TTC | AAC | ACT | CTC | AGA | GAG | TTT | GTT | TTT | AGA | AAT | GTC | GAT | GGG | CAT | TTC | AAG | ATT | TAC | TCA | AAA | TTT | ACA | CCA | GTA | AAC | TTA | AAT | CGT | GG------------C | TTA | CCT | ACT | GGT | CTT | TCA | GTA | CTT | CAA | CCG | TTG | GTT | GAA | TTA | CCA | GTT | AGC | ATA | AAT | ATT | ACT | AAA | TTT | AGA | ACA | CTC | CTC | ACT | ATT | CAT | AGA | GGA | GAC | CCT | ATG | TCT | AAT | AA- | --- | --- | --T | GGC | TGG | ACT | GCT | TTT | TCA | GCT | GCT | TAT | TTC | GTG | GGC | TAT | CTT | AAA | CCA | CGT | ACC | TTT | ATG | CTG | AAA | TAT | AAT | GAG | AAT | GGC | ACC | ATT | ACT | GAT | GCT | GTT | GAT | TGT | GCA | CTT | GAC | CCT | CTT | TCG | GAG | ACA | AAG | TGT | ACG | TTA | AAA | TCT | CTT | AGT | GTT | CAA | AAG | GGT | ATC | TAT | CAG | ACT | TCT | AAC | TTT | CGA | GTG | CAA | CCC | ACT | CAG | TCT | ATA | GTT | AGA | TTT | CCT | AAT | ATT | ACC | AAT | GTG | TGT | CCA | TTT | CAC | AAG | GTT | TTT | AAT | GCC | ACA | AGG | TTT | CCT | TCT | GTT | TAC | GCG | TGG | GAA | AGA | ACT | AAA | ATT | TCT | GAT | TGC | ATT | GCA | GAC | TAC | ACT | GTT | TTC | TAC | AAT | TCA--- | ACT | TCT | TTT | TCT | ACT | TTC | AAA | TGT | TAT | GGT | GTT | TCA | CCC | TCT | AAA | TTG | ATT | GAT | TTG | TGT | TTT | ACG | AGT | GTG | TAT | GCT | GAT | ACA | TTT | CTC | ATA | AGA | TTT | TCA | GAG | GTC | AGA | CAA | GTG | GCA | CCA | GGA | CAG | ACT | GGT | GTT | ATT | GCT | GAC | TAC | AAT | TAT | AAA | TTA | CCT | GAT | GAT | TTT | ACA | GGT | TGT | GTC | ATA | GCC | TGG | AAC | ACA | GCA | AAA | C-- | --- | --- | -AG | GAC | ACA | GGT | CAT | TAT | TTC | TAT | AGG | TCT | CAT | CGC | TCT | ACC | AAA | T-- | --- | -TA | AAA | CCA | TTT | GAA | AGA | GAC | CTT | TCT | TCA | GAT | GAG | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | AAT | GGT | GTC | CGT | ACA | CTT | AGT | ACT | TAT | GAC | TTT | AAC | CCT | AAT | GTA | CCG | CTT | GAA | TAT | CAA | GCT | ACA | AGG | GTT | GTT | GTC | TTG | TCA | TTT | GAG | CTT | CTA | AAT | GCA | CCA | GCT | ACA | GTT | TGT | GGA | CCA | AAA | TTA | TCC | ACA | CAA | CTA | GTA | AAA | AAT | CAG | TGC | GTT | AAT | TTC | AAT | TTT | AAC | GGA | CTC | AAG | GGC | ACT | GGT | GTC | TTG | ACT | GAT | TCT | TCT | AAG | AGG | TTT | CAG | TCA | TTC | CAA | CAA | TTT | GGT | AAA | GAT | GCG | TCT | GAC | TTT | ATT | GAT | TCA | GTA | CGT | GAT | CCT | CAA | ACA | CTT | GAG | ATA | CTT | GAC | ATT | ACA | CCT | TGC | TCT | TTT | GGT | GGT | GTC | AGT | GTT | ATA | ACA | CCA | GGA | ACA | AAC | ACT | TCT | TCA | GAG | GTG | GCT | GTT | CTT | TAC | CAA | GAT | GTT | AAC | TGC | ACT | GAT | GTA | CCA | ACT | ACT | ATA | CAT | GCA | GAC | CAA | TTA | ACA | CCT | GCT | TGG | CGC | ATT | TAT | GCT | ATT | GGC | ACT | AGT | G------TG | TTT | CAA | ACT | CAA | GCA | GGC | TGT | CTT | ATA | GGA | GCT | GAA | CAT | GTC | AAT | GCT | TCT | TAT | GAG | TGT | GAC | ATC | CCA | ATT | GGT | GCT | GGT | ATT | TGT | GCT | AGC | TAC | CAT | ACG | GCT | TCT | ATA | T-- | --- | --- | --- | -TA | CGT | AGT | ACA | GGC | CAG | AAA | GCT | ATT | GTG | GCT | TAT | ACT | ATG | TCC | CTT | GGT | GCT | GAG | AAC | TCT | ATT | GCT | TAT | GCT | AAC | AAT | TCT | ATA | GCC | ATA | CCT | ACA | AAT | TTT | TCA | ATC | AGT | GTC | ACC | ACT | GAA | GTT | ATG | CCT | GTA | TCA | ATG | GCT | AAA | ACT | TCT | GTA | GAT | TGC | ACT | ATG | TAT | ATC | TGC | GGT | GAC | TCT | ATA | GAG | TGT | AGC | AAC | TTG | TTG | TTA | CAA | TAT | GGC | AGT | TTT | TGC | ACA | CAA | CTA | AAT | CGT | GCT | TTA | AGT | GGA | ATT | GCT | ATT | GAA | CAA | GAC | AAG | AAC | ACT | CAA | GAG | GTT | TTT | GCT | CAA | GTC | AAG | CAA | ATC | TAT | AAA | ACA | CCA | CCT | ATT | AAG | GAT | TTT | GGT | GGT | TTC | AAT | TTT | TCA | CAG | ATA | TTA | CCC | GAT | CCT | TCT | AAA | CCC | AGC | AAG | AGG | TCG | TTT | ATT | GAA | GAT | TTA | CTC | TTC | AAT | AAA | GTC | ACT | CTT | GCT | GAT | GCT | GGT | TTT | ATA | AAA | CAG | TAC | GGT | GAT | TGT | TTG | GGT | GAT | ATT | TCT | GCT | AGA | GAT | TTG | ATT | TGT | GCT | CAA | AAG | TTC | AAT | GGA | CTC | ACT | GTC | TTA | CCA | CCA | TTG | CTC | ACA | GAT | GAA | ATG | ATC | GCT | GCT | TAT | ACA | GCT | GCA | TTA | ATT | AGC | GGC | ACT | GCC | ACT | GCT | GGA | TGG | ACC | TTT | GGT | GCT | GGT | GCT | GCT | CTT | CAA | ATA | CCA | TTT | GCC | ATG | CAA | ATG | GCT | TAT | AGA | TTT | AAT | GGA | ATT | GGA | GTT | ACT | CAG | AAT | GTT | CTC | TAT | GAG | AAT | CAG | AAA | TTA | ATA | GCC | AAT | CAG | TTT | AAT | AGT | GCT | ATT | GGA | AAA | ATC | CAA | GAG | TCT | TTG | ACA | TCT | ACA | GCT | AGT | GCA | CTT | GGA | AAA | TTG | CAG | GAT | GTT | GTT | AAC | CAA | AAT | GCA | CAA | GCT | TTA | AAC | ACG | CTT | GTT | AAA | CAA | CTT | AGT | TCC | AAT | TTT | GGT | GCA | ATT | TCA | AGC | GTG | TTG | AAT | GAT | ATT | CTT | TCA | CGC | CTT | GAC | AAA | GTC | GAG | GCT | GAG | GTT | CAG | ATT | GAT | AGG | TTG | ATC | ACA | GGT | AGA | CTT | CAG | AGT | TTA | CAG | ACG | TAT | GTG | ACT | CAA | CAA | TTA | ATC | AGA | GCT | GCA | GAA | ATC | AGA | GCT | TCT | GCT | AAT | CTT | GCT | GCG | ACT | AAA | ATG | TCC | GAG | TGT | GTA | CTA | GGA | CAA | TCT | AAA | AGA | GTT | GAT | TTT | TGT | GGA | AAA | GGT | TAT | CAC | CTA | ATG | TCT | TTT | CCC | CAG | TCA | GCG | CCT | CAT | GGT | GTT | GTT | TTC | TTA | CAT | GTG | ACT | TAC | ATT | CCT | TCG | CAA | GAA | AAG | AAC | TTC | ACA | ACA | GCT | CCT | GCC | ATT | TGT | CAT | GAA | GGT | AAA | GCA | CAC | TTC | CCA | CGT | GAA | GGT | GTT | TTC | GTT | TCG | AAT | GGC | ACA | CAC | TGG | TTT | GTA | ACA | CAA | AGG | AAC | TTT | TAC | GAA | CCC | CAA | ATT | ATA | ACC | ACT | GAC | AAT | ACA | TTT | GTC | TCC | GGT | AAC | TGT | GAT | GTT | GTA | ATT | GGA | ATT | ATC | AAT | AAC | ACA | GTT | TAT | GAT | CCT | TTA | CAA | CCA | GAA | CTT | GAT | TCA | TTT | AAG | GAG | GAG | TTA | GAT | AAA | TAT | TTT | AAA | AAT | CAT | ACA | TCA | CCT | GAT | ATT | GAT | CTT | GGT | GAT | ATT | TCT | GGC | ATT | AAT | GCT | TCT | GTT | GTC | AAT | ATT | CAA | AAG | GAA | ATT | GAC | CGC | CTC | AAT | GAG | GTT | GCC | AGA | AAT | TTA | AAT | GAA | TCA | CTC | ATT | GAT | CTC | CAA | GAA | CTT | GGA | AAA | TAT | GAG | CAC | TAT | ATC | AAA | TGG | CCA | TGG | TAT | GTT | TGG | CTC | GGC | TTC | ATT | GCT | GGA | CTC | ATT | GCT | ATA | GTC | ATG | GTT | ACA | ATC | CTG | CTT | TGT | TGC | ATG | ACA | AGT | TGT | TGC | AGT | TGT | CTC | AAG | GGC | TGT | TGT | TCT | TGC | GGA | TTT | TGC | TGT | AAA | TTT | GAT | GAA | GAT | GAC | TCT | GAG | CCT | GTG | CTC | AAA | GGA | GTC | AAA | TTA | CAT | TAC | ACG | TAA |
NC_004718_SARS_CoV | TAT | TTC | TTA | CTC | TCA | CTA | GTG | GTA | GTG | ACC | TTG | ACC | G---GT | GCA | CCA | CTT | TTG | ATG | ATG | TTC | A-- | AGC | TCC | TAA | TTA | CAC | --T | CAA | CAT | ACT | TCA | TCT | ATG | AGG | GGG | GTT | TAC | TAT | CCT | GAT | GAA | ATT | TTT | AGA | TCA | GAC | ACT | CTT | TAT | TTA | ACT | CAG | GAT | TTA | TTT | CTT | CCA | TTT | TAT | TCT | AAT | GTT | ACA | GGG | TTT | CAT | ACT | ATT | AAT | C-- | -AT | ACG | TTT | GGC | AAC | --- | --- | --- | --- | --- | --- | CCT | GTC | ATA | CCT | TTT | AAG | GAT | GGT | ATT | TAT | TTT | GCT | GCC | ACA | GAG | AAA | TCA | AAT | GTT | GTC | CGT | GGT | TGG | GTT | TTT | GGT | TCT | ACC | ATG | AAC | AAC | AAG | TCA | CAG | TCG | GTG | ATT | ATT | ATT | AAC | AAT | TCT | ACT | AAT | GTT | GTT | ATA | CGA | GCA | TGT | AAC | TTT | GAA | TTG | TGT | GAC | AAC | CCT | TTC | TTT | GCT | GTT | TCT | AAA | CCC | --- | --- | --- | --- | ATG | GGT | ACA | CAG | ACA | CAT | ACT | ATG | ATA | TTC | GAT | AAT | GCA | TTT | AAT | TGC | ACT | TTC | GAG | TAC | ATA | TCT | GAT | GCC | TTT | TCG | CTT | GAT | GTT | TCA | G---AA | AAG | TCA | GGT | AAT | TTT | AAA | CAC | TTA | CGA | GAG | TTT | GTG | TTT | AAA | AAT | AAA | GAT | GGG | TTT | CTC | TAT | GTT | TAT | AAG | GGC | TAT | CAA | CCT | ATA | GAT | GTA | GTT | CGT | GA------------T | CTA | CCT | TCT | GGT | TTT | AAC | ACT | TTG | AAA | CCT | ATT | TTT | AAG | TTG | CCT | CTT | GGT | ATT | AAC | ATT | ACA | AAT | TTT | AGA | GCC | ATT | CTT | ACA | GCC | TTT | TCA | CCT | GCT | CAA | GA- | --- | --- | --- | --- | --- | --C | ATT | TGG | GGC | ACG | TCA | GCT | GCA | GCC | TAT | TTT | GTT | GGC | TAT | TTA | AAG | CCA | ACT | ACA | TTT | ATG | CTC | AAG | TAT | GAT | GAA | AAT | GGT | ACA | ATC | ACA | GAT | GCT | GTT | GAT | TGT | TCT | CAA | AAT | CCA | CTT | GCT | GAA | CTC | AAA | TGC | TCT | GTT | AAG | AGC | TTT | GAG | ATT | GAC | AAA | GGA | ATT | TAC | CAG | ACC | TCT | AAT | TTC | AGG | GTT | GTT | CCC | TCA | GGA | GAT | GTT | GTG | AGA | TTC | CCT | AAT | ATT | ACA | AAC | TTG | TGT | CCT | TTT | GGA | GAG | GTT | TTT | AAT | GCT | ACT | AAA | TTC | CCT | TCT | GTC | TAT | GCA | TGG | GAG | AGA | AAA | AAA | ATT | TCT | AAT | TGT | GTT | GCT | GAT | TAC | TCT | GTG | CTC | TAC | AAC | TCA--- | ACA | TTT | TTT | TCA | ACC | TTT | AAG | TGC | TAT | GGC | GTT | TCT | GCC | ACT | AAG | TTG | AAT | GAT | CTT | TGC | TTC | TCC | AAT | GTC | TAT | GCA | GAT | TCT | TTT | GTA | GTC | AAG | GGA | GAT | GAT | GTA | AGA | CAA | ATA | GCG | CCA | GGA | CAA | ACT | GGT | GTT | ATT | GCT | GAT | TAT | AAT | TAT | AAA | TTG | CCA | GAT | GAT | TTC | ATG | GGT | TGT | GTC | CTT | GCT | TGG | AAT | ACT | AGG | AAC | ATT | GAT | GCT | ACT | TCA | ACT | GGT | AAT | TAT | AAT | TAT | AAA | TAT | AGG | TAT | CTT | AGA | CAT | GGC | AAG | CTT | AGG | CCC | TTT | GAG | AGA | GAC | ATA | TCT | AAT | GTG | CCT | TTC | TCC | CCT | GAT | GGC | AAA | CCT | TGC | ACC | CCA | CCT | GC- | --T | CTT | AAT | TGT | TAT | TGG | CCA | TTA | AAT | GAT | TAT | GGT | TTT | TAC | ACC | ACT | ACT | GGC | ATT | GGC | TAC | CAA | CCT | TAC | AGA | GTT | GTA | GTA | CTT | TCT | TTT | GAA | CTT | TTA | AAT | GCA | CCG | GCC | ACG | GTT | TGT | GGA | CCA | AAA | TTA | TCC | ACT | GAC | CTT | ATT | AAG | AAC | CAG | TGT | GTC | AAT | TTT | AAT | TTT | AAT | GGA | CTC | ACT | GGT | ACT | GGT | GTG | TTA | ACT | CCT | TCT | TCA | AAG | AGA | TTT | CAA | CCA | TTT | CAA | CAA | TTT | GGC | CGT | GAT | GTT | TCT | GAT | TTC | ACT | GAT | TCC | GTT | CGA | GAT | CCT | AAA | ACA | TCT | GAA | ATA | TTA | GAC | ATT | TCA | CCT | TGC | GCT | TTT | GGG | GGT | GTA | AGT | GTA | ATT | ACA | CCT | GGA | ACA | AAT | GCT | TCA | TCT | GAA | GTT | GCT | GTT | CTA | TAT | CAA | GAT | GTT | AAC | TGC | ACT | GAT | GTT | TCT | ACA | GCA | ATT | CAT | GCA | GAT | CAA | CTC | ACA | CCA | GCT | TGG | CGC | ATA | TAT | TCT | ACT | GGA | AAC | AAT | G------TA | TTC | CAG | ACT | CAA | GCA | GGC | TGT | CTT | ATA | GGA | GCT | GAG | CAT | GTC | GAC | ACT | TCT | TAT | GAG | TGC | GAC | ATT | CCT | ATT | GGA | GCT | GGC | ATT | TGT | GCT | AGT | TAC | CAT | ACA | GTT | TCT | TTA | T-- | --- | --- | --- | -TA | CGT | AGT | ACT | AGC | CAA | AAA | TCT | ATT | GTG | GCT | TAT | ACT | ATG | TCT | TTA | GGT | GCT | GAT | AGT | TCA | ATT | GCT | TAC | TCT | AAT | AAC | ACC | ATT | GCT | ATA | CCT | ACT | AAC | TTT | TCA | ATT | AGC | ATT | ACT | ACA | GAA | GTA | ATG | CCT | GTT | TCT | ATG | GCT | AAA | ACC | TCC | GTA | GAT | TGT | AAT | ATG | TAC | ATC | TGC | GGA | GAT | TCT | ACT | GAA | TGT | GCT | AAT | TTG | CTT | CTC | CAA | TAT | GGT | AGC | TTT | TGC | ACA | CAA | CTA | AAT | CGT | GCA | CTC | TCA | GGT | ATT | GCT | GCT | GAA | CAG | GAT | CGC | AAC | ACA | CGT | GAA | GTG | TTC | GCT | CAA | GTC | AAA | CAA | ATG | TAC | AAA | ACC | CCA | ACT | TTG | AAA | TAT | TTT | GGT | GGT | TTT | AAT | TTT | TCA | CAA | ATA | TTA | CCT | GAC | CCT | CTA | AAG | CCA | ACT | AAG | AGG | TCT | TTT | ATT | GAG | GAC | TTG | CTC | TTT | AAT | AAG | GTG | ACA | CTC | GCT | GAT | GCT | GGC | TTC | ATG | AAG | CAA | TAT | GGC | GAA | TGC | CTA | GGT | GAT | ATT | AAT | GCT | AGA | GAT | CTC | ATT | TGT | GCG | CAG | AAG | TTC | AAT | GGA | CTT | ACA | GTG | TTG | CCA | CCT | CTG | CTC | ACT | GAT | GAT | ATG | ATT | GCT | GCC | TAC | ACT | GCT | GCT | CTA | GTT | AGT | GGT | ACT | GCC | ACT | GCT | GGA | TGG | ACA | TTT | GGT | GCT | GGC | GCT | GCT | CTT | CAA | ATA | CCT | TTT | GCT | ATG | CAA | ATG | GCA | TAT | AGG | TTC | AAT | GGC | ATT | GGA | GTT | ACC | CAA | AAT | GTT | CTC | TAT | GAG | AAC | CAA | AAA | CAA | ATC | GCC | AAC | CAA | TTT | AAC | AAG | GCG | ATT | AGT | CAA | ATT | CAA | GAA | TCA | CTT | ACA | ACA | ACA | TCA | ACT | GCA | TTG | GGC | AAG | CTG | CAA | GAC | GTT | GTT | AAC | CAG | AAT | GCT | CAA | GCA | TTA | AAC | ACA | CTT | GTT | AAA | CAA | CTT | AGC | TCT | AAT | TTT | GGT | GCA | ATT | TCA | AGT | GTG | CTA | AAT | GAT | ATC | CTT | TCG | CGA | CTT | GAT | AAA | GTC | GAG | GCG | GAG | GTA | CAA | ATT | GAC | AGG | TTA | ATT | ACA | GGC | AGA | CTT | CAA | AGC | CTT | CAA | ACC | TAT | GTA | ACA | CAA | CAA | CTA | ATC | AGG | GCT | GCT | GAA | ATC | AGG | GCT | TCT | GCT | AAT | CTT | GCT | GCT | ACT | AAA | ATG | TCT | GAG | TGT | GTT | CTT | GGA | CAA | TCA | AAA | AGA | GTT | GAC | TTT | TGT | GGA | AAG | GGC | TAC | CAC | CTT | ATG | TCC | TTC | CCA | CAA | GCA | GCC | CCG | CAT | GGT | GTT | GTC | TTC | CTA | CAT | GTC | ACG | TAT | GTG | CCA | TCC | CAG | GAG | AGG | AAC | TTC | ACC | ACA | GCG | CCA | GCA | ATT | TGT | CAT | GAA | GGC | AAA | GCA | TAC | TTC | CCT | CGT | GAA | GGT | GTT | TTT | GTG | TTT | AAT | GGC | ACT | TCT | TGG | TTT | ATT | ACA | CAG | AGG | AAC | TTC | TTT | TCT | CCA | CAA | ATA | ATT | ACT | ACA | GAC | AAT | ACA | TTT | GTC | TCA | GGA | AAT | TGT | GAT | GTC | GTT | ATT | GGC | ATC | ATT | AAC | AAC | ACA | GTT | TAT | GAT | CCT | CTG | CAA | CCT | GAG | CTT | GAC | TCA | TTC | AAA | GAA | GAG | CTG | GAC | AAG | TAC | TTC | AAA | AAT | CAT | ACA | TCA | CCA | GAT | GTT | GAT | CTT | GGC | GAC | ATT | TCA | GGC | ATT | AAC | GCT | TCT | GTC | GTC | AAC | ATT | CAA | AAA | GAA | ATT | GAC | CGC | CTC | AAT | GAG | GTC | GCT | AAA | AAT | TTA | AAT | GAA | TCA | CTC | ATT | GAC | CTT | CAA | GAA | TTG | GGA | AAA | TAT | GAG | CAA | TAT | ATT | AAA | TGG | CCT | TGG | TAT | GTT | TGG | CTC | GGC | TTC | ATT | GCT | GGA | CTA | ATT | GCC | ATC | GTC | ATG | GTT | ACA | ATC | TTG | CTT | TGT | TGC | ATG | ACT | AGT | TGT | TGC | AGT | TGC | CTC | AAG | GGT | GCA | TGC | TCT | TGT | GGT | TCT | TGC | TGC | AAG | TTT | GAT | GAG | GAT | GAC | TCT | GAG | CCA | GTT | CTC | AAG | GGT | GTC | AAA | TTA | CAT | TAC | ACA | TAA |
KT444582_SARS_like_CoV_WIV16 | TCT | TTC | TCA | CTC | TCA | CTA | GTG | GTA | GTG | ACC | TTG | AGA | G---TT | GTA | CCA | CTT | TTG | ATG | ATG | TTC | A-- | AGC | CCC | TAA | TTA | CCC | --T | CAA | CAC | TCT | TCA | TCC | AGG | AGA | GGG | GTT | TAT | TAT | CCT | GAT | GAA | ATC | TTT | AGA | TCA | GAC | ACT | CTT | TAT | TTA | ACT | CAG | GAT | CTA | TTT | CTT | CCA | TTC | TAT | TCT | AAT | GTC | ACA | GGG | TTT | CAT | ACT | ATT | AAT | C-- | -AT | AGG | TTT | GAC | AAC | --- | --- | --- | --- | --- | --- | CCT | GTC | ATA | CCT | TTT | AAG | GAT | GGT | GTT | TAT | TTT | GCT | GCC | ACT | GAG | AAA | TCA | AAT | GTT | GTC | CGT | GGT | TGG | GTT | TTT | GGC | TCT | ACC | ATG | AAC | AAC | AAG | TCT | CAG | TCG | GTG | ATT | ATC | ATC | AAT | AAT | TCT | ACT | AAT | GTT | GTT | ATA | CGA | GCA | TGT | AAT | TTT | GAG | TTG | TGT | GAC | AAC | CCT | TTC | TTT | GCT | GTC | TCT | AAA | CCT | --- | --- | --- | --- | ACG | GGA | ACA | CAG | ACA | CAC | ACT | ATG | ATA | TTC | GAC | AAT | GCA | TTT | AAT | TGC | ACT | TTC | GAA | TAC | ATA | TCA | GAC | TCC | TTT | TCG | CTC | GAT | GTT | GCT | G---AA | AAG | TCA | GGT | AAT | TTT | AAA | CAC | TTA | CGA | GAG | TTT | GTG | TTT | AAA | AAT | AAG | GAT | GGG | TTT | CTC | TAT | GTT | TAC | AAG | GGT | TAT | CAA | CCT | ATA | GAC | GTA | GTC | CGT | GA------------T | CTA | CCA | TCT | GGC | TTT | AAT | ATT | TTG | AAA | CCT | ATT | TTT | AAG | TTA | CCT | CTT | GGT | ATT | AAC | ATT | ACA | AAT | TTT | AGA | GCC | ATT | CTT | ACA | GCA | TTT | TTG | CCT | GCT | CAA | GA- | --- | --- | --- | --- | --- | --C | ACT | TGG | GGT | ACA | TCA | GCT | GCT | GCT | TAT | TTT | GTT | GGC | TAT | TTA | AAG | CCA | GCT | ACA | TTC | ATG | CTT | AAG | TAT | GAT | GAA | AAT | GGT | ACA | ATC | ACA | GAT | GCT | GTT | GAT | TGT | TCT | CAA | AAT | CCC | CTT | GCT | GAA | CTC | AAA | TGT | TCT | GTT | AAA | AGT | TTT | GAG | ATT | GAT | AAA | GGA | ATT | TAC | CAA | ACC | TCC | AAT | TTT | AGG | GTA | GCA | CCC | TCA | AAG | GAA | GTT | GTG | AGG | TTC | CCT | AAT | ATT | ACA | AAC | CTG | TGT | CCT | TTT | GGG | GAG | GTT | TTT | AAT | GCT | ACT | ACA | TTT | CCT | TCT | GTC | TAT | GCA | TGG | GAG | AGG | AAA | AGA | ATT | TCT | AAT | TGT | GTT | GCT | GAT | TAC | TCT | GTA | CTC | TAC | AAC | TCA--- | ACA | TCT | TTT | TCA | ACT | TTT | AAG | TGT | TAT | GGC | GTT | TCT | GCC | ACT | AAG | CTG | AAT | GAT | CTT | TGC | TTC | TCC | AAT | GTC | TAT | GCA | GAT | TCA | TTT | GTA | GTC | AAA | GGA | GAC | GAT | GTA | AGG | CAA | ATA | GCA | CCA | GGA | CAG | ACC | GGT | GTT | ATT | GCT | GAT | TAT | AAT | TAC | AAA | TTG | CCA | GAT | GAT | TTC | ACG | GGT | TGT | GTC | CTT | GCT | TGG | AAT | ACT | AGG | AAC | ATT | GAT | GCT | ACT | CAA | ACT | GGT | AAT | TAT | AAT | TAT | AAA | TAT | AGA | TCT | CTC | AGA | CAT | GGC | AAG | CTT | AGG | CCT | TTT | GAG | AGA | GAT | ATT | TCT | AAT | GTG | CCT | TTC | TCT | CCT | GAT | GGC | AAA | CCT | TGT | ACC | CCA | CCT | GC- | --T | TTT | AAT | TGT | TAT | TGG | CCA | TTA | AAT | GAT | TAT | GGT | TTT | TAC | ATC | ACT | AAT | GGC | ATA | GGC | TAC | CAA | CCT | TAT | AGA | GTT | GTA | GTT | CTT | TCT | TTT | GAA | CTT | CTA | AAT | GCA | CCT | GCT | ACG | GTT | TGT | GGA | CCA | AAA | TTG | TCC | ACT | GAC | CTT | ATT | AAA | AAT | CAA | TGT | GTC | AAT | TTT | AAC | TTT | AAT | GGA | CTC | ACT | GGT | ACT | GGT | GTG | TTA | ACT | CCT | TCT | TCA | AAG | AGA | TTT | CAA | CCA | TTT | CAA | CAA | TTT | GGT | CGT | GAT | GTT | TTG | GAT | TTC | ACT | GAT | TCA | GTT | CGA | GAT | CCG | AAG | ACG | TCT | GAA | ATA | TTA | GAC | ATT | TCA | CCT | TGC | TCT | TTT | GGC | GGT | GTA | AGT | GTA | ATC | ACA | CCT | GGA | ACA | AAT | ACT | TCA | TCA | GAA | GTT | GCT | GTT | CTA | TAT | CAA | GAT | GTT | AAC | TGC | ACT | GAT | GTT | CCT | GTA | GCA | ATC | CAT | GCA | GAC | CAA | CTC | ACA | CCT | TCT | TGG | CGC | GTA | TAC | TCT | ACT | GGA | AAT | AAT | G------TA | TTT | CAA | ACC | CAG | GCA | GGC | TGT | CTT | ATA | GGA | GCT | GAG | CAT | GTC | GAC | ACT | TCT | TAT | GAG | TGC | GAC | ATT | CCT | ATT | GGA | GCT | GGC | ATT | TGT | GCT | AGT | TAC | CAT | ACA | GTT | TCT | TCA | T-- | --- | --- | --- | -TA | CGT | AGT | ACT | AGC | CAA | AAA | TCT | ATT | GTG | GCT | TAT | ACT | ATG | TCT | TTA | GGT | GCT | GAT | AGT | TCA | ATT | GCT | TAC | TCT | AAT | AAC | ACC | ATT | GCT | ATA | CCT | ACT | AAC | TTT | TCA | ATT | AGC | ATT | ACT | ACA | GAA | GTA | ATG | CCT | GTT | TCT | ATG | GCT | AAA | ACC | TCT | GTA | GAT | TGT | AAT | ATG | TAC | ATC | TGC | GGA | GAT | TCT | ACT | GAA | TGT | GCT | AAT | TTG | CTT | CTC | CAA | TAT | GGT | AGC | TTT | TGC | ACA | CAA | CTA | AAT | CGT | GCA | CTC | TCA | GGT | ATT | GCT | GTT | GAA | CAG | GAT | CGC | AAC | ACA | CGT | GAA | GTG | TTC | GCT | CAA | GTC | AAA | CAA | ATG | TAC | AAA | ACC | CCA | ACT | TTG | AAA | GAT | TTT | GGT | GGT | TTT | AAT | TTT | TCA | CAA | ATA | TTA | CCT | GAC | CCT | CTA | AAG | CCA | ACT | AAG | AGG | TCT | TTT | ATT | GAG | GAC | TTG | CTC | TTT | AAT | AAG | GTG | ACA | CTC | GCT | GAT | GCT | GGC | TTT | ATG | AAG | CAA | TAT | GGC | GAA | TGC | CTA | GGT | GAT | ATT | AAT | GCT | AGA | GAT | CTC | ATT | TGT | GCG | CAG | AAG | TTC | AAT | GGA | CTT | ACA | GTG | CTG | CCA | CCT | CTG | CTC | ACT | GAT | GAT | ATG | ATT | GCT | GCC | TAC | ACT | GCT | GCT | CTA | GTT | AGT | GGT | ACT | GCC | ACT | GCT | GGA | TGG | ACA | TTC | GGT | GCT | GGC | GCT | GCT | CTT | CAA | ATA | CCT | TTT | GCT | ATG | CAA | ATG | GCA | TAT | AGG | TTC | AAT | GGC | ATT | GGA | GTT | ACT | CAA | AAT | GTT | CTC | TAT | GAG | AAC | CAA | AAA | CAA | ATC | GCC | AAT | CAA | TTT | AAC | AAG | GCG | ATC | AGC | CAA | ATT | CAA | GAA | TCA | CTC | ACA | ACA | ACA | TCC | ACT | GCA | TTG | GGC | AAG | CTG | CAA | GAT | GTC | GTC | AAC | CAG | AAT | GCT | CAA | GCA | TTA | AAC | ACA | CTT | GTT | AAA | CAA | CTT | AGC | TCC | AAT | TTT | GGT | GCG | ATT | TCA | AGT | GTG | CTA | AAT | GAT | ATC | CTT | TCG | CGA | CTT | GAT | AAA | GTC | GAG | GCA | GAG | GTA | CAA | ATT | GAC | AGG | TTA | ATT | ACA | GGC | AGA | CTG | CAA | AGC | CTT | CAA | ACC | TAT | GTA | ACA | CAA | CAA | CTA | ATC | AGG | GCT | GCT | GAA | ATC | AGG | GCT | TCT | GCT | AAT | CTT | GCT | GCT | ACT | AAA | ATG | TCT | GAG | TGT | GTT | CTT | GGA | CAA | TCA | AAA | AGA | GTT | GAC | TTT | TGC | GGA | AAG | GGC | TAC | CAT | CTT | ATG | TCC | TTC | CCA | CAA | GCA | GCC | CCG | CAT | GGT | GTT | GTC | TTC | CTA | CAT | GTC | ACA | TAT | GTG | CCA | TCT | CAA | GAG | AGA | AAC | TTC | ACC | ACA | GCG | CCA | GCA | ATT | TGT | CAT | GAA | GGC | AAA | GCA | TAC | TTC | CCT | CGT | GAA | GGT | GTT | TTT | GTG | TTT | AAT | GGC | ACT | TCG | TGG | TTT | ATT | ACA | CAG | AGG | AAC | TTC | TTT | TCT | CCA | CAA | ATA | ATT | ACT | ACA | GAC | AAT | ACA | TTT | GTC | TCC | GGA | AGT | TGT | GAT | GTC | GTA | ATT | GGC | ATC | ATT | AAC | AAT | ACA | GTT | TAT | GAT | CCT | CTG | CAA | CCT | GAG | CTT | GAC | TCA | TTC | AAA | GAA | GAG | CTG | GAC | AAG | TAC | TTC | AAA | AAT | CAC | ACA | TCA | CCA | GAT | GTT | GAT | CTT | GGC | GAC | ATT | TCA | GGC | ATT | AAC | GCT | TCT | GTC | GTC | AAC | ATT | CAA | AAA | GAA | ATT | GAC | CGC | CTC | AAT | GAG | GTC | GCT | AAA | AAT | TTA | AAT | GAA | TCA | CTC | ATT | GAC | CTT | CAA | GAA | TTG | GGA | AAA | TAT | GAG | CAA | TAT | ATT | AAA | TGG | CCT | TGG | TAT | GTT | TGG | CTC | GGC | TTC | ATT | GCT | GGA | CTA | ATT | GCC | ATC | GTC | ATG | GTT | ACA | ATC | TTG | CTT | TGT | TGC | ATG | ACT | AGT | TGT | TGC | AGT | TGC | CTC | AAG | GGT | GCA | TGC | TCT | TGT | GGT | TCT | TGC | TGC | AAG | TTT | GAT | GAG | GAT | GAC | TCT | GAG | CCA | GTT | CTC | AAG | GGT | GTC | AAA | TTA | CAT | TAC | ACA | TAA |
KY417146_Bat_SARS_like_CoV_Rs4231 | TCT | TTC | TCA | CTC | TCA | CTA | GTG | GTA | GTG | ACC | TTG | AGA | G---TT | GTA | CCA | CTT | TTG | ATG | ATG | TTC | A-- | AGC | CCC | TAA | TTA | CCC | --T | CAA | CAC | TCT | TCA | TCC | AGG | AGA | GGG | GTT | TAT | TAT | CCT | GAT | GAA | ATC | TTT | AGA | TCA | GAC | ACT | CTT | TAT | TTA | ACT | CAG | GAT | CTA | TTT | CTT | CCA | TTC | TAT | TCT | AAT | GTC | ACA | GGG | TTT | CAT | ACT | ATT | AAT | C-- | -AT | AGG | TTT | GAC | AAC | --- | --- | --- | --- | --- | --- | CCT | GTC | ATA | CCT | TTT | AAG | GAT | GGT | GTT | TAT | TTT | GCT | GCC | ACT | GAG | AAA | TCA | AAT | GTT | GTC | CGT | GGT | TGG | GTT | TTT | GGC | TCT | ACC | ATG | AAC | AAC | AAG | TCT | CAG | TCG | GTG | ATT | ATC | ATC | AAT | AAT | TCT | ACT | AAT | GTT | GTT | ATA | CGA | GCA | TGT | AAT | TTT | GAG | TTG | TGT | GAC | AAC | CCT | TTC | TTT | GCT | GTC | TCT | AAA | CCT | --- | --- | --- | --- | ACG | GGA | ACA | CAG | ACA | CAC | ACT | ATG | ATA | TTC | GAC | AAT | GCA | TTT | AAT | TGC | ACT | TTC | GAA | TAC | ATA | TCA | GAC | TCC | TTT | TCG | CTC | GAT | GTT | GCT | G---AA | AAG | TCA | GGT | AAT | TTT | AAA | CAC | TTA | CGA | GAG | TTT | GTG | TTT | AAA | AAT | AAG | GAT | GGG | TTT | CTC | TAT | GTT | TAC | AAG | GGT | TAT | CAA | CCT | ATA | GAC | GTA | GTC | CGT | GA------------T | CTA | CCA | TCT | GGC | TTT | AAT | ATT | TTG | AAA | CCT | ATT | TTT | AAG | TTA | CCT | CTT | GGT | ATT | AAC | ATT | ACA | AAT | TTT | AGA | GCC | ATT | CTT | ACA | GCA | TTT | TTG | CCT | GCT | CAA | GA- | --- | --- | --- | --- | --- | --C | ACT | TGG | GGT | ACA | TCA | GCT | GCT | GCT | TAT | TTT | GTT | GGC | TAT | TTA | AAG | CCA | GCT | ACA | TTC | ATG | CTT | AAG | TAT | GAT | GAA | AAT | GGT | ACA | ATC | ACA | GAT | GCT | GTT | GAT | TGT | TCT | CAA | AAT | CCC | CTT | GCT | GAA | CTC | AAA | TGT | TCT | GTT | AAA | AGT | TTT | GAG | ATT | GAT | AAA | GGA | ATT | TAC | CAA | ACC | TCC | AAT | TTT | AGG | GTA | GCA | CCC | TCA | AAG | GAA | GTT | GTG | AGG | TTC | CCT | AAT | ATT | ACA | AAC | CTG | TGT | CCT | TTT | GGG | GAG | GTT | TTT | AAT | GCT | ACT | ACA | TTT | CCT | TCT | GTC | TAT | GCA | TGG | GAG | AGG | AAA | AGA | ATT | TCT | AAT | TGT | GTT | GCT | GAT | TAC | TCT | GTA | CTC | TAC | AAC | TCA--- | ACA | TCT | TTT | TCA | ACT | TTT | AAG | TGT | TAT | GGC | GTT | TCT | GCC | ACT | AAG | CTG | AAT | GAC | CTT | TGC | TTC | TCC | AAC | GTC | TAT | GCA | GAT | TCA | TTC | GTA | GTC | AAA | GGA | GAT | GAT | GTA | AGG | CAA | ATA | GCA | CCA | GGA | CAG | ACC | GGT | GTT | ATT | GCT | GAT | TAT | AAT | TAC | AAA | TTA | CCA | GAT | GAC | TTC | TTG | GGT | TGT | GTC | CTA | GCA | TGG | AAC | ACC | AAT | TCT | AAA | GAT | TCT | TCC | ACT | TCC | GGT | AAT | TAT | AAT | TAT | TTA | TAT | AGA | TGG | GTT | AGA | AGG | TCT | AAG | CTT | AAC | CCT | TAT | GAG | CGC | GAC | TTA | TCT | AAC | GAC | ATC | TAT | TCA | CCT | GGA | GGT | CAG | TCT | TGC | TCA | GCT | ATA | GG- | --T | CCT | AAT | TGT | TAT | AAC | CCC | TTA | CGT | CCA | TAT | GGC | TTT | TTT | ACA | ACA | GCT | GGT | GTT | GGA | CAC | CAA | CCT | TAT | AGA | GTT | GTA | GTA | CTT | TCT | TTT | GAA | CTT | TTA | AAT | GCA | CCC | GCT | ACA | GTC | TGT | GGA | CCA | AAA | TTA | TCC | ACT | GAC | CTT | ATT | AAA | AAC | CAG | TGT | GTC | AAT | TTT | AAC | TTT | AAT | GGA | CTC | ACT | GGT | ACT | GGT | GTG | TTA | ACT | TCT | TCC | TCA | AAG | AGA | TTT | CAA | CCA | TTT | CAA | CAA | TTT | GGT | CGT | GAT | GTT | TCG | GAT | TTC | ACT | GAT | TCA | GTT | CGA | GAC | CCG | AAG | ACA | TCT | GAA | ATA | TTA | GAC | ATT | TCA | CCT | TGC | TCT | TTT | GGC | GGT | GTA | AGT | GTA | ATT | ACA | CCT | GGA | ACA | AAT | ACT | TCA | TCA | GAA | GTT | GCT | GTT | CTA | TAT | CAA | GAT | GTT | AAT | TGC | ACT | GAT | GTT | CCT | GTA | GCA | ATC | CAT | GCA | GAC | CAA | CTC | ACA | CCT | GCT | TGG | CGC | ATA | TAC | TCT | ACT | GGA | AAT | AAT | G------TA | TTT | CAA | ACT | CAG | GCA | GGC | TGT | CTT | ATA | GGA | GCT | GAG | CAT | GTC | GAC | ACT | TCT | TAT | GAG | TGC | GAC | ATT | CCT | ATT | GGA | GCT | GGC | ATT | TGT | GCT | AGT | TAC | CAC | ACA | GTT | TCT | TCA | C-- | --- | --- | --- | -TA | CGT | AGT | ACT | AGC | CAA | AAA | TCT | ATT | GTG | GCT | TAT | ACT | ATG | TCT | TTA | GGT | GCT | GAT | AGT | TCA | ATT | GCT | TAC | TCT | AAT | AAC | ACC | ATT | GCT | ATA | CCT | ACT | AAT | TTT | TCA | ATT | AGC | ATT | ACT | ACA | GAA | GTA | ATG | CCT | GTT | TCT | ATG | GCT | AAA | ACC | TCC | GTA | GAT | TGT | AAT | ATG | TAC | ATC | TGC | GGC | GAT | TCT | ACT | GAA | TGT | GCT | AAT | TTG | CTT | CTC | CAA | TAT | GGT | AGC | TTT | TGC | ACA | CAA | TTA | AAT | CGT | GCA | CTC | TCA | GGT | ATC | GCT | GTC | GAA | CAG | GAC | CGC | AAC | ACG | CGT | GAA | GTG | TTC | GCT | CAA | GTG | AAA | CAG | ATG | TAC | AAA | ACC | CCA | GCT | TTG | AAA | GAT | TTC | GGT | GGT | TTT | AAT | TTT | TCA | CAA | ATA | TTA | CCT | GAC | CCT | CTA | AAG | CCA | ACT | AAG | AGA | TCT | TTT | ATT | GAG | GAC | TTG | CTC | TTT | AAT | AAG | GTG | ACA | CTC | GCT | GAT | GCT | GGC | TTT | ATG | AAG | CAA | TAT | GGC | GAA | TGC | CTA | GGT | GAT | GTT | AAT | GCT | AGA | GAT | CTC | ATT | TGT | GCG | CAG | AAG | TTC | AAT | GGA | CTT | ACA | GTG | TTG | CCA | CCT | CTG | CTC | ACT | GAT | GAT | ATG | ATT | GCT | GCC | TAC | ACT | GCT | GCT | CTA | GTT | AGT | GGT | ACT | GCC | ACT | GCT | GGA | TGG | ACA | TTT | GGT | GCT | GGC | GCT | GCT | CTT | CAA | ATA | CCT | TTT | GCT | ATG | CAA | ATG | GCA | TAT | AGG | TTC | AAT | GGC | ATT | GGA | GTT | ACC | CAA | AAT | GTT | CTC | TAT | GAG | AAC | CAA | AAA | CAA | ATC | GCC | AAT | CAA | TTT | AAT | AAG | GCG | ATT | AGC | CAA | ATT | CAA | GAA | TCA | CTT | ACA | ACT | ACA | TCC | ACT | GCA | TTG | GGC | AAG | CTG | CAA | GAC | GTT | GTT | AAC | CAG | AAT | GCT | CAA | GCA | TTA | AAC | ACA | CTT | GTT | AAA | CAA | CTT | AGC | TCC | AAT | TTT | GGT | GCT | ATT | TCA | AGT | GTG | TTA | AAT | GAT | ATC | CTT | TCG | CGA | CTT | GAT | AAA | GTC | GAG | GCG | GAG | GTA | CAA | ATT | GAC | AGG | TTA | ATT | ACA | GGC | AGA | CTG | CAA | AGC | CTG | CAA | ACC | TAT | GTA | ACA | CAA | CAA | CTA | ATC | AGG | GCT | GCT | GAA | ATC | AGG | GCT | TCT | GCT | AAT | CTT | GCT | GCT | ACT | AAA | ATG | TCT | GAG | TGT | GTT | CTT | GGA | CAA | TCA | AAA | AGA | GTT | GAC | TTT | TGC | GGA | AAA | GGC | TAC | CAT | CTC | ATG | TCC | TTC | CCG | CAA | GCA | GCC | CCG | CAT | GGT | GTT | GTC | TTC | CTA | CAT | GTC | ACA | TGT | GTG | CCA | TCC | CAA | GAG | AGA | AAC | TTC | ACC | ACT | GCG | CCA | GCA | ATT | TGT | CAC | GAA | GGC | AAA | GCA | TAC | TTC | CCG | CGT | GAA | GGT | GTT | TTT | GTT | TTT | AAT | GGC | ACT | TCT | TGG | TTT | ATT | ACA | CAG | AGG | AAC | TTC | TTT | TCT | CCA | CAA | ATA | ATT | ACT | ACA | GAC | AAT | ACA | TTT | GTC | TCT | GGG | AGT | TGT | GAT | GTC | GTA | ATT | GGC | ATC | ATT | AAC | AAC | ACA | GTT | TAT | GAT | CCT | CTG | CAA | CCT | GAG | CTT | GAC | TCA | TTC | AAA | GAA | GAG | CTG | GAC | AAG | TAC | TTC | AAA | AAT | CAC | ACA | TCA | CCA | GAT | GTT | GAT | CTC | GGC | GAC | ATT | TCA | GGC | ATT | AAC | GCT | TCC | GTC | GTC | AAT | ATT | CAG | AAA | GAA | ATT | GAC | CGC | CTC | AAT | GAG | GTC | GCC | AAA | AAT | TTA | AAT | GAA | TCA | CTC | ATT | GAC | CTT | CAA | GAA | TTG | GGA | AAA | TAT | GAG | CAA | TAC | ATT | AAA | TGG | CCT | TGG | TAT | GTT | TGG | CTC | GGC | TTC | ATT | GCT | GGA | CTA | ATT | GCC | ATC | GTC | ATG | GTT | ACA | ATC | TTG | CTT | TGC | TGC | ATG | ACT | AGT | TGT | TGC | AGT | TGC | CTC | AAG | GGT | GCA | TGC | TCT | TGT | GGT | TCT | TGC | TGC | AAA | TTT | GAT | GAG | GAT | GAC | TCT | GAG | CCG | GTT | CTC | AAG | GGT | GTC | AAA | TTA | CAT | TAC | ACA | TAA |
MK211376_CoV_BtRs_BetaCoV_YN2018B | TTT | TTG | CTA | CTT | TGG | TCT | CTT | CTT | ACA | CTA | TAG | AGA | A---GT | GCA | CTG | ACT | TTG | ATG | ATC | GCA | C-- | TCC | ACC | TTC | AAA | CAC | --T | CAA | TTT | CTG | TCT | TCT | CAC | AGA | GGT | GTT | TAT | TAC | CCA | GAT | GAT | ATT | TTT | AGG | TCT | AAT | GTC | TTG | CAT | TTA | GTA | CAA | GAT | CAC | TTT | CTA | CCT | TTT | GAC | TCT | AAT | GTC | ACT | AGG | TTT | ATA | ACA | TTT | GGC | C-- | -TA | AAT | TTT | GAT | AAT | --- | --- | --- | --- | --- | --- | CCC | ATA | ATA | CCC | TTT | AGG | GAT | GGT | GTT | TAC | TTT | GCT | GCG | ACT | GAA | AAG | TCT | AAT | GTT | ATT | AGA | GGA | TGG | GTT | TTT | GGT | TCT | ACA | ATG | AAC | AAT | AAA | TCT | CAA | TCC | GTT | ATA | ATA | ATG | AAC | AAC | TCA | ACT | AAT | TTA | GTC | ATT | AGG | GCT | TGT | AAT | TTT | GAG | TTG | TGT | GAC | AAT | CCA | TTC | TTT | GTT | GTG | TTG | AGA | TCC | --- | --- | --- | --- | AAC | AAC | ACT | CAG | ATA | CCG | TCT | TAC | ATA | TTC | AAT | AAT | GCA | TTC | AAT | TGC | ACA | TTT | GAA | TAT | GTT | TCT | AAG | GAT | TTT | AAC | CTT | GAC | ATT | GGT | G---AA | AAA | CCA | GGT | AAT | TTC | AAG | GAT | CTT | AGA | GAG | TTT | GTT | TTC | AGG | AAT | AAA | GAT | GGT | TTT | TTG | CAT | GTT | TAC | TCT | GGT | TAC | CAA | CCC | ATT | TCT | GCT | GCT | AGT | GG------------C | TTG | CCA | ACT | GGT | TTT | AAT | GCA | CTT | AAA | CCT | ATT | TTT | AAG | TTA | CCT | CTG | GGT | ATT | AAT | ATT | ACT | AAT | TTC | AGA | ACT | CTT | CTG | ACT | GCT | TTT | CCT | CCT | AAC | CCT | GG- | --- | --- | --- | --- | --- | --T | TAT | TGG | GGT | ACT | TCA | GCT | GCA | GCT | TAT | TTT | GTA | GGA | TAT | TTA | AAG | CCA | ACT | ACA | TTC | ATG | CTC | AAG | TAT | GAT | GAA | AAT | GGT | ACA | ATC | ACA | GAT | GCT | GTC | GAT | TGT | TCT | CAA | AAT | CCA | CTT | GCT | GAA | CTC | AAA | TGC | TCT | GTT | AAA | AGT | TTT | GAG | ATT | GAC | AAA | GGA | ATT | TAC | CAA | ACC | TCC | AAT | TTT | AGG | GTA | GCA | CCC | TCA | AAG | GAA | GTT | GTG | AGG | TTC | CCT | AAT | ATT | ACA | AAC | CTG | TGT | CCT | TTT | GGA | GAG | GTT | TTT | AAT | GCT | ACT | ACA | TTT | CCT | TCT | GTC | TAT | GCA | TGG | GAG | AGG | AAA | AGA | ATT | TCT | AAT | TGT | GTT | GCT | GAT | TAC | TCT | GTA | CTC | TAC | AAC | TCA--- | ACA | TCT | TTT | TCA | ACT | TTT | AAG | TGT | TAT | GGC | GTT | TCT | GCC | ACT | AAG | CTG | AAT | GAT | CTT | TGC | TTC | TCT | AAT | GTC | TAT | GCA | GAT | TCA | TTC | GTA | GTC | AAA | GGA | GAT | GAT | GTA | AGG | CAA | ATA | GCA | CCA | GGA | CAG | ACC | GGT | GTT | ATT | GCT | GAT | TAT | AAT | TAT | AAA | TTG | CCA | GAT | GAT | TTT | ATG | GGT | TGT | GTC | CTT | GCT | TGG | AAT | ACT | AGG | AAC | ATT | GAT | GCT | ACT | TCA | ACT | GGT | AAT | TAT | AAT | TAT | AAA | TAT | AGA | TCT | CTC | AGA | CAT | GGC | AAG | CTT | AGG | CCC | TTT | GAG | AGA | GAC | ATT | TCT | AAT | GTG | CCT | TTC | TCC | CCT | GAT | GGC | AAA | CCA | TGT | ACC | CCA | CCT | GC- | --T | TTC | AAC | TGT | TAC | TGG | CCA | TTA | AAT | GAT | TAT | GGT | TTT | TTC | ACT | ACT | AAT | GGC | ATA | GGC | TAT | CAA | CCC | TAT | AGA | GTT | GTA | GTA | CTT | TCT | TTT | GAA | CTT | TTA | AAT | GCA | CCT | GCT | ACA | GTC | TGT | GGA | CCA | AAA | TTA | TCC | ACT | GAC | CTT | ATT | AAA | AAC | CAG | TGT | GTC | AAT | TTT | AAC | TTT | AAT | GGA | CTC | ACT | GGT | ACT | GGT | GTG | TTA | ACT | CCT | TCT | TCA | AAG | AGA | TTT | CAA | CCA | TTT | CAA | CAA | TTT | GGT | CGT | GAT | GTT | TCG | GAT | TTC | ACT | GAT | TCA | GTT | CGA | GAT | CCT | AAA | ACG | TCT | GAA | ATA | TTA | GAC | ATT | TCA | CCT | TGC | TCT | TTT | GGC | GGT | GTA | AGT | GTA | ATT | ACA | CCC | GGA | ACA | AAT | ACT | TCA | TCA | GAA | GTT | GCT | GTT | CTA | TAT | CAA | GAT | GTT | AAC | TGC | ACT | GAT | GTT | CCT | GTA | GCA | ATC | CAT | GCA | GAC | CAA | CTC | ACA | CCT | GCT | TGG | CGC | ATA | TAT | TCT | ACT | GGA | AAT | AAT | G------TA | TTT | CAA | ACT | CAG | GCA | GGC | TGT | CTT | ATA | GGA | GCT | GAG | CAT | GTC | GAC | ACT | TCT | TAT | GAG | TGC | GAC | ATT | CCT | ATT | GGA | GCT | GGC | ATT | TGT | GCT | AGT | TAC | CAC | ACA | GTT | TCT | TCA | C-- | --- | --- | --- | -TA | CGT | AGT | ACT | AGC | CAA | AAA | TCT | ATT | GTG | GCT | TAT | ACT | ATG | TCT | TTA | GGT | GCT | GAT | AGT | TCA | ATT | GCT | TAC | TCT | AAT | AAC | ACC | ATT | GCT | ATA | CCT | ACT | AAT | TTT | TCA | ATT | AGC | ATT | ACT | ACA | GAA | GTA | ATG | CCT | GTT | TCT | ATG | GCT | AAA | ACC | TCC | GTA | GAT | TGT | AAT | ATG | TAC | ATC | TGC | GGC | GAT | TCT | ACT | GAA | TGT | GCT | AAT | TTG | CTT | CTC | CAA | TAT | GGT | AGC | TTT | TGC | ACA | CAA | TTA | AAT | CGT | GCA | CTC | TCA | GGT | ATC | GCT | GTT | GAA | CAG | GAT | CGC | AAC | ACA | CGT | GAA | GTG | TTC | GCT | CAA | GTG | AAA | CAA | ATG | TAC | AAA | ACC | CCA | ACT | TTG | AAA | GAT | TTT | GGT | GGT | TTT | AAT | TTT | TCA | CAA | ATA | TTA | CCT | GAC | CCT | CTA | AAG | CCA | ACT | AAG | AGA | TCT | TTT | ATT | GAG | GAC | TTG | CTC | TTT | AAT | AAG | GTG | ACA | CTC | GCT | GAT | GCT | GGC | TTT | ATG | AAG | CAA | TAT | GGC | GAA | TGC | CTA | GGT | GAT | ATT | AAT | GCT | AGA | GAT | CTC | ATT | TGT | GCG | CAG | AAG | TTC | AAT | GGA | CTT | ACA | GTG | TTG | CCA | CCT | TTG | CTC | ACT | GAT | GAT | ATG | ATT | GCT | GCC | TAC | ACT | GCT | GCT | CTA | GTC | AGT | GGT | ACT | GCC | ACT | GCT | GGA | TGG | ACA | TTT | GGT | GCT | GGC | GCT | GCT | CTT | CAA | ATA | CCT | TTT | GCT | ATG | CAA | ATG | GCA | TAT | AGG | TTC | AAT | GGC | ATT | GGA | GTT | ACC | CAA | AAT | GTT | CTC | TAT | GAG | AAC | CAA | AAA | CAA | ATC | GCC | AAC | CAA | TTT | AAC | AAG | GCG | ATC | AGT | CAA | ATT | CAA | GAA | TCA | CTT | ACA | ACA | ACA | TCA | ACT | GCA | TTG | GGC | AAG | CTG | CAA | GAC | GTT | GTT | AAC | CAG | AAT | GCT | CAA | GCA | TTA | AAC | ACA | CTT | GTC | AAA | CAA | CTT | AGC | TCC | AAT | TTT | GGT | GCA | ATT | TCA | AGT | GTG | CTA | AAT | GAT | ATC | CTC | TCG | CGA | CTT | GAC | AAA | GTC | GAG | GCT | GAG | GTA | CAA | ATT | GAT | AGG | TTA | ATT | ACA | GGC | AGA | CTG | CAA | AGC | CTG | CAA | ACC | TAT | GTA | ACA | CAA | CAA | CTA | ATC | AGG | GCT | GCT | GAA | ATC | AGG | GCT | TCT | GCT | AAT | CTT | GCT | GCT | ACT | AAA | ATG | TCT | GAG | TGT | GTT | CTT | GGA | CAA | TCA | AAA | AGA | GTT | GAC | TTT | TGC | GGA | AAA | GGC | TAT | CAT | CTT | ATG | TCC | TTC | CCG | CAA | GCA | GCC | CCG | CAT | GGT | GTT | GTC | TTC | CTA | CAT | GTC | ACA | TAT | GTG | CCA | TCC | CAA | GAG | AGA | AAC | TTC | ACC | ACT | GCG | CCA | GCA | ATT | TGT | CAC | GAA | GGC | AAA | GCA | TAC | TTC | CCG | CGT | GAA | GGT | GTT | TTT | GTT | TTT | AAT | GGC | ACT | TCT | TGG | TTT | ATT | ACA | CAG | AGG | AAC | TTC | TTT | TCT | CCA | CAA | ATA | ATT | ACT | ACA | GAC | AAT | ACA | TTT | GTC | TCC | GGA | AGT | TGT | GAT | GTC | GTA | ATC | GGC | ATC | ATT | AAC | AAC | ACA | GTT | TAT | GAT | CCT | CTG | CAA | CCT | GAG | CTT | GAC | TCA | TTC | AAA | GAA | GAG | CTG | GAC | AAG | TAC | TTC | AAA | AAT | CAC | ACA | TCA | CCA | GAT | GTT | GAT | CTC | GGC | GAC | ATT | TCA | GGC | ATT | AAC | GCT | TCT | GTC | GTC | AAT | ATT | CAG | AAA | GAA | ATT | GAC | CGC | CTC | AAT | GAG | GTC | GCC | AAA | AAT | TTA | AAT | GAA | TCA | CTC | ATT | GAC | CTT | CAA | GAA | TTG | GGA | AAA | TAT | GAG | CAA | TAC | ATT | AAA | TGG | CCT | TGG | TAT | GTT | TGG | CTC | GGC | TTC | ATT | GCT | GGA | CTA | ATT | GCC | ATC | GTC | ATG | GTT | ACA | ATC | TTG | CTT | TGT | TGC | ATG | ACT | AGT | TGT | TGC | AGT | TGC | CTC | AAG | GGT | GCA | TGC | TCT | TGT | GGT | TCT | TGC | TGC | AAG | TTT | GAT | GAG | GAT | GAC | TCT | GAG | CCA | GTT | CTC | AAG | GGT | GTC | AAA | TTA | CAT | TAC | ACA | TAA |
KY417151_Bat_SARS_like_CoV_Rs7327 | TTT | TTG | CTA | CTT | TAG | TCT | CCT | CTT | ACA | CTA | TAG | AGA | A---GT | GCC | TTG | ATT | TTG | ATG | ACC | GCA | C-- | CCC | ACC | TGC | AAA | TAC | --T | CAA | TTT | TTA | TCT | TCT | CAC | AGA | GGT | GTT | TAT | TAC | CCA | GAT | GAC | ATT | TTT | AGG | TCT | AAT | GTC | TTG | CAT | TTA | GTA | CAA | GAT | CAC | TTC | CTA | CCT | TTT | GAC | TCC | AAC | GTC | ACC | AGG | TTT | ATA | ACG | TTT | GGC | C-- | -TA | AAT | TTT | GAT | AAT | --- | --- | --- | --- | --- | --- | CCC | ATA | ATA | CCC | TTC | AGG | GAT | GGT | ATT | TAT | TTT | GCT | GCG | ACT | GAA | AAG | TCT | AAT | GTT | ATT | AGA | GGA | TGG | GTT | TTT | GGT | TCT | ACA | ATG | AAC | AAC | AAA | TCT | CAA | TCC | GTT | ATA | ATC | ATG | AAC | AAC | TCA | ACT | AAT | TTA | GTC | ATT | AGG | GCT | TGT | AAT | TTT | GAG | TTG | TGT | GAC | AAT | CCA | TTT | TTT | GTT | GTG | TTG | AAA | TCT | --- | --- | --- | --- | AAC | AAC | ACT | CAA | ATA | CCA | TCT | TAC | ATA | TTT | AAT | AAT | GCA | TTC | AAT | TGC | ACA | TTT | GAA | TAT | GTT | TCT | AAG | GAT | TTT | AAC | CTA | GAC | CTT | GGT | G---AA | AAA | CCA | GGT | AAT | TTC | AAG | GAT | CTC | AGA | GAG | TTT | GTT | TTC | AGG | AAT | AAA | GAT | GGT | TTT | TTG | CAT | GTT | TAT | TCC | GGT | TAC | CAA | CCC | ATT | TCT | GCT | GCC | AGT | GG------------T | TTG | CCA | ACT | GGT | TTT | AAT | GCA | CTT | AAA | CCT | ATT | TTT | AAG | TTA | CCT | CTG | GGT | ATT | AAT | ATT | ACT | AAT | TTC | AGA | ACA | CTT | CTG | ACT | GCT | TTT | CCG | CCT | AGA | CCT | GA- | --- | --- | --- | --- | --- | --T | TAT | TGG | GGT | ACT | TCA | GCT | GCA | GCT | TAT | TTT | GTA | GGA | TAT | TTA | AAG | CCA | ACT | ACA | TTC | ATG | CTT | AAG | TAT | GAT | GAA | AAT | GGT | ACA | ATC | ACA | GAT | GCT | GTC | GAT | TGT | TCT | CAA | AAT | CCA | CTT | GCT | GAA | CTC | AAA | TGC | TCT | GTT | AAA | AGT | TTT | GAG | ATT | GAC | AAA | GGA | ATT | TAC | CAA | ACC | TCC | AAT | TTT | AGG | GTA | GCA | CCC | TCA | AAG | GAA | GTT | GTG | AGG | TTC | CCT | AAT | ATT | ACA | AAC | CTG | TGT | CCT | TTT | GGA | GAG | GTT | TTT | AAT | GCT | ACT | ACA | TTT | CCT | TCT | GTC | TAT | GCA | TGG | GAG | AGG | AAA | AGA | ATT | TCT | AAT | TGT | GTT | GCT | GAT | TAC | TCT | GTA | CTC | TAC | AAC | TCA--- | ACA | TCT | TTT | TCA | ACT | TTT | AAG | TGT | TAT | GGC | GTT | TCT | GCC | ACT | AAG | CTG | AAT | GAT | CTT | TGC | TTC | TCT | AAT | GTC | TAT | GCA | GAT | TCA | TTC | GTA | GTC | AAA | GGA | GAT | GAT | GTA | AGG | CAA | ATA | GCA | CCA | GGA | CAG | ACC | GGT | GTT | ATT | GCT | GAT | TAT | AAT | TAT | AAA | TTG | CCA | GAT | GAT | TTT | ATG | GGT | TGT | GTC | CTT | GCT | TGG | AAT | ACT | AGG | AAC | ATT | GAT | GCT | ACT | TCA | ACT | GGT | AAT | TAT | AAT | TAT | AAA | TAT | AGA | TCT | CTC | AGA | CAT | GGC | AAG | CTT | AGG | CCC | TTT | GAG | AGA | GAC | ATT | TCT | AAT | GTG | CCT | TTC | TCC | CCT | GAC | GGC | AAA | CCA | TGT | ACC | CCA | CCT | GC- | --T | TTC | AAC | TGT | TAC | TGG | CCA | TTA | AAT | GAT | TAT | GGT | TTT | TTC | ACT | ACT | AAT | GGC | ATA | GGC | TAT | CAA | CCC | TAT | AGA | GTT | GTA | GTA | CTT | TCT | TTT | GAA | CTT | TTA | AAT | GCA | CCT | GCT | ACA | GTC | TGT | GGA | CCA | AAA | TTA | TCC | ACT | GAC | CTT | ATT | AAA | AAC | CAG | TGT | GTC | AAT | TTT | AAC | TTT | AAT | GGA | CTC | ACT | GGT | ACT | GGT | GTG | TTA | ACT | TCT | TCT | TCA | AAG | AGA | TTT | CAA | CCA | TTT | CAA | CAA | TTT | GGT | CGT | GAT | GTT | TCG | GAT | TTC | ACT | GAC | TCA | GTT | CGA | GAT | CCT | AAA | ACG | TCT | GAA | ATA | TTA | GAC | ATT | TCA | CCT | TGC | TCT | TTT | GGC | GGT | GTA | AGT | GTA | ATT | ACA | CCT | GGA | ACA | AAT | ACT | TCA | TCA | GAA | GTT | GCT | GTT | CTA | TAT | CAA | GAT | GTT | AAC | TGC | ACT | GAT | GTT | CCT | GTA | GCA | ATC | CAT | GCA | GAC | CAA | CTC | ACA | CCT | GCT | TGG | CGC | ATA | TAC | TCC | ACT | GGA | AAT | AAT | G------TA | TTT | CAA | ACT | CAG | GCA | GGC | TGT | CTT | ATA | GGA | GCT | GAG | CAT | GTC | GAT | ACT | TCT | TAT | GAG | TGC | GAC | ATT | CCT | ATT | GGA | GCT | GGC | ATT | TGT | GCT | AGT | TAC | CAC | ACA | GTT | TCT | TCA | C-- | --- | --- | --- | -TA | CGT | AGT | ACT | AGC | CAA | AAA | TCT | ATT | GTG | GCT | TAT | ACT | ATG | TCT | TTA | GGT | GCT | GAT | AGT | TCA | ATT | GTT | TAC | TCT | AAT | AAC | ACC | ATT | GCT | ATA | CCT | ACT | AAC | TTT | TCA | ATT | AGC | ATT | ACT | ACA | GAA | GTA | ATG | CCT | GTT | TCT | ATG | GCT | AAA | ACC | TCC | GTA | GAT | TGT | AAT | ATG | TAC | ATC | TGC | GGA | GAT | TCT | ACT | GAA | TGT | GCT | AAT | TTG | CTT | CTC | CAA | TAT | GGT | AGC | TTT | TGC | ACA | CAA | CTA | AAT | CGT | GCA | CTC | TCA | GGT | ATT | GCT | GTT | GAA | CAG | GAT | CGC | AAC | ACA | CGT | GAA | GTG | TTC | GCT | CAA | GTC | AAA | CAA | ATG | TAC | AAA | ACC | CCA | ACT | TTG | AAA | GAT | TTT | GGT | GGT | TTT | AAT | TTT | TCA | CAA | ATA | TTA | CCT | GAC | CCT | CTA | AAG | CCA | ACT | AAG | AGG | TCT | TTT | ATT | GAG | GAC | TTG | CTC | TTT | AAT | AAG | GTG | ACA | CTC | GCT | GAT | GCT | GGC | TTT | ATG | AAG | CAA | TAT | GGC | GAA | TGC | CTA | GGT | GAT | ATT | AAT | GCT | AGA | GAT | CTC | ATT | TGT | GCG | CAG | AAG | TTC | AAT | GGA | CTT | ACA | GTG | TTG | CCA | CCT | CTG | CTC | ACT | GAT | GAT | ATG | ATT | GCT | GCC | TAC | ACT | GCT | GCT | CTA | GTT | AGT | GGT | ACT | GCC | ACT | GCT | GGA | TGG | ACA | TTT | GGT | GCT | GGC | GCT | GCT | CTT | CAA | ATA | CCT | TTT | GCT | ATG | CAA | ATG | GCA | TAT | AGG | TTC | AAT | GGC | ATT | GGA | GTT | ACC | CAA | AAT | GTT | CTC | TAT | GAG | AAC | CAA | AAA | CAA | ATC | GCC | AAC | CAA | TTT | AAC | AAG | GCG | ATC | AGT | CAA | ATT | CAA | GAA | TCA | CTT | ACA | ACA | ACA | TCA | ACT | GCA | TTG | GGC | AAG | CTG | CAA | GAC | GTT | GTT | AAC | CAG | AAT | GCT | CAA | GCA | TTA | AAC | ACA | CTT | GTT | AAA | CAA | CTT | AGC | TCT | AAT | TTT | GGT | GCA | ATT | TCA | AGT | GTG | CTA | AAT | GAT | ATC | CTT | TCG | CGA | CTT | GAT | AAA | GTT | GAG | GCG | GAG | GTA | CAA | ATT | GAC | AGG | TTA | ATT | ACA | GGC | AGA | CTT | CAA | AGC | CTT | CAA | ACC | TAT | GTA | ACA | CAA | CAA | CTA | ATC | AGG | GCT | GCT | GAA | ATC | AGG | GCT | TCT | GCT | AAT | CTT | GCT | GCT | ACT | AAA | ATG | TCT | GAG | TGT | GTT | CTT | GGA | CAA | TCA | AAA | AGA | GTT | GAC | TTT | TGC | GGA | AAG | GGA | TAC | CAC | CTT | ATG | TCC | TTC | CCA | CAA | GCA | GCC | CCG | CAT | GGT | GTT | GTC | TTC | CTA | CAT | GTC | ACG | TAT | GTG | CCA | TCC | CAG | GAG | AGG | AAC | TTC | ACC | ACA | GCG | CCA | GCA | ATT | TGT | CAT | GAA | GGC | AAA | GCA | TAC | TTC | CCT | CGT | GAA | GGT | GTT | TTT | GTG | TTT | AAT | GGC | ACT | TCT | TGG | TTT | ATT | ACA | CAG | AGG | AAC | TTC | TTT | TCT | CCA | CAA | ATA | ATT | ACT | ACA | GAC | AAT | ACA | TTT | GTC | TCC | GGA | AAT | TGT | GAT | GTC | GTT | ATT | GGC | ATC | ATT | AAC | AAC | ACA | GTT | TAT | GAC | CCT | CTG | CAA | CCT | GAG | CTT | GAC | TCA | TTC | AAA | GAA | GAG | CTG | GAC | AAG | TAC | TTC | AAA | AAT | CAC | ACA | TCA | CCA | GAT | GTT | GAT | CTT | GGC | GAC | ATT | TCA | GGC | ATT | AAC | GCT | TCT | GTC | GTC | AAC | ATT | CAA | AAA | GAA | ATT | GAC | CGC | CTC | AAT | GAG | GTC | GCT | AAA | AAT | TTA | AAT | GAA | TCA | CTC | ATT | GAC | CTT | CAA | GAA | TTG | GGA | AAA | TAT | GAG | CAA | TAT | ATT | AAA | TGG | CCG | TGG | TAT | GTT | TGG | CTC | GGC | TTC | ATT | GCT | GGA | CTA | ATT | GCC | ATC | GTC | ATG | GTT | ACA | ATC | TTG | CTT | TGT | TGC | ATG | ACT | AGT | TGT | TGC | AGT | TGC | CTC | AAG | GGT | GCA | TGC | TCT | TGT | GGT | TCT | TGC | TGC | AAG | TTT | GAT | GAG | GAT | GAC | TCT | GAG | CCA | GTT | CTC | AAG | GGT | GTT | AAA | TTA | CAT | TAC | ACA | TAA |
KY417152_Bat_SARS_like_CoV_Rs9401 | TTT | TTG | CTA | CTT | TAG | TCT | CCT | CTT | ACA | CTA | TAG | AGA | A---GT | GCC | TTG | ATT | TTG | ATG | ACC | GCA | C-- | CCC | ACC | TGC | AAA | TAC | --T | CAA | TTT | TTA | TCT | TCT | CAC | AGA | GGT | GTT | TAT | TAC | CCA | GAT | GAC | ATT | TTT | AGG | TCT | AAT | GTC | TTG | CAT | TTA | GTA | CAA | GAT | CAC | TTC | CTA | CCT | TTT | GAC | TCC | AAC | GTC | ACC | AGG | TTT | ATA | ACG | TTT | GGC | C-- | -TA | AAT | TTT | GAT | AAT | --- | --- | --- | --- | --- | --- | CCC | ATA | ATA | CCC | TTC | AGG | GAT | GGT | ATT | TAT | TTT | GCT | GCG | ACT | GAA | AAG | TCT | AAT | GTT | ATT | AGA | GGA | TGG | GTT | TTT | GGT | TCT | ACA | ATG | AAC | AAC | AAA | TCT | CAA | TCC | GTT | ATA | ATC | ATG | AAC | AAC | TCA | ACT | AAT | TTA | GTC | ATT | AGG | GCT | TGT | AAT | TTT | GAG | TTG | TGT | GAC | AAT | CCA | TTT | TTT | GTT | GTG | TTG | AAA | TCT | --- | --- | --- | --- | AAC | AAC | ACT | CAA | ATA | CCA | TCT | TAC | ATA | TTT | AAT | AAT | GCA | TTC | AAT | TGC | ACA | TTT | GAA | TAT | GTT | TCT | AAG | GAT | TTT | AAC | CTA | GAC | CTT | GGT | G---AA | AAA | CCA | GGT | AAT | TTC | AAG | GAT | CTC | AGA | GAG | TTT | GTT | TTC | AGG | AAT | AAA | GAT | GGT | TTT | TTG | CAT | GTT | TAT | TCC | GGT | TAC | CAA | CCC | ATT | TCT | GCT | GCC | AGT | GG------------T | TTG | CCA | ACT | GGT | TTT | AAT | GCA | CTT | AAA | CCT | ATT | TTT | AAG | TTA | CCT | CTG | GGT | ATT | AAT | ATT | ACT | AAT | TTC | AGA | ACA | CTT | CTG | ACT | GCT | TTT | CCG | CCT | AGA | CCT | GA- | --- | --- | --- | --- | --- | --T | TAT | TGG | GGT | ACT | TCA | GCT | GCA | GCT | TAT | TTT | GTA | GGA | TAT | TTA | AAG | CCA | ACT | ACA | TTC | ATG | CTT | AAG | TAT | GAT | GAA | AAT | GGT | ACA | ATC | ACA | GAT | GCT | GTC | GAT | TGT | TCT | CAA | AAT | CCA | CTT | GCT | GAA | CTC | AAA | TGC | TCT | GTT | AAA | AGT | TTT | GAG | ATT | GAC | AAA | GGA | ATT | TAC | CAA | ACC | TCC | AAT | TTT | AGG | GTA | GCA | CCC | TCA | AAG | GAA | GTT | GTG | AGG | TTC | CCT | AAT | ATT | ACA | AAC | CTG | TGT | CCT | TTT | GGA | GAG | GTT | TTT | AAT | GCT | ACT | ACA | TTT | CCT | TCT | GTC | TAT | GCA | TGG | GAG | AGG | AAA | AGA | ATT | TCT | AAT | TGT | GTT | GCT | GAT | TAC | TCT | GTA | CTC | TAC | AAC | TCA--- | ACA | TCT | TTT | TCA | ACT | TTT | AAG | TGT | TAT | GGC | GTT | TCT | GCC | ACT | AAG | CTG | AAT | GAT | CTT | TGC | TTC | TCT | AAT | GTC | TAT | GCA | GAT | TCA | TTC | GTA | GTC | AAA | GGA | GAT | GAT | GTA | AGG | CAA | ATA | GCA | CCA | GGA | CAG | ACC | GGT | GTT | ATT | GCT | GAT | TAT | AAT | TAT | AAA | TTG | CCA | GAT | GAT | TTT | ATG | GGT | TGT | GTC | CTT | GCT | TGG | AAT | ACT | AGG | AAC | ATT | GAT | GCT | ACT | TCA | ACT | GGT | AAT | TAT | AAT | TAT | AAA | TAT | AGA | TCT | CTC | AGA | CAT | GGC | AAG | CTT | AGG | CCC | TTT | GAG | AGA | GAC | ATT | TCT | AAT | GTG | CCT | TTC | TCC | CCT | GAC | GGC | AAA | CCA | TGT | ACC | CCA | CCT | GC- | --T | TTC | AAC | TGT | TAC | TGG | CCA | TTA | AAT | GAT | TAT | GGT | TTT | TTC | ACT | ACT | AAT | GGC | ATA | GGC | TAT | CAA | CCC | TAT | AGA | GTT | GTA | GTA | CTT | TCT | TTT | GAA | CTT | TTA | AAT | GCA | CCT | GCT | ACA | GTC | TGT | GGA | CCA | AAA | TTA | TCC | ACT | GAC | CTT | ATT | AAA | AAC | CAG | TGT | GTC | AAT | TTT | AAC | TTT | AAT | GGA | CTC | ACT | GGT | ACT | GGT | GTG | TTA | ACT | TCT | TCT | TCA | AAG | AGA | TTT | CAA | CCA | TTT | CAA | CAA | TTT | GGT | CGT | GAT | GTT | TCG | GAT | TTC | ACT | GAC | TCA | GTT | CGA | GAT | CCT | AAA | ACG | TCT | GAA | ATA | TTA | GAC | ATT | TCA | CCT | TGC | TCT | TTT | GGC | GGT | GTA | AGT | GTA | ATT | ACA | CCT | GGA | ACA | AAT | ACT | TCA | TCA | GAA | GTT | GCT | GTT | CTA | TAT | CAA | GAT | GTT | AAC | TGC | ACT | GAT | GTT | CCT | GTA | GCA | ATC | CAT | GCA | GAC | CAA | CTC | ACA | CCT | GCT | TGG | CGC | ATA | TAC | TCC | ACT | GGA | AAT | AAT | G------TA | TTT | CAA | ACT | CAG | GCA | GGC | TGT | CTT | ATA | GGA | GCT | GAG | CAT | GTC | GAT | ACT | TCT | TAT | GAG | TGC | GAC | ATT | CCT | ATT | GGA | GCT | GGC | ATT | TGT | GCT | AGT | TAC | CAC | ACA | GTT | TCT | TCA | C-- | --- | --- | --- | -TA | CGT | AGT | ACT | AGC | CAA | AAA | TCT | ATT | GTG | GCT | TAT | ACT | ATG | TCT | TTA | GGT | GCT | GAT | AGT | TCA | ATT | GTT | TAC | TCT | AAT | AAC | ACC | ATT | GCT | ATA | CCT | ACT | AAC | TTT | TCA | ATT | AGC | ATT | ACT | ACA | GAA | GTA | ATG | CCT | GTT | TCT | ATG | GCT | AAA | ACC | TCC | GTA | GAT | TGT | AAT | ATG | TAC | ATC | TGC | GGA | GAT | TCT | ACT | GAA | TGT | GCT | AAT | TTG | CTT | CTC | CAA | TAT | GGT | AGC | TTT | TGC | ACA | CAA | CTA | AAT | CGT | GCA | CTC | TCA | GGT | ATT | GCT | GTT | GAA | CAG | GAT | CGC | AAC | ACA | CGT | GAA | GTG | TTC | GCT | CAA | GTC | AAA | CAA | ATG | TAC | AAA | ACC | CCA | ACT | TTG | AAA | GAT | TTT | GGT | GGT | TTT | AAT | TTT | TCA | CAA | ATA | TTA | CCT | GAC | CCT | CTA | AAG | CCA | ACT | AAG | AGG | TCT | TTT | ATT | GAG | GAC | TTG | CTC | TTT | AAT | AAG | GTG | ACA | CTC | GCT | GAT | GCT | GGC | TTT | ATG | AAG | CAA | TAT | GGC | GAA | TGC | CTA | GGT | GAT | ATT | AAT | GCT | AGA | GAT | CTC | ATT | TGT | GCG | CAG | AAG | TTC | AAT | GGA | CTT | ACA | GTG | TTG | CCA | CCT | CTG | CTC | ACT | GAT | GAT | ATG | ATT | GCT | GCC | TAC | ACT | GCT | GCT | CTA | GTT | AGT | GGT | ACT | GCC | ACT | GCT | GGA | TGG | ACA | TTT | GGT | GCT | GGC | GCT | GCT | CTT | CAA | ATA | CCT | TTT | GCT | ATG | CAA | ATG | GCA | TAT | AGG | TTC | AAT | GGC | ATT | GGA | GTT | ACC | CAA | AAT | GTT | CTC | TAT | GAG | AAC | CAA | AAA | CAA | ATC | GCC | AAC | CAA | TTT | AAC | AAG | GCG | ATC | AGT | CAA | ATT | CAA | GAA | TCA | CTT | ACA | ACA | ACA | TCA | ACT | GCA | TTG | GGC | AAG | CTG | CAA | GAC | GTT | GTT | AAC | CAG | AAT | GCT | CAA | GCA | TTA | AAC | ACA | CTT | GTT | AAA | CAA | CTT | AGC | TCT | AAT | TTT | GGT | GCA | ATT | TCA | AGT | GTG | CTA | AAT | GAT | ATC | CTT | TCG | CGA | CTT | GAT | AAA | GTT | GAG | GCG | GAG | GTA | CAA | ATT | GAC | AGG | TTA | ATT | ACA | GGC | AGA | CTT | CAA | AGC | CTT | CAA | ACC | TAT | GTA | ACA | CAA | CAA | CTA | ATC | AGG | GCT | GCT | GAA | ATC | AGG | GCT | TCT | GCT | AAT | CTT | GCT | GCT | ACT | AAA | ATG | TCT | GAG | TGT | GTT | CTT | GGA | CAA | TCA | AAA | AGA | GTT | GAC | TTT | TGC | GGA | AAG | GGA | TAC | CAC | CTT | ATG | TCC | TTC | CCA | CAA | GCA | GCC | CCG | CAT | GGT | GTT | GTC | TTC | CTA | CAT | GTC | ACG | TAT | GTG | CCA | TCC | CAG | GAG | AGG | AAC | TTC | ACC | ACA | GCG | CCA | GCA | ATT | TGT | CAT | GAA | GGC | AAA | GCA | TAC | TTC | CCT | CGT | GAA | GGT | GTT | TTT | GTG | TTT | AAT | GGC | ACT | TCT | TGG | TTT | ATT | ACA | CAG | AGG | AAC | TTC | TTT | TCT | CCA | CAA | ATA | ATT | ACT | ACA | GAC | AAT | ACA | TTT | GTC | TCC | GGA | AAT | TGT | GAT | GTC | GTT | ATT | GGC | ATC | ATT | AAC | AAC | ACA | GTT | TAT | GAC | CCT | CTG | CAA | CCT | GAG | CTT | GAC | TCA | TTC | AAA | GAA | GAG | CTG | GAC | AAG | TAC | TTC | AAA | AAT | CAC | ACA | TCA | CCA | GAT | GTT | GAT | CTT | GGC | GAC | ATT | TCA | GGC | ATT | AAC | GCT | TCT | GTC | GTC | AAC | ATT | CAA | AAA | GAA | ATT | GAC | CGC | CTC | AAT | GAG | GTC | GCT | AAA | AAT | TTA | AAT | GAA | TCA | CTC | ATT | GAC | CTT | CAA | GAA | TTG | GGA | AAA | TAT | GAG | CAA | TAT | ATT | AAA | TGG | CCG | TGG | TAT | GTT | TGG | CTC | GGC | TTC | ATT | GCT | GGA | CTA | ATT | GCC | ATC | GTC | ATG | GTT | ACA | ATC | TTG | CTT | TGT | TGC | ATG | ACT | AGT | TGT | TGC | AGT | TGC | CTC | AAG | GGT | GCA | TGC | TCT | TGT | GGT | TCT | TGC | TGC | AAG | TTT | GAT | GAG | GAT | GAC | CCT | GAG | CCA | GTT | CTC | AAG | GGT | GTT | AAA | TTA | CAT | TAC | ACA | TAA |
KY417144_Bat_SARS_like_CoV_Rs4084 | TTT | TTG | CTA | CTC | TAG | TCT | CCT | CTT | ACA | CTA | TAG | AGA | A---GT | GCC | TTG | ATT | TTG | ATG | ACC | GCA | C-- | TCC | ACC | TGC | AAA | TAC | --T | CAA | TTT | TTA | TCT | TCT | CAC | AGA | GGT | GTT | TAT | TAC | CCA | GAT | GAC | ATT | TTT | AGG | TCT | AAT | GTC | TTG | CAT | TTA | GTA | CAA | GAT | CAT | TTC | CTA | CCT | TTT | GAC | TCT | AAC | GTC | ACC | AGG | TTT | ATA | ACG | TTT | GGC | C-- | -TA | AAT | TTT | GAT | AAT | --- | --- | --- | --- | --- | --- | CCC | ATA | ATA | CCC | TTT | AGG | GAT | GGT | ATT | TAT | TTT | GCT | GCG | ACT | GAA | AAG | TCT | AAT | GTT | ATT | AGA | GGA | TGG | GTT | TTT | GGT | TCT | ACA | ATG | AAC | AAC | AAA | TCT | CAA | TCC | GTT | ATA | ATA | ATG | AAC | AAC | TCA | ACT | AAT | TTA | GTC | ATT | AGG | GCT | TGT | AAT | TTT | GAG | TTG | TGT | GAC | AAT | CCA | TTT | TTT | GTT | GTG | TTG | AAA | TCT | --- | --- | --- | --- | AAC | AAC | ACT | CAA | ATA | CCA | TCT | TAC | ATA | TTT | AAT | AAT | GCA | TTC | AAT | TGC | ACA | TTT | GAA | TAT | GTT | TCT | AAG | GAT | TTT | AAC | CTA | GAC | CTT | GGT | G---AA | AAA | CCA | GGT | AAT | TTC | AAG | GAT | CTC | AGA | GAG | TTT | GTT | TTC | AGG | AAT | AAA | GAT | GGT | TTT | TTG | CAT | GTT | TAT | TCC | GGT | TAC | CAA | CCC | ATT | TCT | GCC | GCC | AGT | GG------------T | TTG | CCA | ACT | GGT | TTT | AAT | GCA | CTC | AAA | CCT | ATT | TTC | AAG | TTA | CCT | CTG | GGT | ATT | AAT | ATT | ACT | AAT | TTC | AGA | ACA | CTT | CTG | ACT | GCT | TTT | CCG | CCT | AGA | CCT | GA- | --- | --- | --- | --- | --- | --T | TAT | TGG | GGT | ACT | TCA | GCT | GCA | GCT | TAT | TTT | GTA | GGA | TAT | TTA | AAA | CCA | ACT | ACA | TTC | ATG | CTC | AAG | TAT | GAT | GAA | AAT | GGT | ACA | ATC | ACA | GAT | GCT | GTC | GAT | TGT | TCT | CAA | AAT | CCA | CTT | GCT | GAA | CTC | AAA | TGC | TCT | GTT | AAA | AGT | TTT | GAG | ATT | GAC | AAA | GGA | ATT | TAT | CAA | ACC | TCC | AAT | TTT | AGG | GTA | GCA | CCC | TCA | AAG | GAA | GTT | GTG | AGG | TTC | CCT | AAT | ATT | ACA | AAC | CTG | TGT | CCT | TTT | GGG | GAG | GTT | TTT | AAT | GCT | ACT | ACA | TTT | CCT | TCT | GTC | TAT | GCA | TGG | GAG | AGG | AAA | AGA | ATT | TCT | AAT | TGT | GTT | GCT | GAT | TAC | TCT | ATA | CTC | TAC | AAC | TCA--- | ACA | TCT | TTT | TCA | ACT | TTT | AAG | TGT | TAT | GGC | GTT | TCT | GCC | ACT | AAG | CTG | AAT | GAC | CTT | TGC | TTC | TCC | AAC | GTC | TAT | GCA | GAT | TCA | TTC | GTA | GTC | AAA | GGA | GAT | GAT | GTA | AGG | CAA | ATA | GCA | CCA | GGA | CAG | ACC | GGT | GTT | ATT | GCT | GAT | TAT | AAT | TAC | AAA | TTA | CCA | GAT | GAC | TTC | TTG | GGT | TGT | GTC | CTA | GCA | TGG | AAC | ACC | AAT | TCT | AAA | GAT | TCT | TCC | ACT | TCC | GGT | AAT | TAT | AAT | TAT | TTA | TAT | AGA | TGG | GTT | AGA | AGG | TCT | AAG | CTT | AAC | CCT | TAT | GAG | CGC | GAC | TTA | TCT | AAC | GAC | ATC | TAT | TCA | CCT | GGA | GGT | CAG | TCT | TGC | TCA | GCT | GTA | GG- | --T | CCT | AAT | TGT | TAT | AAC | CCC | TTA | CGT | CCA | TAT | GGC | TTT | TTT | ACA | ACA | GCT | GGT | GTT | GGA | CAC | CAA | CCT | TAT | AGA | GTT | GTA | GTA | CTT | TCT | TTT | GAA | CTT | TTA | AAT | GCA | CCC | GCT | ACA | GTC | TGT | GGA | CCA | AAA | TTA | TCC | ACC | GAC | CTT | ATT | AAA | AAT | CAA | TGT | GTC | AAT | TTT | AAC | TTT | AAT | GGA | CTC | ACT | GGT | ACT | GGT | GTG | TTA | ACT | CCT | TCT | TCA | AAG | AGA | TTT | CAA | CCA | TTT | CAA | CAA | TTT | GGT | CGT | GAT | GTT | TCG | GAT | TTC | ACT | GAT | TCA | GTT | CGA | GAT | CCG | AAG | ACG | TCT | GAA | ATA | TTA | GAC | ATT | TCA | CCT | TGC | TCT | TTT | GGC | GGT | GTA | AGT | GTA | ATC | ACA | CCT | GGA | ACA | AAT | ACT | TCA | TCA | GAA | GTT | GCT | GTT | CTA | TAT | CAA | GAT | GTT | AAC | TGC | ACT | GAT | GTT | CCT | GTA | GCA | ATC | CAT | GCA | GAC | CAA | CTC | ACA | CCT | TCT | TGG | CGC | GTA | TAC | TCT | ACT | GGA | AAT | AAT | G------TA | TTT | CAA | ACC | CAG | GCA | GGC | TGT | CTT | ATA | GGA | GCT | GAG | CAT | GTC | GAC | ACT | TCT | TAT | GAG | TGC | GAC | ATT | CCT | ATT | GGA | GCT | GGC | ATT | TGT | GCT | AGT | TAC | CAT | ACA | GTT | TCT | TCA | T-- | --- | --- | --- | -TA | CGT | AGT | ACT | AGC | CAA | AAA | TCT | ATT | GTG | GCT | TAT | ACT | ATG | TCT | TTA | GGT | GCT | GAT | AGT | TCA | ATT | GCT | TAC | TCT | AAT | AAC | ACC | ATT | GCT | ATA | CCT | ACT | AAC | TTT | TCA | ATT | AGC | ATT | ACT | ACA | GAA | GTA | ATG | CCT | GTT | TCT | ATG | GCT | AAA | ACC | TCT | GTA | GAT | TGT | AAT | ATG | TAC | ATC | TGC | GGA | GAT | TCT | ACT | GAA | TGT | GCT | AAT | TTG | CTT | CTC | CAA | TAT | GGT | AGC | TTT | TGC | ACA | CAA | CTA | AAT | CGT | GCA | CTC | TCA | GGT | ATT | GCT | GTT | GAA | CAG | GAT | CGC | AAC | ACA | CGT | GAA | GTA | TTC | GCT | CAA | GTC | AAA | CAA | ATG | TAC | AAA | ACC | CCA | ACT | TTG | AAA | GAT | TTT | GGT | GGT | TTT | AAT | TTT | TCA | CAA | ATA | TTA | CCT | GAC | CCT | CTA | AAG | CCA | ACT | AAG | AGG | TCT | TTT | ATT | GAG | GAC | TTG | CTC | TTT | AAT | AAG | GTG | ACA | CTC | GCT | GAT | GCT | GGC | TTT | ATG | AAG | CAA | TAT | GGC | GAA | TGC | CTA | GGT | GAT | ATT | AAT | GCT | AGA | GAT | CTC | ATT | TGT | GCG | CAG | AAG | TTC | AAT | GGA | CTT | ACA | GTG | CTG | CCA | CCT | CTG | CTC | ACT | GAT | GAT | ATG | ATT | GCT | GCC | TAC | ACT | GCT | GCT | CTA | GTT | AGT | GGT | ACT | GCC | ACT | GCT | GGA | TGG | ACA | TTC | GGT | GCT | GGC | GCT | GCT | CTT | CAA | ATA | CCT | TTT | GCT | ATG | CAA | ATG | GCA | TAT | AGG | TTC | AAT | GGC | ATT | GGA | GTT | ACT | CAA | AAT | GTT | CTC | TAT | GAG | AAC | CAA | AAA | CAA | ATC | GCC | AAT | CAA | TTT | AAC | AAG | GCG | ATC | AGC | CAA | ATT | CAA | GAA | TCA | CTC | ACA | ACA | ACA | TCC | ACT | GCA | TTG | GGC | AAG | CTG | CAA | GAT | GTC | GTC | AAC | CAG | AAT | GCT | CAA | GCA | TTA | AAC | ACA | CTT | GTT | AAA | CAA | CTT | AGC | TCC | AAT | TTT | GGT | GCG | ATT | TCA | AGT | GTG | TTA | AAT | GAT | ATC | CTT | TCG | CGA | CTT | GAT | AAA | GTC | GAG | GCA | GAG | GTA | CAA | ATT | GAC | AGG | TTA | ATT | ACA | GGC | AGA | CTG | CAA | AGC | CTT | CAA | ACC | TAT | GTA | ACA | CAA | CAA | CTA | ATC | AGG | GCT | GCT | GAA | ATC | AGG | GCT | TCT | GCT | AAT | CTT | GCT | GCT | ACT | AAA | ATG | TCT | GAG | TGT | GTT | CTT | GGA | CAA | TCA | AAA | AGA | GTT | GAC | TTT | TGT | GGA | AAG | GGC | TAC | CAT | CTT | ATG | TCC | TTC | CCA | CAA | GCA | GCC | CCG | CAT | GGT | GTT | GTC | TTC | CTA | CAT | GTC | ACA | TAT | GTG | CCA | TCT | CAA | GAG | AGA | AAC | TTC | ACC | ACA | GCG | CCA | GCA | ATT | TGT | CAT | GAA | GGC | AAA | GCA | TAC | TTC | CCT | CGT | GAA | GGT | GTT | TTT | GTG | TTT | AAT | GGC | ACT | TCG | TGG | TTT | ATT | ACA | CAG | AGG | AAC | TTC | TTT | TCT | CCA | CAA | ATA | ATT | ACT | ACA | GAC | AAT | ACA | TTT | GTC | TCC | GGA | AGT | TGT | GAT | GTC | GTA | ATT | GGC | ATC | ATT | AAC | AAC | ACA | GTT | TAT | GAT | CCT | CTG | CAA | CCT | GAG | CTT | GAC | TCA | TTC | AAA | GAA | GAG | CTG | GAC | AAG | TAC | TTC | AAA | AAT | CAC | ACA | TCA | CCA | GAT | GTT | GAT | CTT | GGC | GAC | ATT | TCA | GGC | ATT | AAC | GCT | TCT | GTC | GTC | AAC | ATT | CAA | AAA | GAA | ATT | GAC | CGC | CTC | AAT | GAG | GTC | GCT | AAA | AAT | TTA | AAT | GAA | TCA | CTC | ATT | GAC | CTT | CAA | GAA | TTG | GGA | AAA | TAT | GAG | CAA | TAT | ATT | AAA | TGG | CCT | TGG | TAT | GTT | TGG | CTC | GGC | TTC | ATT | GCT | GGA | CTA | ATT | GCC | ATC | GTC | ATG | GTT | ACA | ATC | TTG | CTT | TGT | TGC | ATG | ACT | AGT | TGT | TGC | AGT | TGC | CTC | AAG | GGT | GCA | TGC | TCT | TGT | GGT | TCT | TGC | TGC | AAG | TTT | GAT | GAG | GAT | GAC | TCT | GAG | CCA | GTT | CTC | AAG | GGT | GTC | AAA | TTA | CAT | TAC | ACA | TAA |
KF367457_Bat_SARS_like_CoV_WIV1 | TTT | TTG | CTA | CTC | TAG | TCT | CCT | CTT | ACA | CTA | TAG | AGA | A---GT | GCC | TTG | ATT | TTG | ATG | ACC | GCA | C-- | TCC | ACC | TGC | AAA | TAC | --T | CAA | TTT | TTA | TCT | TCT | CAC | AGA | GGT | GTT | TAT | TAC | CCA | GAT | GAC | ATT | TTT | AGG | TCT | AAT | GTC | TTG | CAT | TTA | GTA | CAA | GAT | CAT | TTC | CTA | CCT | TTT | GAC | TCT | AAC | GTC | ACC | AGG | TTT | ATA | ACG | TTT | GGC | C-- | -TA | AAT | TTT | GAT | AAT | --- | --- | --- | --- | --- | --- | CCC | ATA | ATA | CCC | TTC | AAG | GAT | GGT | ATT | TAT | TTT | GCT | GCG | ACT | GAA | AAG | TCT | AAT | GTT | ATT | AGA | GGA | TGG | GTT | TTT | GGT | TCT | ACA | ATG | AAC | AAC | AAA | TCT | CAA | TCC | GTT | ATA | ATA | ATG | AAC | AAC | TCA | ACT | AAT | TTA | GTC | ATT | AGG | GCT | TGT | AAT | TTT | GAG | TTG | TGT | GAC | AAT | CCA | TTT | TTT | GTT | GTG | TTG | AAA | TCT | --- | --- | --- | --- | AAC | AAC | ACT | CAA | ATA | CCA | TCT | TAC | ATA | TTT | AAT | AAT | GCA | TTC | AAT | TGC | ACA | TTT | GAA | TAT | GTT | TCT | AAG | GAT | TTT | AAC | CTA | GAC | CTT | GGT | G---AA | AAA | CCA | GGT | AAT | TTC | AAG | GAT | CTC | AGA | GAG | TTT | GTT | TTC | AGG | AAT | AAA | GAT | GGT | TTT | TTG | CAT | GTT | TAT | TCC | GGT | TAC | CAA | CCC | ATT | TCT | GCT | GCC | AGT | GG------------T | TTG | CCA | ACT | GGT | TTT | AAT | GCA | CTC | AAA | CCT | ATT | TTC | AAG | TTA | CCT | CTG | GGT | ATT | AAT | ATT | ACT | AAT | TTC | AGA | ACA | CTT | CTG | ACT | GCT | TTT | CCG | CCT | AGA | CCT | GA- | --- | --- | --- | --- | --- | --T | TAT | TGG | GGT | ACT | TCA | GCT | GCA | GCT | TAT | TTT | GTA | GGA | TAT | TTA | AAA | CCA | ACT | ACA | TTC | ATG | CTC | AAG | TAT | GAT | GAA | AAT | GGT | ACA | ATC | ACA | GAT | GCT | GTC | GAT | TGT | TCT | CAA | AAT | CCA | CTT | GCT | GAA | CTC | AAA | TGC | TCT | GTT | AAA | AGT | TTT | GAG | ATT | GAC | AAA | GGA | ATT | TAT | CAA | ACC | TCC | AAT | TTC | AGG | GTG | GCA | CCC | TCG | AAG | GAA | GTT | GTG | AGG | TTC | CCT | AAT | ATT | ACA | AAC | CTG | TGT | CCT | TTT | GGA | GAG | GTT | TTT | AAT | GCT | ACT | ACA | TTT | CCT | TCT | GTC | TAT | GCA | TGG | GAG | AGG | AAA | AGA | ATT | TCA | AAT | TGT | GTT | GCT | GAT | TAC | TCT | GTA | CTC | TAC | AAC | TCA--- | ACA | TCT | TTT | TCA | ACT | TTT | AAG | TGT | TAC | GGC | GTT | TCT | GCC | ACT | AAG | TTG | AAT | GAT | CTT | TGC | TTC | TCC | AAT | GTC | TAT | GCA | GAT | TCA | TTT | GTA | GTC | AAA | GGA | GAC | GAT | GTA | AGG | CAA | ATA | GCA | CCA | GGA | CAG | ACC | GGT | GTT | ATT | GCT | GAT | TAT | AAT | TAC | AAA | TTG | CCA | GAT | GAT | TTC | ACG | GGT | TGT | GTC | CTT | GCT | TGG | AAT | ACT | AGG | AAC | ATT | GAT | GCT | ACT | CAA | ACT | GGT | AAT | TAT | AAT | TAT | AAA | TAT | AGA | TCT | CTC | AGA | CAT | GGC | AAG | CTT | AGG | CCT | TTT | GAG | AGA | GAT | ATT | TCT | AAT | GTG | CCT | TTC | TCT | CCT | GAT | GGC | AAA | CCT | TGT | ACC | CCA | CCT | GC- | --T | TTT | AAT | TGT | TAT | TGG | CCA | TTA | AAT | GAT | TAT | GGT | TTT | TAC | ATC | ACT | AAT | GGC | ATA | GGC | TAC | CAA | CCT | TAT | AGA | GTT | GTA | GTT | CTT | TCT | TTT | GAA | CTT | CTA | AAT | GCA | CCT | GCT | ACG | GTT | TGT | GGA | CCA | AAA | TTG | TCC | ACT | GAC | CTT | ATT | AAA | AAT | CAA | TGT | GTC | AAT | TTT | AAC | TTT | AAT | GGA | CTC | ACT | GGT | ACT | GGT | GTG | TTA | ACT | CCT | TCT | TCA | AAG | AGA | TTT | CAA | CCA | TTT | CAA | CAA | TTT | GGT | CGT | GAT | GTT | TCG | GAT | TTC | ACT | GAT | TCA | GTT | CGA | GAT | CCG | AAG | ACG | TCT | GAA | ATA | TTA | GAC | ATT | TCA | CCT | TGC | TCT | TTT | GGC | GGT | GTA | AGT | GTA | ATC | ACA | CCT | GGA | ACA | AAT | ACT | TCA | TCA | GAA | GTT | GCT | GTT | CTA | TAT | CAA | GAT | GTT | AAC | TGC | ACT | GAT | GTT | CCT | GTA | GCA | ATC | CAT | GCA | GAC | CAA | CTC | ACA | CCT | TCT | TGG | CGC | GTA | CAC | TCT | ACT | GGA | AAT | AAT | G------TA | TTT | CAA | ACC | CAG | GCA | GGC | TGT | CTT | ATA | GGA | GCT | GAG | CAT | GTC | GAC | ACT | TCT | TAT | GAG | TGC | GAC | ATT | CCT | ATT | GGA | GCT | GGC | ATT | TGT | GCT | AGT | TAC | CAT | ACA | GTT | TCT | TCA | T-- | --- | --- | --- | -TA | CGT | AGT | ACT | AGC | CAA | AAA | TCT | ATT | GTG | GCT | TAT | ACT | ATG | TCT | TTA | GGT | GCT | GAT | AGT | TCA | ATT | GCT | TAC | TCT | AAT | AAC | ACC | ATT | GCT | ATA | CCT | ACT | AAC | TTT | TCA | ATT | AGC | ATT | ACT | ACA | GAA | GTA | ATG | CCT | GTT | TCT | ATG | GCT | AAA | ACC | TCT | GTA | GAT | TGT | AAT | ATG | TAC | ATC | TGC | GGA | GAT | TCT | ACT | GAA | TGT | GCT | AAT | TTG | CTT | CTC | CAA | TAT | GGT | AGC | TTT | TGC | ACA | CAA | CTA | AAT | CGT | GCA | CTC | TCA | GGT | ATT | GCT | GTT | GAA | CAG | GAT | CGC | AAC | ACA | CGT | GAA | GTG | TTC | GCT | CAA | GTC | AAA | CAA | ATG | TAC | AAA | ACC | CCA | ACT | TTG | AAA | GAT | TTT | GGT | GGT | TTT | AAT | TTT | TCA | CAA | ATA | TTA | CCT | GAC | CCT | CTA | AAG | CCA | ACT | AAG | AGG | TCT | TTT | ATT | GAG | GAC | TTG | CTC | TTT | AAT | AAG | GTG | ACA | CTC | GCT | GAT | GCT | GGC | TTT | ATG | AAG | CAA | TAT | GGC | GAA | TGC | CTA | GGT | GAT | ATT | AAT | GCT | AGA | GAT | CTC | ATT | TGT | GCG | CAG | AAG | TTC | AAT | GGA | CTT | ACA | GTG | CTG | CCA | CCT | CTG | CTC | ACT | GAT | GAT | ATG | ATT | GCT | GCC | TAC | ACT | GCT | GCT | CTA | GTT | AGT | GGT | ACT | GCC | ACT | GCT | GGA | TGG | ACA | TTC | GGT | GCT | GGC | GCT | GCT | CTT | CAA | ATA | CCT | TTT | GCT | ATG | CAA | ATG | GCA | TAT | AGG | TTC | AAT | GGC | ATT | GGA | GTT | ACT | CAA | AAT | GTT | CTC | TAT | GAG | AAC | CAA | AAA | CAA | ATC | GCC | AAT | CAA | TTT | AAC | AAG | GCG | ATC | AGC | CAA | ATT | CAA | GAA | TCA | CTC | ACA | ACA | ACA | TCC | ACT | GCA | TTG | GGC | AAG | CTG | CAA | GAT | GTC | GTC | AAC | CAG | AAT | GCT | CAA | GCA | TTA | AAC | ACA | CTT | GTT | AAA | CAA | CTT | AGC | TCC | AAT | TTT | GGT | GCG | ATT | TCA | AGT | GTG | CTA | AAT | GAT | ATC | CTT | TCG | CGA | CTT | GAT | AAA | GTC | GAG | GCA | GAG | GTA | CAA | ATT | GAC | AGG | TTA | ATT | ACA | GGC | AGA | CTG | CAA | AGC | CTT | CAA | ACC | TAT | GTA | ACA | CAA | CAA | CTA | ATC | AGG | GCT | GCT | GAA | ATC | AGG | GCT | TCT | GCT | AAT | CTT | GCT | GCT | ACT | AAA | ATG | TCT | GAG | TGT | GTT | CTT | GGA | CAA | TCA | AAA | AGA | GTT | GAC | TTT | TGC | GGA | AAG | GGC | TAC | CAT | CTT | ATG | TCC | TTC | CCA | CAA | GCA | GCC | CCG | CAT | GGT | GTT | GTC | TTC | CTA | CAT | GTC | ACA | TAT | GTG | CCA | TCT | CAA | GAG | AGA | AAC | TTC | ACC | ACA | GCG | CCA | GCA | ATT | TGT | CAT | GAA | GGC | AAA | GCA | TAC | TTC | CCT | CGT | GAA | GGT | GTT | TTT | GTG | TTT | AAT | GGC | ACT | TCG | TGG | TTT | ATT | ACA | CAG | AGG | AAC | TTC | TTT | TCT | CCA | CAA | ATA | ATT | ACT | ACA | GAC | AAT | ACA | TTT | GTC | TCC | GGA | AGT | TGT | GAT | GTC | GTA | ATT | GGC | ATC | ATT | AAC | AAT | ACA | GTT | TAT | GAT | CCT | CTG | CAA | CCT | GAG | CTT | GAC | TCA | TTC | AAA | GAA | GAG | CTG | GAC | AAG | TAC | TTC | AAA | AAT | CAC | ACA | TCA | CCA | GAT | GTT | GAT | CTT | GGC | GAC | ATT | TCA | GGC | ATT | AAC | GCT | TCT | GTC | GTC | AAC | ATT | CAA | AAA | GAA | ATT | GAC | CGC | CTC | AAT | GAG | GTC | GCT | AAA | AAT | TTA | AAT | GAA | TCA | CTC | ATT | GAC | CTT | CAA | GAA | TTG | GGA | AAA | TAT | GAG | CAA | TAT | ATT | AAA | TGG | CCT | TGG | TAT | GTT | TGG | CTC | GGC | TTC | ATT | GCT | GGA | CTA | ATT | GCC | ATC | GTC | ATG | GTT | ACA | ATC | TTG | CTT | TGT | TGC | ATG | ACT | AGT | TGT | TGC | AGT | TGC | CTC | AAG | GGT | GCA | TGC | TCT | TGT | GGT | TCT | TGC | TGC | AAG | TTT | GAT | GAG | GAT | GAC | TCT | GAG | CCA | GTT | CTC | AAG | GGT | GTC | AAA | TTA | CAT | TAC | ACA | TAA |
KU973692_UNVERIFIED_SARS_related_CoV_F46 | TTA | GTT | ACA | CAG | CTT | TTC | TCA | TTG | GTT | ACA | CAG | CTG | C---AA | CAA | CAT | GTG | TCA | CGG | GGC | CTA | C-- | AAC | AGA | GAA | TAA | GTT | --G | AAC | ATC | TCC | TCA | GGC | AGT | AGG | GGT | GTT | TAT | TAC | CCT | GAT | GAT | ATT | TTT | CGT | TCC | GAT | GTT | AGT | GTG | TTG | GTG | ACA | GGA | CCT | TTT | CTC | CGT | TTT | AAC | ACT | ACT | CTC | ACG | TGG | TAT | AAC | TCA | TGG | AAC | C-- | -AA | GCT | TAT | TCT | TCA | --- | --- | --- | --- | --- | --- | CCT | ATC | TTG | CCC | TTT | GGG | CAT | GGT | GTT | TAC | TTT | TCA | ACC | ATT | GAC | AAA | TCC | AAT | GTT | GTC | AGG | GGT | TGG | ATC | TTT | GGA | ACC | ACG | TTA | GAT | AAT | ACT | ACT | CAA | TCT | GCA | TTG | CTT | GTG | AAT | AAT | GGT | AGT | GCT | ATT | ACA | ATA | CAA | GTC | TGT | TAC | TTC | CAA | TTT | TGT | GAC | AAC | CCT | GCA | TTT | GTA | GTT | ACA | GGC | GGT | --- | --- | --- | --- | GC- | --- | -A- | CAA | ACA | AGC | ACT | GCT | ATT | TAT | ACC | AAC | TTA | CGT | AAC | TGT | ACG | TAT | GTG | GAC | ACA | CTA | CGT | GAC | CTA | CCA | TTA | AGT | CTC | ACA | G---AG | GTT | GAT | GGT | GGT | TTT | AAA | CAC | TTA | CGT | GAG | TTT | GTA | TTC | AAG | ACT | AGT | GAT | GGG | TTT | CTG | CAC | ATT | TAT | GGT | GCT | TAC | CAG | CCT | TAC | GAC | CAT | GCC | ATA | GGTGCTACGGCTGCA | CTA | CCA | ACG | CAG | TTC | TTG | CCT | TTA | AAG | CCC | CTA | TGG | AAA | CTG | CCC | CTT | GGT | CTA | AAT | ATT | ACT | AGT | TAT | AAG | GTT | GTT | ACA | AC- | TTT | AAA | ACC | CAC | AAA | TCA | GG- | --- | --- | --- | --- | --- | --C | CTT | CCA | AG- | --- | --- | --- | -CT | GTT | TAC | ATA | GTG | GGC | AAT | TTA | AAA | CAT | ACA | ACT | ATG | ATG | TTG | TCT | TTT | AAT | GAA | AAT | GGC | ACT | ATG | TCC | AAT | GCT | GTT | GAT | TGT | TCA | CAG | GAC | CCA | TTG | GCT | GAG | CTA | AAG | TGC | ACA | CTC | AAG | CTG | TCT | GAT | GTA | GGT | AAA | GGC | ATT | TAC | CAA | ACG | TCA | AAC | TTC | CGA | GTC | CAA | CCT | ACT | GTT | GAC | GTT | GTG | CGC | TTT | CCC | AAT | ATT | ACT | AAC | TTG | TGT | CCT | TTT | GAT | GCG | GTT | TTT | AAT | GCC | ACC | CGA | TTT | CCC | TCT | GTT | TAT | GCT | TGG | GAG | CGA | GTT | AAG | ATT | TCT | AAT | TGT | GTT | GCA | GAC | TAT | ACG | GCT | TTT | TAC | AAC | TCA--- | ACC | TCT | TTT | TCA | ACT | TTT | AAA | TGC | TAC | GGA | GTT | TCT | CCT | TCT | AAG | TTG | ATT | GAT | CTT | TGC | TTT | ACA | AGT | GTG | TAT | GCT | GAT | ACA | TTC | TTG | ATA | AGG | TTT | TCT | GAG | GTT | CGC | CAA | GTA | GCA | CCA | GGT | GAA | ACT | GGT | GTT | ATA | GCA | GAC | TAC | AAT | TAT | AAG | CTA | CCT | GAT | GAC | TTT | ACT | GGT | TGT | GTT | ATA | GCT | TGG | AAC | ACT | GCC | AAA | CAG | GAC | GTT | GG- | --- | --- | --- | --- | --T | AGT | TAT | TTT | TAT | AGG | TCT | CAC | CGC | TCA | AGT | AAG | CTT | AAA | CCA | TTC | GAG | CGA | GAT | CTT | TCA | TCT | GAT | GA- | --A | AAC | GGT | GTA | CGT | ACA | CTG | AGC | AC- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --G | TAT | GAT | TTT | AAC | CCT | AAC | GTA | CCT | CTT | GAT | TAT | CAA | GCT | ACT | AGG | GTA | GTT | GTG | CTT | TCA | TTT | GAG | CTT | CTA | AAT | GCA | CCT | GCG | ACA | GTT | TGT | GGA | CCA | AAA | CTG | TCC | ACA | CAA | CTT | GTT | AAG | AAC | CAG | TGT | GTC | AAT | TTT | AAT | TTT | AAT | GGA | CTC | AAA | GGT | ACT | GGT | GTT | TTG | ACT | GAC | TCC | TCT | AAG | AGA | TTC | CAG | TCC | TTT | CAA | CAG | TTC | GGT | CGT | GAC | ACG | TCT | GAC | TTT | ACG | GAC | TCA | GTG | CGT | GAC | CCT | CAA | ACC | TTG | GAC | ATA | CTC | GAT | ATC | ACG | CCA | TGT | TCT | TTT | GGT | GGT | GTG | AGT | GTA | ATA | ACA | CCT | GGA | ACA | AAT | GCT | TCA | TCT | GAG | GTG | GCT | GTT | CTT | TAT | CAA | GAT | GTC | AAT | TGC | ACT | GAT | GTG | CCT | ACC | GTC | ATC | CGT | GCT | GAC | CAA | CTC | ACA | CCT | GCT | TGG | CGT | GTT | TAC | TCG | ACC | GGA | GTA | AAT | G------TG | TTT | CAA | ACA | CAA | GCT | GGC | TGT | CTT | ATT | GGA | GCT | GAA | CAT | GTT | AAC | GCG | TCG | TAT | GAG | TGT | GAC | ATT | CCT | ATT | GGT | GCT | GGC | ATT | TGT | GCT | AGC | TAC | CAT | ACA | GCT | TCT | ACT | C-- | --- | --- | --- | -TA | CGT | GGT | GTA | GGT | CAG | AAA | TCC | ATT | GTG | GCT | TAC | ACT | ATG | TCT | TTG | GGT | GCA | GAA | AAT | TCT | ATT | GCT | TAT | GCT | AAT | AAT | TCA | ATT | GCC | ATA | CCT | ACA | AAT | TTT | TCA | ATC | AGT | GTC | ACA | ACT | GAA | GTG | ATG | CCT | GTT | TCA | ATG | GCT | AAG | ACA | TCA | GTA | GAT | TGT | ACA | ATG | TAC | ATC | TGT | GGT | GAT | TCT | CAG | GAG | TGC | AGT | AAC | TTA | CTT | CTC | CAG | TAT | GGA | AGC | TTC | TGC | ACG | CAA | TTA | AAT | CGT | GCT | CTC | ACG | GGC | ATA | GCG | ATA | GAA | CAG | GAC | AAA | AAC | ACA | CAA | GAG | GTC | TTT | GCC | CAA | GTT | AAA | CAA | ATG | TAT | AAG | ACA | CCA | GCC | ATA | AAA | GAT | TTT | GGT | GGT | TTC | AAT | TTT | TCA | CAA | ATA | TTG | CCT | GAT | TCC | TCT | AAG | CCA | ACA | AAG | AGA | TCA | TTT | ATT | GAG | GAT | TTG | CTC | TTC | AAC | AAG | GTG | ACT | CTC | GCT | GAT | GCT | GGT | TTT | ATG | AAG | CAA | TAT | GGC | GAA | TGC | CTA | GGT | GAT | ATT | AGT | GCT | AGA | GAC | CTC | ATT | TGT | GCC | CAA | AAG | TTC | AAT | GGA | CTT | ACA | GTC | CTA | CCA | CCA | TTG | CTC | ACA | GAT | GAA | ATG | ATT | GCT | GCT | TAC | ACC | GCC | GCA | CTA | GTT | AGC | GGT | ACT | GCC | ACC | GCT | GGC | TGG | ACA | TTC | GGT | GCT | GGA | GCT | GCT | CTT | CAA | ATA | CCT | TTT | GCT | ATG | CAA | ATG | GCT | TAT | AGG | TTT | AAT | GGC | ATT | GGA | GTA | ACT | CAA | AAT | GTT | CTC | TAT | GAG | AAT | CAA | AAG | CAG | ATT | GCC | AAC | CAA | TTT | AAC | AAG | GCA | ATC | AGT | CAA | ATT | CAA | GAA | TCA | CTT | ACT | ACA | ACA | TCC | ACT | GCA | TTG | GGC | AAG | CTG | CAA | GAC | GTT | GTC | AAC | CAG | AAT | GCT | CAA | GCG | TTA | AAT | ACA | CTT | GTT | AAA | CAA | CTC | AGC | TCC | AAT | TTT | GGT | GCT | ATT | TCA | AGT | GTT | TTA | AAT | GAC | ATT | TTA | TCA | CGA | CTT | GAC | AAA | GTT | GAG | GCA | GAA | GTA | CAA | ATT | GAC | AGG | TTG | ATT | ACA | GGC | AGA | TTA | CAA | AGC | CTC | CAA | ACC | TAT | GTA | ACA | CAA | CAA | CTA | ATC | AGA | GCT | GCT | GAA | ATC | AGA | GCT | TCT | GCC | AAC | CTT | GCT | GCT | ACT | AAA | ATG | TCT | GAG | TGT | GTT | CTT | GGA | CAA | TCA | AAA | AGA | GTT | GAC | TTC | TGT | GGA | AAA | GGC | TAT | CAC | CTG | ATG | TCT | TTC | CCC | CAA | GCT | GCT | CCA | CAT | GGT | GTT | GTC | TTC | CTA | CAT | GTT | ACT | TAT | GTT | CCA | TCG | CAG | GAA | AGA | AAC | TTC | ACC | ACA | GCT | CCG | GCG | ATT | TGT | CAT | GAA | GGC | AAA | GCA | CAC | TTT | CCG | CGT | GAA | GGT | GTC | TTT | GTA | TCT | AAT | GGC | ACT | TCG | TGG | TTT | ATC | ACA | CAG | AGG | AAT | TTC | TAT | TCA | CCA | CAG | ACA | ATT | ACA | ACA | GAC | AAT | ACA | TTT | GTT | GCT | GGA | AAT | TGT | GAT | GTC | GTA | ATT | GGC | ATC | ATT | AAC | AAT | ACT | GTT | TAT | GAT | CCT | CTG | CAA | CCT | GAG | CTT | GAC | TCA | TTC | AAA | GAA | GAA | CTG | GAC | AAG | TAC | TTC | AAA | AAT | CAT | ACA | TCA | CCA | GAT | GTT | GAT | CTC | GGC | GAC | ATT | TCT | GGC | ATT | AAT | GCT | TCC | GTC | GTC | AAT | ATT | CAA | AAA | GAA | ATT | GAC | CGC | CTC | AAT | GAG | GTT | GCC | AAA | AAT | CTA | AAT | GAA | TCG | CTC | ATT | GAC | CTT | CAA | GAA | CTT | GGT | AAA | TAT | GAG | CAA | TAC | ATA | AAA | TGG | CCA | TGG | TAC | GTT | TGG | CTC | GGC | TTC | ATT | GCT | GGA | CTC | ATT | GCC | ATC | GTC | ATG | GCC | ACC | ATA | CTG | CTT | TGT | TGC | ATG | ACC | AGT | TGT | TGC | AGT | TGC | CTC | AAG | GGT | GTA | TGC | TCT | TGT | GGT | TCT | TGC | TGC | AAA | TTT | GAT | GAG | GAT | GAC | TCT | GAG | CCT | GTG | CTC | AAA | GGA | GTC | AAA | TTA | CAC | TAC | ACA | TAA |
KY417145_Bat_SARS_like_CoV_Rf4092 | TTG | GTT | ACA | CAG | CTT | TTC | TCA | TTG | GTT | ACA | CAG | CTG | C---AA | CAA | CAT | GTG | TCA | CGG | GGC | CTA | C-- | AAC | AGA | GAA | TAA | GTT | --G | AAC | ATC | TCC | TCA | GGT | AGT | AGG | GGT | GTT | TAT | TAC | CCT | GAT | GAT | ATT | TTT | CGT | TCC | GAT | GTT | AGT | GTG | TTA | GTG | ACA | GGA | CCC | TTT | CTC | CGT | TTT | AAC | ACT | ACT | CTC | ACG | TGG | TAT | AAC | TCA | TGG | AAC | C-- | -AA | GCT | TAT | TCT | TCA | --- | --- | --- | --- | --- | --- | CCT | ATC | TTG | CCC | TTT | GGG | CAT | GGT | GTT | TAC | TTT | TCA | ACC | ATT | GAC | AAA | TCC | AAT | GTT | GTC | AGG | GGT | TGG | ATC | TTT | GGA | ACC | ACG | TTA | GAT | AAC | ACT | ACT | CAA | TCT | GCA | TTG | CTT | GTG | AAT | AAT | GGT | AGT | GCT | ATT | ACA | ATA | CAA | GTC | TGT | TAC | TTC | CAA | TTC | TGT | GAC | AAC | CCT | GCT | TTT | GTA | GTT | ACA | GCC | GGT | --- | --- | --- | --- | GC- | --- | -A- | CAA | ACA | AGC | ACT | GCT | ATT | TAT | ACC | AAC | TTA | CGT | AAC | TGT | ACG | TAT | GTG | GAC | ACA | CTA | CGT | GAC | CTA | CCA | TTA | AGT | CTC | ACA | G---AG | GTT | GAT | GGT | GGT | TTT | AAA | CAC | TTA | CGT | GAG | TTT | GTA | TTC | AAG | ACT | AGT | GAT | GGT | TTT | CTG | CAT | ATT | TAT | GGT | GCC | TAC | CAG | CCT | TAC | GAC | CAT | GCC | ATA | GGTGCTACGGCTGCA | CTA | CCA | GCG | CAG | TTC | TTG | CCC | TTA | AAG | CCC | CTA | TGG | AAA | CTG | CCC | CTT | GGT | CTA | AAT | ATT | ACT | AGT | TAT | AAG | GTT | GTT | ACA | AC- | TTT | AAA | ACC | CAC | AAA | TCA | GG- | --- | --- | --- | --- | --- | --C | CTT | TCA | AG- | --- | --- | --- | -CT | GTT | TAC | ATA | GTG | GGC | AAT | TTA | AAA | CAT | ACA | ACT | ATG | ATG | TTG | TCT | TTT | AAT | GAA | AAT | GGC | ACT | ATG | TCC | AAT | GCT | GTT | GAT | TGT | TCA | CAG | GAC | CCT | TTG | GCT | GAG | CTA | AAG | TGC | ACA | CTC | AAG | CTG | TCT | GAT | GTA | GGT | AAA | GGC | ATT | TAC | CAA | ACG | TCA | AAC | TTC | CGA | GTT | CAA | CCT | ACT | GTT | GAC | GTT | GTG | CGC | TTT | CCC | AAT | ATT | ACT | AAC | TTG | TGT | CCT | TTT | GAT | GCA | GTT | TTT | AAT | GCC | ACC | CGC | TTT | CCC | TCT | GTT | TAT | GCT | TGG | GAG | CGA | GTT | AAG | ATT | TCT | AAT | TGT | GTT | GCA | GAC | TAT | ACG | GCT | TTT | TAC | AAC | TCA--- | ACC | TCT | TTT | TCA | ACT | TTC | AAA | TGC | TAC | GGA | GTT | TCT | CCT | TCT | AAG | TTG | ATT | GAT | CTT | TGC | TTT | ACA | AGT | GTG | TAT | GCT | GAT | ACA | TTC | TTG | ATA | AGG | TTT | TCT | GAG | GTT | CGC | CAA | GTA | GCA | CCA | GGT | GAA | ACT | GGT | GTT | ATA | GCT | GAC | TAC | AAT | TAT | AAG | CTA | CCT | GAT | GAT | TTT | ACT | GGT | TGT | GTT | ATA | GCT | TGG | AAC | ACT | GCC | AAA | CAG | GAC | GTT | GG- | --- | --- | --- | --- | --T | AGT | TAT | TTT | TAT | AGG | TCT | CAC | CGC | TCA | AGT | AAG | CTT | AAA | CCA | TTC | GAG | CGA | GAT | CTT | TCA | TCT | GAT | GA- | --A | AAC | GGT | GTA | CGT | ACA | CTG | AGC | AC- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --G | TAT | GAT | TTT | AAC | CCT | AAC | GTA | CCT | CTT | GAT | TAT | CAA | GCT | ACT | AGG | GTA | GTT | GTG | CTT | TCA | TTT | GAG | CTT | CTA | AAT | GCA | CCT | GCA | ACA | GTT | TGT | GGA | CCA | AAA | CTG | TCC | ACA | CAA | CTT | GTT | AAG | AAC | CAG | TGT | GTC | AAT | TTT | AAC | TTT | AAT | GGA | CTC | AAA | GGT | ACT | GGT | GTT | TTG | ACT | GAT | TCC | TCT | AAG | AGA | TTC | CAG | TCC | TTT | CAA | CAG | TTC | GGT | CGT | GAC | ACA | TCT | GAC | TTT | ACG | GAC | TCA | GTG | CGT | GAC | CCT | CAA | ACC | TTG | GAC | ATA | CTT | GAT | ATC | ACG | CCA | TGT | TCT | TTT | GGT | GGT | GTG | AGT | GTA | ATA | ACA | CCT | GGA | ACA | AAT | GCT | TCA | TCT | GAG | GTG | GCT | GTT | CTT | TAT | CAA | GAT | GTC | AAT | TGC | ACT | GAT | GTG | CCT | ACC | GTC | ATC | CGT | GCT | GAC | CAA | CTC | ACA | CCT | GCT | TGG | CGT | GTT | TAC | TCG | ACC | GGA | GTA | AAT | G------TG | TTT | CAA | ACA | CAA | GCT | GGC | TGT | CTT | ATT | GGA | GCT | GAA | CAT | GTT | AAC | GCT | TCA | TAT | GAG | TGT | GAC | ATT | CCT | ATT | GGT | GCT | GGC | ATT | TGT | GCT | AGC | TAC | CAT | ACA | GCT | TCT | ACT | C-- | --- | --- | --- | -TA | CGT | GGT | GTA | GGT | CAG | AAA | TCC | ATT | GTG | GCT | TAC | ACT | ATG | TCT | TTG | GGT | GCA | GAA | AAT | TCT | ATT | GCT | TAT | GCT | AAT | AAT | TCA | ATT | GCC | ATA | CCT | ACA | AAT | TTT | TCA | ATC | AGT | GTC | ACA | ACT | GAA | GTG | ATG | CCT | GTT | TCA | ATG | GCT | AAG | ACA | TCA | GTA | GAT | TGT | ACA | ATG | TAC | ATC | TGT | GGT | GAT | TCT | CAG | GAG | TGC | AGT | AAC | TTA | CTT | CTC | CAG | TAT | GGA | AGT | TTC | TGC | ACG | CAA | TTA | AAT | CGT | GCT | CTC | ACG | GGC | GTT | GCC | TTA | GAA | CAG | GAC | AAA | AAT | ACA | CAG | GAT | GTT | TTT | GCC | CAG | GTT | AAA | CAA | ATG | TAC | AAG | ACA | CCA | GCC | ATA | AAG | GAT | TTT | GGC | GGT | TTC | AAT | TTT | TCA | CAA | ATA | TTG | CCT | GAT | CCT | TCA | AAG | CCA | ACA | AAG | AGA | TCA | TTT | ATT | GAA | GAC | TTA | CTC | TTC | AAC | AAG | GTC | ACT | CTT | GCT | GAT | GCT | GGC | TTT | ATG | AAA | CAA | TAT | GGC | GAA | TGC | CTA | GGC | GAT | ATT | AGT | GCT | AGA | GAC | CTC | ATT | TGT | GCT | CAG | AAG | TTC | AAC | GGA | CTT | ACT | GTC | CTA | CCA | CCA | TTG | CTC | ACA | GAT | GAA | ATG | ATT | GCT | GCG | TAC | ACT | GCT | GCC | CTT | GTC | AGT | GGT | ACT | GCT | ACT | GCT | GGC | TGG | ACA | TTC | GGT | GCT | GGT | GCT | GCT | CTT | CAA | ATA | CCT | TTT | GCT | ATG | CAA | ATG | GCA | TAT | AGG | TTC | AAT | GGC | ATT | GGA | GTT | ACT | CAA | AAT | GTT | CTC | TAT | GAG | AAT | CAA | AAA | CAG | ATC | GCC | AAT | CAA | TTC | AAC | AAG | GCG | ATC | AGT | CAA | ATT | CAA | GAA | TCA | CTT | ACA | ACA | ACA | TCA | ACT | GCA | TTG | GGC | AAG | CTG | CAA | GAC | GTT | GTC | AAC | CAG | AAC | GCT | CAA | GCA | TTG | AAC | ACA | CTT | GTT | AAA | CAG | CTT | AGC | TCC | AAT | TTC | GGT | GCA | ATT | TCA | AGT | GTG | CTA | AAT | GAC | ATT | CTT | TCA | CGA | CTA | GAC | AAA | GTC | GAG | GCA | GAG | GTG | CAA | ATT | GAC | AGG | TTG | ATC | ACA | GGC | AGA | TTG | CAG | AGC | CTT | CAA | ACC | TAT | GTA | ACA | CAA | CAA | CTA | ATC | AGA | GCA | GCT | GAA | ATC | AGA | GCT | TCT | GCT | AAC | CTC | GCT | GCT | ACT | AAA | ATG | TCT | GAG | TGT | GTT | CTT | GGA | CAA | TCA | AAA | AGA | GTT | GAC | TTC | TGT | GGA | AGA | GGC | TAT | CAT | CTT | ATG | TCT | TTT | CCT | CAG | GCT | GCT | CCG | CAT | GGT | GTT | GTT | TTC | TTA | CAT | GTC | ACA | TAT | GTG | CCA | TCG | CAT | GAG | AAA | AAC | TTC | ACC | ACA | GCT | CCA | GCA | ATT | TGT | CAT | GAA | GGC | AAA | GCC | TAC | TTC | CCG | CGT | GAA | GGT | GTT | TTT | GTA | TCT | AAT | GGC | ACT | TCT | TGG | TTC | ATT | ACA | CAG | AGG | AAT | TTT | TAC | TCA | CCA | CAA | ATA | ATC | ACA | ACA | GAT | AAT | ACA | TTT | GTT | GCT | GGA | AAC | TGT | GAT | GTC | GTA | ATT | GGC | ATC | ATT | AAC | AAT | ACA | GTC | TAT | GAT | CCT | CTG | CAA | CCT | GAG | CTT | GAC | TCA | TTC | AAA | GAA | GAG | CTG | GAC | AAG | TAC | TTC | AAA | AAT | CAC | ACA | TCA | CCA | GAT | GTT | GAT | CTC | GGC | GAC | ATT | TCA | GGC | ATT | AAT | GCT | TCT | GTC | GTC | AAT | ATT | CAA | AAA | GAA | ATT | GAC | CGC | CTC | AAC | GAG | GTT | GCC | AAA | AAT | CTA | AAT | GAA | TCG | CTC | ATT | GAC | CTC | CAA | GAA | CTT | GGT | AAA | TAT | GAG | CAA | TAC | ATC | AAA | TGG | CCC | TGG | TAC | GTT | TGG | CTC | GGC | TTT | ATT | GCT | GGA | CTG | ATT | GCT | ATC | GTT | ATG | GCC | ACT | ATA | CTG | CTT | TGT | TGT | ATG | ACC | AGC | TGT | TGC | AGC | TGC | CTC | AAG | GGT | GCA | TGC | TCT | TGT | GGT | TCC | TGC | TGC | AAA | TTT | GAT | GAG | GAC | GAC | TCT | GAG | CCA | GTG | CTC | AAA | GGA | GTC | AAA | TTA | CAC | TAC | ACA | TAA |
KJ473816_BtRs_BetaCoV_YN2013 | TTG | TTT | TTC | TTC | CTT | TTA | TTG | CTG | --- | --- | CAG | ATA | C---GT | GTC | TCA | ATT | TTA | CTA | ATC | TTG | C-- | AGC | GCC | TGC | TTA | TAA | --C | ATA | GCC | TCC | TCG | TCC | CGA | CGT | GGT | GTG | TAT | TAT | CCT | GAT | GAC | ATT | TTT | CGG | TCT | GAC | TTC | TTA | CAT | TTG | GTA | AAT | GAT | TAT | TTT | CTG | CCA | TTT | GGT | TCC | AAT | GTA | ACT | CAA | TTT | TTT | ACT | CAG | GGT | A-- | -CT | AAT | ATT | GAT | AAC | --- | --- | --- | --- | --- | --- | CCC | ACT | TTG | CCA | TTT | AGA | GAT | GGT | GTG | TAT | TTT | GCT | GCC | ACA | GAG | AAG | TCT | AAT | ATA | GTT | AGA | GGC | TGG | ATT | TTT | GGT | TCT | ACT | TTG | GAC | TCC | ACC | TCC | CAG | TCT | GCT | ATA | ATT | TTA | AAT | AAT | TCT | ACA | AAT | TTG | ATT | GTG | CGG | GTT | TGT | AAT | TTT | GAA | TTA | TGT | AAA | GTG | CCA | CTA | TTT | GTG | GTT | TTT | AAA | TCT | --- | --- | --- | --- | AAT | AAT | TC- | CCA | GTT | ATC | ACA | CTT | GTT | TAG | TGA | TAG | TT- | -TT | AAT | TGT | ACC | TTT | GAG | TAT | GTT | TCT | AGA | GCT | TTC | TCT | CTT | GAT | ATA | CGC | G---AG | CAG | TCA | GGT | AAT | TTT | GTG | GAT | TTA | AGA | GAG | TTT | GTT | TTT | CGT | AAT | AGG | AAC | GGC | TTC | CTT | CAT | ATT | TAT | GAG | GGT | TAT | GAG | GCT | ATT | TCT | ATA | GTT | AGA | GG------------A | TTG | CCT | GCC | GGG | TTC | AAC | GTC | CTC | AAA | CCA | TTA | TTA | AAG | ATA | CCA | TTT | GGC | CTT | AAT | GTT | ACG | TCT | TTT | AAG | ACT | TTT | CTT | GCA | GTT | TAC | AGG | GTG | GCA | GCA | GG- | --- | --- | --- | --- | --- | --T | AGT | ATC | AGT | GTA | GCG | AGC | TCT | GCT | TAT | TAT | GTA | GGT | TAT | TTA | AAA | CCA | TTA | ACT | TTC | ATG | CTT | AGT | TAT | GAT | TTA | AAT | GGT | ACT | ATT | AAG | AAT | GCT | GTT | GAT | TGT | TCT | CAG | GAT | CCG | CTC | GCT | GAG | TTA | AAG | TGT | ACT | ATT | AAG | AAT | TTT | AAT | GTT | TCT | AAA | GGC | ATT | TAC | CAG | ACT | TCA | AAC | TTC | AGA | GTG | TCT | CCA | ACT | CGG | GAG | GTT | GTT | AGA | TTT | CCT | AAT | ATT | ACA | AAT | CGC | TGT | CCT | TTT | GAC | AGC | ATC | TTT | AAT | GCT | TCC | AGA | TTT | CCT | TCT | GTG | TAT | GCG | TGG | GAA | AGG | ACT | AAA | ATT | TCT | GAT | TGT | GTT | GCG | GAT | TAT | ACT | GTT | CTC | TAC | AAC | TCA--- | ACC | TTA | TTT | TCA | ACT | TTT | AAG | TGT | TAT | GGA | GTT | TCT | CCC | TCT | AAG | TTG | ATT | GAT | TTA | TGC | TTT | ACA | AGT | GTG | TAT | GCT | GAT | ACA | TTC | TTG | ATA | AGA | TTT | TCT | GAA | GTC | AGG | CAA | GTT | GCA | CCG | GGT | GAA | ACT | GGT | GTT | ATT | GCT | GAC | TAT | AAT | TAT | AGG | CTA | CCT | GAT | GAC | TTC | ACA | GGC | TGT | GTC | ATA | GCT | TGG | AAT | ACA | GCT | AAT | CAA | GAC | GTT | GG- | --- | --- | --- | --- | --T | AGT | TAT | TTT | TAT | AGA | TCT | CAT | CGC | TCC | ACC | AAA | TTA | AAG | CCA | TTT | GAG | CGT | GAT | CTT | TCT | TCG | GAC | GA- | --G | AAT | GGT | GTT | CGT | ACA | CTT | AGT | AC- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --A | TAT | GAC | TTC | AAC | CCT | AAT | GTA | CCT | CTT | GAT | TAT | CAA | GCC | ACC | AGA | GTG | GTA | GTG | CTT | TCA | TTT | GAA | TTG | CTG | AAT | GCA | CCT | GCT | ACA | GTT | TGT | GGA | CCT | AAG | TTG | TCC | ACG | GAA | CTA | GTT | AAG | AAC | CAG | TGT | GTC | AAT | TTC | AAT | TTT | AAT | GGA | CTC | AAA | GGT | ACT | GGT | GTC | TTG | ACT | TCG | TCT | TCA | AAA | AGA | TTC | CAG | TCG | TTT | CAG | CAA | TTC | GGT | CGT | GAC | GCT | TCT | GAC | TTT | ACG | GAT | TCA | GTG | CGC | GAC | CCA | CAG | ACA | TTA | GAA | ATA | CTT | GAC | ATT | ACA | CCA | TGT | TCT | TTT | GGT | GGT | GTG | AGT | GTA | ATA | ACA | CCT | GGA | ACA | AAT | GCT | TCA | TCC | GAA | GTA | GCT | GTT | CTT | TAT | CAA | GAT | GTA | AAT | TGC | ACT | GAT | GTC | CCA | ACT | GCC | ATA | CGT | GCA | GAC | CAA | TTA | ACA | CCA | GCT | TGG | CGC | GTT | TAC | TCA | ACT | GGA | GTA | AAT | G------TG | TTT | CAA | ACA | CAA | GCT | GGC | TGT | CTT | ATT | GGA | GCT | GAA | CAT | GTT | AAC | GCT | TCG | TAT | GAG | TGT | GAC | ATT | CCT | ATT | GGT | GCT | GGC | ATT | TGT | GCT | AGC | TAC | CAT | ACA | GCT | TCT | ACT | C-- | --- | --- | --- | -TA | CGT | AGT | ATA | GGT | CAG | AAA | TCC | ATT | GTG | GCT | TAC | ACT | ATG | TCT | TTG | GGT | GCA | GAA | AAT | TCT | ATT | GCT | TAT | GCT | AAT | AAT | TCA | ATT | GCC | ATA | CCT | ACA | AAT | TTT | TCA | ATC | AGT | GTC | ACA | ACT | GAA | GTG | ATG | CCT | GTT | TCA | ATG | GCT | AAG | ACA | TCA | GTA | GAT | TGT | ACA | ATG | TAC | ATC | TGT | GGT | GAT | TCT | CAG | GAG | TGC | AGT | AAC | TTA | CTT | CTC | CAG | TAT | GGA | AGT | TTC | TGC | ACG | CAA | TTA | AAT | CGT | GCT | CTT | ACG | GGC | GTT | GCC | TTA | GAA | CAG | GAC | AAA | AAT | ACA | CAG | GAG | GTT | TTT | GCC | CAG | GTT | AAA | CAA | ATG | TAC | AAG | ACA | CCA | GCC | ATA | AAG | GAT | TTT | GGC | GGT | TTC | AAT | TTT | TCA | CAA | ATA | TTG | CCT | GAT | CCT | TCA | AAG | CCA | ACA | AAG | AGA | TCA | TTT | ATT | GAA | GAC | TTA | CTC | TTC | AAC | AAG | GTC | ACT | CTT | GCT | GAT | GCT | GGC | TTT | ATG | AAA | CAA | TAT | GGC | GAA | TGC | CTA | GGC | GAT | ATT | AGT | GCT | AGA | GAC | CTC | ATT | TGT | GCT | CAG | AAG | TTC | AAC | GGA | CTT | ACT | GTC | CTA | CCA | CCA | TTG | CTC | ACA | GAT | GAA | ATG | ATT | GCT | GCG | TAC | ACT | GCT | GCC | CTT | GTC | AGT | GGT | ACT | GCT | ACT | GCT | GGC | TGG | ACA | TTC | GGT | GCT | GGT | GCT | GCT | CTT | CAA | ATA | CCT | TTT | GCT | ATG | CAA | ATG | GCA | TAT | AGG | TTC | AAT | GGC | ATT | GGA | GTT | ACT | CAA | AAT | GTT | CTC | TAT | GAG | AAT | CAA | AAA | CAG | ATC | GCC | AAT | CAA | TTC | AAC | AAG | GCG | ATC | AGT | CAA | ATT | CAA | GAA | TCA | CTT | ACA | ACA | ACA | TCA | ACT | GCA | TTG | GGC | AAG | CTG | CAA | GAC | GTT | GTC | AAC | CAG | AAC | GCT | CAA | GCA | TTG | AAC | ACA | CTT | GTT | AAA | CAG | CTT | AGC | TCC | AAT | TTT | GGT | GCA | ATT | TCA | AGT | GTG | CTA | AAT | GAC | ATT | CTT | TCA | CGA | CTA | GAC | AAA | GTC | GAG | GCA | GAG | GTG | CAA | ATT | GAC | AGG | TTG | ATC | ACA | GGC | AGA | TTG | CAG | AGC | CTT | CAA | ACC | TAT | GTA | ACA | CAA | CAA | CTA | ATC | AGA | GCA | GCT | GAA | ATC | AGA | GCT | TCT | GCT | AAC | CTT | GCT | GCT | ACT | AAA | ATG | TCT | GAG | TGT | GTT | CTT | GGA | CAA | TCA | AAA | AGA | GTT | GAC | TTC | TGT | GGA | AGA | GGC | TAT | CAT | CTT | ATG | TCT | TTT | CCT | CAG | GCT | GCT | CCG | CAT | GGT | GTT | GTT | TTC | TTA | CAT | GTC | ACA | TAT | GTG | CCA | TCG | CAT | GAG | AAA | AAC | TTC | ACC | ACA | GCT | CCA | GCA | ATT | TGT | CAT | GAA | GGC | AAA | GCC | TAC | TTC | CCG | CGT | GAA | GGT | GTT | TTT | GTA | TCT | AAT | GGC | ACT | TCT | TGG | TTC | ATT | ACA | CAG | AGG | AAT | TTT | TAC | TCA | CCA | CAA | ATA | ATC | ACA | ACA | GAT | AAT | ACA | TTT | GTT | GCT | GGA | AAC | TGT | GAT | GTC | GTA | ATT | GGC | ATC | ATT | AAC | AAT | ACA | GTC | TAT | GAT | CCT | CTG | CAA | CCT | GAG | CTT | GAC | TCA | TTC | AAA | GAA | GAG | CTG | GAC | AAG | TAC | TTC | AAA | AAT | CAC | ACA | TCA | CCA | GAT | GTT | GAT | CTC | GGC | GAC | ATT | TCA | GGC | ATT | AAT | GCT | TCT | GTC | GTC | AAT | ATT | CAA | AAA | GAA | ATT | GAC | CGC | CTC | AAC | GAG | GTT | GCC | AAA | AAT | CTA | AAT | GAA | TCG | CTC | ATT | GAC | CTC | CAA | GAA | CTT | GGT | AAA | TAT | GAG | CAA | TAC | ATC | AAA | TGG | CCC | TGG | TAC | GTT | TGG | CTC | GGC | TTT | ATT | GCT | GGA | CTG | ATT | GCT | ATC | GTT | ATG | GCC | ACT | ATA | CTG | CTT | TGT | TGT | ATG | ACC | AGC | TGT | TGC | AGC | TGC | CTA | AAG | GGT | GCA | TGC | TCT | TGT | GGT | TCC | TGC | TGC | AAA | TTT | GAT | GAG | GAC | GAC | TCT | GAG | CCA | GTG | CTC | AAA | GGA | GTC | AAA | TTA | CAC | TAC | ACA | TAA |
KY770858_Bat_CoV_Anlong_103 | TTG | TTT | TTC | TTC | CTT | TTA | TTA | CTG | --- | --- | CAG | ATA | C---GT | GTC | TCA | ATT | TTA | CTA | ATC | TTG | C-- | AGC | GCC | TGC | TTA | TAA | --C | ATA | GCC | TCC | TCG | TCT | CGA | CGT | GGT | GTG | TAT | TAT | CCT | GAT | GAC | ATT | TTT | CGG | TCT | GAC | TTT | TTA | CAT | TTG | GTA | AAT | GAT | TAT | TTT | CTG | CCA | TTT | GGT | TCC | AAT | GTA | ACT | CAA | TTT | TAT | ACT | CAG | GGT | A-- | -CT | AAT | ATT | GAT | AAC | --- | --- | --- | --- | --- | --- | CCC | ACT | TTG | CCA | TTT | AGA | GAT | GGT | GTG | TAT | TTT | GCT | GCC | ACA | GAG | AAG | TCT | AAT | ATA | GTT | AGA | GGC | TGG | ATT | TTT | GGT | TCT | ACT | TTG | GAC | TCC | ACC | TCC | CAG | TCT | GCT | ATA | ATT | TTA | AAT | AAT | TCT | ACA | AAT | TTG | ATT | GTG | CGG | GTT | TGT | AAT | TTT | GAA | TTA | TGT | AAA | GTG | CCA | CTA | TTT | GTG | GTT | TTT | AAA | TCT | --- | --- | --- | --- | AAT | AAT | TC- | CCA | GTT | ATC | ACA | CTT | GTT | TAG | TGA | TAG | TT- | -TT | AAT | TGT | ACC | TTT | GAG | TAT | GTT | TCT | AGG | GCT | TTC | TCT | CTT | GAT | ATA | CGC | G---AG | CAG | TCA | GGT | AAT | TTT | GTG | GAT | TTA | AGA | GAG | TTT | GTT | TTT | CGT | AAT | AGG | AAT | GGC | TTC | CTT | CAT | ATT | TAT | GAG | GGT | TAT | GAG | GCT | ATT | TCT | ATA | GTT | AGA | GG------------A | TTG | CCT | GCC | GGG | TTC | AAC | GTC | CTC | AAG | CCA | TTA | TTA | AAG | ATA | CCA | TTT | GGC | CTT | AAT | GTT | ACG | TCT | TTT | AAG | ACT | TTT | CTT | ACA | GTT | TAT | AGG | GTG | GCA | GCA | GG- | --- | --- | --- | --- | --- | --T | AGT | ATT | AGT | GTA | GCG | AGC | TCT | GCT | TAT | TTT | GTA | GGT | TAT | TTA | AAA | CCA | TTA | ACT | TTC | ATG | CTT | AGT | TAT | GAT | TTA | AAT | GGT | ACT | ATT | AAT | AAT | GCT | GTT | GAT | TGT | TCT | CAG | GAT | CCG | CTC | GCT | GAG | TTA | AAG | TGT | ACT | ATT | AAG | AAT | TTT | AAT | GTT | TCT | AAA | GGC | ATT | TAT | CAG | ACT | TCA | AAC | TTC | AGA | GTG | TCT | CCA | ACT | CGG | GAG | GTT | GTT | AGA | TTT | CCT | AAT | ATT | ACA | AAT | CGC | TGT | CCT | TTT | GAC | AGC | ATC | TTT | AAT | GCT | TCC | AGA | TTT | CCT | TCT | GTG | TAT | GCG | TGG | GAA | AGG | ACT | AAA | ATT | TCT | GAT | TGT | GTT | GCG | GAT | TAT | ACT | GTT | CTC | TAC | AAC | TCA--- | ACC | TCA | TTT | TCA | ACT | TTT | AAG | TGT | TAT | GGA | GTT | TCT | CCC | TCT | AAG | TTG | ATT | GAT | TTA | TGC | TTT | ACA | AGT | GTG | TAT | GCT | GAT | ACA | TTC | TTG | ATA | AGA | TTT | TCT | GAA | GTC | AGG | CAA | GTT | GCA | CCG | GGT | GAA | ACT | GGT | GTT | ATT | GCT | GAC | TAT | AAT | TAT | AGG | CTA | CCT | GAT | GAC | TTC | ACA | GGC | TGT | GTC | ATA | GCT | TGG | AAT | ACA | GCT | AAT | CAA | GAT | GTT | GG- | --- | --- | --- | --- | --T | AGT | TAT | TTT | TAT | AGA | TCT | CAT | CGC | TCC | ACC | AAA | TTA | AAG | CCA | TTT | GAG | CGT | GAT | CTT | TCT | TCT | GAC | GA- | --G | AAT | GGT | GTT | CGT | ACA | CTT | AGT | AC- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --A | TAT | GAC | TTC | AAC | CCT | TAT | GTA | CCT | CTT | GAT | TAT | CAA | GCT | ACC | AGA | GTG | GTA | GTG | CTT | TCA | TTT | GAA | TTG | CTG | AAT | GCA | CCT | GCT | ACA | GTT | TGT | GGA | CCT | AAG | TTG | TCC | ACG | GAA | CTA | GTT | AAG | AAC | CAA | TGT | GTC | AAT | TTC | AAT | TTT | AAT | GGA | CTC | AAA | GGT | ACT | GGT | GTC | TTG | AGT | TCG | TCT | TCA | AAA | AGA | TTC | CAG | TCG | TTT | CAG | CAA | TTC | GGT | CGT | GAC | GCT | TCT | GAC | TTT | ACG | GAT | TCA | GTG | CGC | GAC | CCA | CAG | ACA | TTA | GAA | ATA | CTT | GAC | ATT | ACA | CCA | TGT | TCT | TTT | GGT | GGT | GTG | AGT | GTA | ATA | ACA | CCT | GGA | ACA | AAT | GCT | TCA | TCT | GAA | GTA | GCT | GTT | CTT | TAT | CAA | GAT | GTA | AAT | TGC | ACT | GAT | GTC | CCA | ACT | GCC | ATA | CGT | GCA | GAC | CAA | TTA | ACA | CCA | GCT | TGG | CGC | GTT | TAC | TCA | ACT | GGA | GTA | AAT | G------TA | TTT | CAA | ACA | CAA | GCT | GGC | TGT | CTT | ATT | GGA | GCT | GAA | CAT | GTT | AAC | GCT | TCA | TAT | GAG | TGT | GAC | ATT | CCT | ATT | GGT | GCT | GGC | ATT | TGT | GCT | AGC | TAC | CAT | ACA | GCT | TCT | ACT | C-- | --- | --- | --- | -TA | CGT | AGT | GTA | GGT | CAG | AAA | TCC | ATT | GTG | GCT | TAC | ACT | ATG | TCC | TTG | GGT | GCA | GAA | AAT | TCT | ATT | GCT | TAT | GCT | AAT | AAT | TCA | ATT | GCC | ATA | CCT | ACA | AAT | TTT | TCA | ATC | AGT | GTC | ACA | ACT | GAA | GTG | ATG | CCT | GTT | TCA | ATG | GCT | AAG | ACA | TCA | GTA | GAT | TGT | ACA | ATG | TAC | ATC | TGT | GGT | GAT | TCT | CAG | GAG | TGC | AGT | AAC | TTA | CTT | CTC | CAG | TAT | GGA | AGT | TTT | TGC | ACG | CAA | TTA | AAT | CGC | GCT | CTC | ACG | GGC | GTT | GCC | TTA | GAA | CAG | GAC | AAA | AAT | ACA | CAG | GAG | GTT | TTT | GCC | CAG | GTT | AAA | CAA | ATG | TAC | AAG | ACA | CCA | GCC | ATA | AAG | GAT | TTT | GGC | GGT | TTC | AAT | TTT | TCA | CAA | ATA | TTG | CCT | GAT | CCT | TCA | AAG | CCA | ACA | AAG | AGA | TCA | TTT | ATT | GAA | GAC | CTA | CTC | TTC | AAC | AAG | GTG | ACT | CTT | GCT | GAT | GCT | GGC | TTT | ATG | AAA | CAA | TAT | GGC | GAA | TGC | CTA | GGC | GAT | ATT | AGT | GCT | AGA | GAC | CTC | ATT | TGT | GCT | CAG | AAG | TTC | AAT | GGA | CTT | ACT | GTC | CTG | CCA | CCA | TTG | CTC | ACA | GAT | GAA | ATG | ATT | GCT | GCA | TAC | ACT | GCT | GCC | CTT | GTC | AGT | GGT | ACT | GCT | ACT | GCT | GGC | TGG | ACA | TTC | GGT | GCT | GGT | GCT | GCT | CTT | CAA | ATA | CCT | TTT | GCT | ATG | CAA | ATG | GCA | TAT | AGG | TTC | AAT | GGC | ATT | GGA | GTT | ACT | CAA | AAT | GTT | CTC | TAT | GAG | AAT | CAA | AAA | CAG | ATC | GCC | AAT | CAA | TTC | AAC | AAG | GCG | ATC | AGT | CAA | ATT | CAA | GAA | TCA | CTT | ACA | ACA | ACA | TCA | ACT | GCA | TTG | GGC | AAG | CTG | CAA | GAC | GTT | GTC | AAC | CAG | AAC | GCT | CAA | GCA | TTG | AAC | ACA | CTT | GTT | AAA | CAG | CTT | AGC | TCC | AAT | TTT | GGT | GCA | ATT | TCA | AGT | GTG | CTA | AAT | GAC | ATT | CTT | TCA | CGA | CTA | GAC | AAA | GTT | GAG | GCG | GAG | GTG | CAA | ATT | GAC | AGG | TTG | ATC | ACA | GGC | AGG | TTG | CAG | AGC | CTT | CAA | ACC | TAT | GTA | ACA | CAA | CAA | CTA | ATC | AGA | GCT | GCT | GAA | ATC | AGA | GCT | TCT | GCT | AAT | CTT | GCT | GCT | ACT | AAA | ATG | TCT | GAG | TGT | GTT | CTT | GGA | CAA | TCA | AAA | AGA | GTT | GAC | TTC | TGT | GGA | AGA | GGC | TAT | CAT | CTT | ATG | TCT | TTT | CCT | CAG | GCC | GCT | CCG | CAT | GGT | GTT | GTT | TTC | TTA | CAT | GTC | ACA | TAT | GTG | CCA | TCG | CAG | GAG | AAA | AAC | TTC | ACC | ACA | GCT | CCA | GCA | ATT | TGT | CAT | GAA | GGC | AAA | GCA | TAC | TTC | CCG | CGT | GAA | GGT | GTT | TTT | GTA | TCT | AAT | GGC | ACT | TCT | TGG | TTC | ATT | ACA | CAG | AGG | AAT | TTT | TAC | TCA | CCA | CAA | ATA | ATC | ACA | ACA | GAT | AAT | ACA | TTT | GTT | GCT | GGA | AAC | TGT | GAT | GTC | GTA | ATT | GGC | ATC | ATT | AAC | AAC | ACA | GTC | TAT | GAT | CCT | CTG | CAA | CCT | GAG | CTT | GAC | TCA | TTT | AAA | GAA | GAG | CTG | GAC | AAG | TAC | TTC | AAA | AAT | CAC | ACA | TCA | CCT | GAT | GTT | GAT | CTT | GGC | GAC | ATT | TCA | GGC | ATT | AAT | GCT | TCC | GTC | GTC | AAT | ATT | CAA | AAA | GAA | ATT | GAC | CGC | CTC | AAT | GAG | GTT | GCC | AAA | AAT | CTA | AAT | GAA | TCG | CTC | ATT | GAC | CTT | CAA | GAA | CTT | GGT | AAA | TAT | GAG | CAA | TAC | ATC | AAA | TGG | CCC | TGG | TAC | GTT | TGG | CTC | GGC | TTC | ATT | GCT | GGA | CTG | ATT | GCT | ATC | GTC | ATG | GCC | ACT | ATA | CTG | CTT | TGT | TGC | ATG | ACC | AGC | TGT | TGC | AGT | TGC | CTC | AAG | GGT | GCA | TGC | TCG | TGT | GGT | TCT | TGC | TGC | AAA | TTT | GAT | GAG | GAT | GAC | TCT | GAG | CCT | GTG | CTC | AAG | GGA | GTC | AAA | TTA | CAC | TAC | ACA | TAA |
KY417143_Bat_SARS_like_CoV_Rs4081 | TTC | TTT | TAA | GCC | TCG | GCC | TTG | TTA | CTG | CTC | AAG | ATG | G---CT | GTG | GGC | ATA | TTA | GCA | CTA | AAC | C-- | TCA | ACC | ATT | AAT | GGA | --T | AAA | TTT | TCT | TCT | TCG | CGT | AGG | GGT | GTC | TAT | TAT | AAT | GAT | GAC | ATT | TTT | CGT | TCA | GAT | GTT | TTA | CAT | CTT | ACT | CAG | GAT | TAT | TTT | CTA | CCA | TTT | GAC | ACC | AAT | CTA | ACG | CGT | TAT | TTG | TCT | TTT | AAC | A-- | -TG | GAT | TCT | GCA | ACA | AAG | GTT | TAC | TTT | GAT | AAT | CCA | ACA | TTA | CCA | TTT | GGT | GAC | GGC | ATT | TAT | TTT | GCA | GCC | ACT | GAA | AAA | TCT | AAT | GTT | GTT | AGA | GGC | TGG | ATT | TTT | GGT | TCC | ACT | ATG | GAT | AAC | ACC | ACG | CAA | TCT | GCC | ATT | ATA | GTC | AAT | AAT | TCC | ACG | CAT | ATT | ATT | ATA | CGT | GTG | TGT | TAT | TTT | AAT | TTA | TGT | AAA | GAA | CCC | ATG | TAT | GCT | ATC | TCG | AAT | GAG | --- | --- | --- | --- | CA- | --- | -G- | CAT | TAC | AAA | TCA | TGG | GTG | TAT | CAA | AAT | GCA | TAT | AAT | TGC | ACA | TAT | GAT | AGA | GTG | GAG | CAG | AGC | TTT | CAA | CTC | GAC | ACT | GCC | C---CT | CAG | ACT | GGA | AAT | TTT | AAG | GAC | TTA | CGT | GAG | TAT | GTC | TTT | AAA | AAT | AAG | GAT | GGG | TTT | CTA | AGT | GTC | TAT | AAT | GCT | TAT | TCA | CCT | ATT | GAC | ATA | CCA | AGG | GG------------T | CTT | CCT | GTT | GGT | TTT | TCG | GTG | TTG | AAA | CCA | ATT | CTT | AAA | CTC | CCT | ATA | GGT | ATA | AAT | ATT | ACC | TCT | TTT | AAG | GTA | GTT | ATG | TCC | ATG | TTT | AGC | AGA | ACA | ACT | TC- | --- | --- | --- | --- | --- | --T | AAT | TTC | CTA | CCT | GAA | ATT | GCT | GCT | TAT | TTT | GTT | GGT | AAC | TTA | AAA | TAT | AGT | ACC | TTC | ATG | CTT | AAT | TTT | AAT | GAG | AAT | GGG | ACT | ATT | ACT | GAT | GCC | ATT | GAT | TGT | GCC | CAA | AAT | CCC | CTA | TCT | GAA | TTA | AAA | TGC | ACC | ATT | AAA | AAT | TTT | AAT | GTC | AGT | AAA | GGA | ATC | TAT | CAG | ACA | TCT | AAC | TTC | AGA | GTA | TCA | CCA | ACT | CAT | GAA | GTT | GTT | AGG | TTC | CCT | AAC | ATT | ACA | AAC | CGC | TGT | CCT | TTC | GAT | AAA | GTT | TTT | AAT | GCT | AGT | CGC | TTT | CCC | AAT | GTC | TAT | GCT | TGG | GAA | AGA | ACA | AAA | ATT | TCT | GAT | TGT | GTT | GCT | GAT | TAC | ACT | GTT | CTC | TAC | AAC | TCA--- | ACT | TCA | TTT | TCA | ACT | TTT | AAA | TGT | TAT | GGA | GTT | TCT | CCC | TCT | AAG | TTG | ATT | GAT | TTG | TGC | TTT | ACA | AGT | GTG | TAT | GCT | GAT | ACA | TTC | TTG | ATA | AGA | TCT | TCA | GAA | GTA | AGG | CAA | GTT | GCA | CCA | GGT | GAA | ACT | GGT | GTT | ATT | GCT | GAC | TAT | AAC | TAC | AAA | CTG | CCT | GAT | GAC | TTT | ACA | GGC | TGT | GTC | ATA | GCT | TGG | AAC | ACT | GCT | AAA | CAA | GAT | CAG | GG- | --- | --- | --- | --- | --C | CAG | TAT | TAT | TAT | AGA | TCC | TCC | CGA | AAA | ACA | AAA | CTT | AAA | CCT | TTT | GAG | AGG | GAT | CTA | ACT | TCT | GAC | GA- | --A | AAT | GGT | GTA | CGT | ACT | CTT | AGT | AC- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --T | TAT | GAC | TTC | TAT | CCT | AAT | GTG | CCT | ATT | GAA | TAT | CAG | GCT | ACT | AGG | GTT | GTT | GTG | CTT | TCA | TTT | GAG | CTT | CTA | AAT | GCA | CCT | GCT | ACA | GTT | TGT | GGA | CCT | AAA | TTA | TCC | ACA | GCA | CTT | GTT | AAG | AAC | CAG | TGT | GTC | AAT | TTC | AAT | TTT | AAT | GGA | CTC | AAA | GGT | ATT | GGT | GTT | CTG | ACT | GAT | TCT | TCA | AAG | AGA | TTT | CAG | TCA | TTT | CAA | CAA | TTT | GGA | AGA | GAC | ACG | TCG | GAT | TTC | ACT | GAT | TCC | GTT | CGT | GAC | CCG | CAA | ACA | TTG | CAG | ATA | CTT | GAC | ATT | ACA | CCA | TGT | TCT | TTT | GGT | GGT | GTG | AGT | GTA | ATA | ACA | CCT | GGA | ACA | AAT | GCT | TCA | TCT | GAA | GTG | GCT | GTT | CTT | TAC | CAA | GAT | GTA | AAT | TGC | ACT | GAT | GTC | CCA | ACG | GCC | ATA | CGT | GCT | GAT | CAA | TTA | ACA | CCA | GCT | TGG | CGC | GTT | TAC | TCC | ACT | GGA | ATA | AAT | G------TT | TTT | CAA | ACA | CAA | GCG | GGC | TGT | CTT | ATT | GGG | GCT | GAA | CAT | GTC | AAT | GCT | TCC | TAT | GAG | TGT | GAC | ATC | CCT | ATT | GGT | GCT | GGC | ATT | TGT | GCT | AGC | TAC | CAT | ACA | GCC | TCT | ACT | T-- | --- | --- | --- | -TA | CGT | AGT | GTA | GGT | CAG | AAA | TCC | ATT | GTG | GCT | TAC | ACT | ATG | TCT | TTG | GGT | GCA | GAA | AAT | TCT | ATT | GCT | TAC | GCT | AAT | AAC | TCA | ATT | GCC | ATA | CCA | ACA | AAT | TTT | TCA | ATT | AGT | GTC | ACG | ACT | GAA | GTG | ATG | CCA | GTT | TCA | ATG | TCT | AAG | ACA | TCA | GTA | GAT | TGT | ACA | ATG | TAC | ATC | TGT | GGT | GAC | TCT | CAG | GAG | TGC | AGT | AAT | TTA | CTT | CTT | CAA | TAC | GGA | AGC | TTC | TGC | ACG | CAA | TTG | AAT | CGT | GCT | CTT | ACG | GGC | ATT | GCC | ATA | GAA | CAG | GAC | AAA | AAT | ACA | CAG | GAG | GTT | TTT | GCC | CAG | GTT | AAA | CAA | ATG | TAC | AAG | ACA | CCA | GCC | ATA | AAG | GAT | TTT | GGC | GGT | TTC | AAT | TTT | TCA | CAA | ATA | TTG | CCT | GAC | CCT | TCT | AAG | CCA | ACA | AAG | AGA | TCA | TTT | ATT | GAA | GAT | TTA | CTT | TTC | AAC | AAG | GTG | ACT | CTC | GCT | GAT | GCT | GGC | TTT | ATG | AAG | CAG | TAT | GGC | GAA | TGC | CTA | GGT | GAT | ATT | AAT | GCT | AGA | GAC | CTC | ATC | TGT | GCA | CAA | AAG | TTC | AAT | GGC | CTT | ACT | GTC | CTG | CCA | CCT | TTA | CTC | ACG | GAT | GAC | ATG | ATT | GCT | GCA | TAC | ACT | GCT | GCC | CTT | GTC | AGT | GGT | ACT | GCT | ACT | GCT | GGC | TGG | ACC | TTC | GGT | GCT | GGT | GCT | GCT | CTT | CAA | ATA | CCT | TTT | GCT | ATG | CAG | ATG | GCA | TAT | AGG | TTC | AAT | GGC | ATT | GGA | GTT | ACT | CAA | AAC | GTT | CTC | TAT | GAG | AAT | CAA | AAA | CAG | ATC | GCC | AAT | CAA | TTC | AAT | AAG | GCA | ATC | AGT | CAA | ATT | CAA | GAA | TCA | CTT | ACA | ACA | ACA | TCA | ACT | GCG | TTG | GGC | AAG | CTG | CAA | GAC | GTT | GTC | AAC | CAG | AAT | GCT | CAA | GCA | TTG | AAC | ACG | CTT | GTT | AAA | CAG | CTT | AGC | TCC | AAT | TTT | GGT | GCA | ATT | TCA | AGT | GTG | CTA | AAT | GAC | ATT | CTT | TCA | CGA | CTA | GAT | AAA | GTC | GAG | GCA | GAG | GTG | CAA | ATT | GAC | AGG | TTG | ATC | ACA | GGC | AGA | TTG | CAG | AGC | CTT | CAA | ACC | TAT | GTA | ACA | CAA | CAA | CTA | ATC | AGA | GCT | GCT | GAA | ATC | AGA | GCT | TCT | GCT | AAT | CTT | GCT | GCT | ACT | AAA | ATG | TCT | GAG | TGC | GTT | CTT | GGA | CAA | TCA | AAA | AGA | GTT | GAC | TTC | TGT | GGA | AGA | GGC | TAT | CAT | CTT | ATG | TCT | TTT | CCT | CAG | GCT | GCT | CCG | CAT | GGT | GTT | GTT | TTC | TTA | CAT | GTC | ACA | TAT | GTG | CCA | TCG | CAG | GAG | AAA | AAC | TTC | ACC | ACA | GCT | CCA | GCA | ATT | TGT | CAT | GAA | GGC | AAA | GCA | TAC | TTC | CCG | CGT | GAA | GGT | GTT | TTT | GTA | TCT | AAT | GGC | ACT | TCT | TGG | TTC | ATT | ACA | CAG | AGG | AAT | TTT | TAC | TCA | CCA | CAA | ATA | ATC | ACA | ACA | GAT | AAT | ACA | TTT | GTT | GCT | GGA | AAC | TGT | GAT | GTC | GTA | ATT | GGC | ATC | ATT | AAC | AAC | ACA | GTC | TAT | GAT | CCT | CTG | CAA | CCT | GAG | CTT | GAC | TCA | TTC | AAA | GAA | GAG | CTG | GAC | AAG | TAC | TTC | AAA | AAT | CAC | ACA | TCA | CCA | GAT | GTT | GAT | CTC | GGC | GAC | ATT | TCA | GGC | ATT | AAT | GCT | TCT | GTC | GTC | AAT | ATT | CAA | AAA | GAA | ATT | GAC | CGC | CTC | AAC | GAG | GTT | GCC | AAA | AAT | CTA | AAT | GAA | TCG | CTC | ATT | GAC | CTC | CAA | GAA | CTT | GGT | AAA | TAT | GAG | CAA | TAC | ATC | AAA | TGG | CCC | TGG | TAC | GTT | TGG | CTC | GGC | TTT | ATT | GCT | GGA | CTG | ATT | GCT | ATC | GTT | ATG | GCC | ACT | ATA | CTG | CTT | TGT | TGC | ATG | ACC | AGC | TGT | TGC | AGT | TGC | CTC | AAG | GGT | GCA | TGC | TCT | TGT | GGT | TCT | TGC | TGC | AAA | TTT | GAT | GAG | GAT | GAC | TCT | GAG | CCT | GTG | CTC | AAG | GGA | GTC | AAA | TTA | CAC | TAC | ACA | TAA |
KY417149_Bat_SARS_like_CoV_Rs4255 | TTC | TTT | TAT | GCC | TCG | GCC | TTG | TTA | CTG | CTC | AAG | ATG | G---CT | GTG | GGC | ATA | TTA | GCA | CTA | AAC | C-- | TCA | ACC | ATT | AAT | GGA | --T | AAA | TTT | TCT | TCT | TCG | CGT | AGG | GGT | GTC | TAT | TAT | AAT | GAT | GAC | ATT | TTT | CGA | TCA | GAT | GTT | TTA | CAT | CTT | ACT | CAG | GAT | TAT | TTT | CTA | CCA | TTT | GAC | ACC | AAT | CTA | ACG | CGT | TAT | TTG | TCT | TTT | AAC | A-- | -TG | GAT | TCT | GCA | ACA | AAG | GTT | TAC | TTT | GAT | AAT | CCA | ACA | TTA | CCA | TTT | GGT | GAC | GGC | ATT | TAT | TTT | GCA | GCC | ACT | GAA | AAA | TCT | AAT | GTT | GTT | AGA | GGC | TGG | ATT | TTT | GGT | TCC | ACT | ATG | GAT | AAC | ACC | ACG | CAA | TCT | GCC | ATT | ATA | GTC | AAT | AAT | TCC | ACG | CAT | ATT | ATT | ATA | CGT | GTG | TGT | TAT | TTT | AAT | TTA | TGT | AAA | GAA | CCC | ATG | TAT | GCC | ATC | TCG | AAT | GAG | --- | --- | --- | --- | CA- | --- | -G- | CAT | TAC | AAA | TCA | TGG | GTG | TAT | CAA | AAT | GCA | TAC | AAT | TGC | ACA | TAT | GAT | AGA | GTG | GGG | CAG | AGC | TTT | CAA | CTC | GAC | ACT | GCC | C---CT | CAG | ACT | GGA | AAT | TTT | AAG | GAC | TTA | CGT | GAG | TAT | GTC | TTT | AAA | AAT | AAG | GAT | GGG | TTT | CTA | AGT | GTT | TAT | AAT | GCT | TAT | TCA | CCT | ATT | GAC | ATA | CCA | AGG | GG------------T | CTT | CCT | GTT | GGT | TTT | TCG | GTG | TTG | AAA | CCA | ATT | CTT | AAA | CTC | CCT | ATA | GGT | ATA | AAT | ATT | ACC | TCT | TTT | AAG | GTA | GTT | ATG | TCC | ATG | TTT | AGC | AGA | ACC | ACT | TC- | --- | --- | --- | --- | --- | --T | AAT | TTC | CTA | CCT | GAA | GTT | GCT | GCT | TAT | TTT | GTT | GGT | AAC | TTA | AAA | TAT | AGT | ACC | TTC | ATG | CTT | AAT | TTT | AAT | GAG | AAT | GGG | ACT | ATT | ACT | GAT | GCC | ATT | GAT | TGT | GCC | CAA | AAT | CCC | CTA | TCT | GAA | TTA | AAA | TGC | ACC | ATT | AAA | AAT | TTT | AAT | GTC | AGT | AAA | GGA | ATC | TAT | CAG | ACA | TCT | AAC | TTC | AGA | GTG | TCA | CCA | ACT | CAT | GAA | GTT | ATT | AGG | TTC | CCT | AAC | ATT | ACA | AAC | CGC | TGT | CCT | TTT | GAC | AAA | GTT | TTT | AAT | GCT | AGT | CGC | TTT | CCC | AAT | GTT | TAT | GCT | TGG | GAA | AGA | ACA | AAA | ATT | TCT | GAT | TGT | GTT | GCT | GAT | TAC | ACT | GTT | CTC | TAC | AAC | TCA--- | ACT | TCA | TTT | TCA | ACT | TTT | AAA | TGT | TAT | GGA | GTT | TCT | CCC | TCT | AAG | TTG | ATT | GAT | TTG | TGC | TTT | ACA | AGT | GTG | TAT | GCT | GAT | ACA | TTC | TTG | ATA | AGG | TCT | TCA | GAA | GTA | AGG | CAA | GTT | GCA | CCA | GGT | GAA | ACT | GGT | GTT | ATT | GCT | GAC | TAT | AAC | TAC | AAA | CTG | CCT | GAT | GAC | TTT | ACA | GGC | TGT | GTC | ATA | GCT | TGG | AAC | ACT | GCT | AAA | CAA | GAT | CAG | GG- | --- | --- | --- | --- | --C | CAG | TAT | TAT | TAT | AGA | TCC | TCC | AGA | AAA | ACA | AAA | CTT | AAA | CCT | TTT | GAG | AGG | GAT | CTA | TCT | TCT | GAC | GA- | --A | AAT | GGT | GTA | CGT | ACT | CTT | AGT | AC- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --T | TAT | GAC | TTC | TAT | CCT | ACT | GTG | CCT | ATT | GAA | TAT | CAG | GCT | ACT | AGG | GTT | GTT | GTG | CTT | TCA | TTT | GAG | CTT | TTA | AAT | GCA | CCT | GCT | ACA | GTT | TGT | GGA | CCT | AAA | CTA | TCC | ACA | GGA | CTT | GTT | AAG | AAC | CAG | TGC | GTC | AAT | TTC | AAT | TTT | AAT | GGA | CTC | AAA | GGT | ACT | GGT | GTT | CTG | ACT | GAT | TCT | TCA | AAG | AGA | TTT | CAG | TCA | TTT | CAA | CAA | TTT | GGA | AGA | GAC | ACG | TCG | GAT | TTC | ACT | GAC | TCC | GTT | CGT | GAC | CCG | CAA | ACA | TTG | CAG | ATA | CTT | GAC | ATT | ACA | CCA | TGT | TCT | TTT | GGT | GGT | GTG | AGT | GTA | ATA | ACA | CCT | GGA | ACA | AAT | GCT | TCA | TCC | GAA | GTG | GCT | GTT | CTT | TAC | CAA | GAT | GTA | AAC | TGC | ACT | GAT | GTC | CCA | ACG | GCC | ATA | CGT | GCT | GAT | CAA | TTA | ACA | CCA | GCG | TGG | CGC | ATT | TAC | TCC | ACT | GGA | ATA | AAT | G------TT | TTT | CAA | ACA | CAA | GCG | GGC | TGT | CTT | ATT | GGG | GCT | GAA | CAT | GTC | AAT | GCT | TCC | TAT | GAG | TGT | GAC | ATC | CCT | ATT | GGT | GCT | GGC | ATT | TGT | GCT | AGC | TAC | CAT | ACA | GCC | TCT | ACT | T-- | --- | --- | --- | -TA | CGT | AGT | GTA | GGT | CAG | AAA | TCC | ATT | GTG | GCT | TAC | ACT | ATG | TCT | TTG | GGT | GCA | GAA | AAT | TCT | ATT | GCT | TAC | GCT | AAT | AAC | TCA | ATT | GCC | ATA | CCT | ACA | AAT | TTT | TCA | ATT | AGT | GTC | ACG | ACT | GAA | GTG | ATG | CCA | GTT | TCA | ATG | TCT | AAG | ACA | TCA | GTA | GAT | TGT | ACA | ATG | TAC | ATC | TGT | GGT | GAC | TCT | CAG | GAG | TGC | AGT | AAT | TTA | CTT | CTT | CAA | TAC | GGA | AGT | TTC | TGC | ACG | CAA | TTA | AAT | CGT | GCT | CTT | ACG | GGC | ATT | GCC | ATA | GAA | CAG | GAC | AAA | AAT | ACA | CAG | GAG | GTT | TTT | GCC | CAG | GTT | AAA | CAA | ATG | TAC | AAG | ACA | CCA | GCC | ATA | AAG | GAT | TTT | GGC | GGT | TTC | AAT | TTT | TCA | CAA | ATA | TTG | CCT | GAC | CCT | TCT | AAG | CCA | ACA | AAG | AGA | TCA | TTT | ATT | GAA | GAT | TTA | CTT | TTC | AAC | AAG | GTG | ACT | CTC | GCT | GAT | GCT | GGC | TTT | ATG | AAG | CAG | TAT | GGC | GAA | TGC | CTA | GGT | GAT | ATT | AAT | GCT | AGA | GAC | CTC | ATC | TGT | GCA | CAA | AAG | TTC | AAT | GGC | CTT | ACT | GTC | TTG | CCA | CCT | TTA | CTC | ACG | GAT | GAC | ATG | ATT | GCT | GCA | TAC | ACT | GCT | GCC | CTT | GTC | AGT | GGT | ACT | GCT | ACT | GCT | GGC | TGG | ACC | TTC | GGT | GCT | GGT | GCT | GCT | CTT | CAA | ATA | CCT | TTT | GCT | ATG | CAG | ATG | GCA | TAT | AGG | TTC | AAT | GGC | ATT | GGA | GTT | ACT | CAA | AAC | GTT | CTC | TAT | GAG | AAT | CAA | AAA | CAG | ATC | GCC | AAT | CAA | TTC | AAC | AAG | GCA | ATC | AGT | CAA | ATT | CAA | GAA | TCA | CTT | ACA | ACA | ACA | TCA | ACT | GCG | TTG | GGC | AAG | CTG | CAA | GAC | GTT | GTC | AAC | CAG | AAT | GCT | CAA | GCA | TTG | AAC | ACG | CTT | GTT | AAA | CAG | CTT | AGC | TCC | AAT | TTT | GGT | GCA | ATT | TCA | AGT | GTG | CTA | AAT | GAC | ATT | CTT | TCA | CGA | CTA | GAT | AAA | GTC | GAG | GCA | GAG | GTG | CAA | ATT | GAC | AGG | TTG | ATC | ACA | GGC | AGA | TTG | CAG | AGC | CTT | CAA | ACC | TAT | GTA | ACA | CAA | CAA | CTA | ATC | AGA | GCT | GCT | GAA | ATC | AGA | GCT | TCT | GCT | AAT | CTT | GCT | GCT | ACT | AAA | ATG | TCT | GAG | TGT | GTT | CTT | GGA | CAA | TCA | AAA | AGA | GTT | GAC | TTC | TGT | GGA | AGA | GGC | TAT | CAT | CTT | ATG | TCT | TTT | CCT | CAG | GCT | GCT | CCG | CAT | GGT | GTT | GTT | TTC | TTA | CAT | GTC | ACA | TAT | GTG | CCA | TCG | CAG | GAG | AAA | AAC | TTC | ACC | ACA | GCT | CCA | GCA | ATT | TGT | CAT | GAA | GGC | AAG | GCA | TAC | TTC | CCG | CGT | GAA | GGT | GTT | TTT | GTA | TCT | AAT | GGC | ACT | TCT | TGG | TTC | ATT | ACA | CAG | AGG | AAT | TTT | TAC | TCA | CCA | CAA | ATA | ATC | ACA | ACA | GAT | AAT | ACA | TTT | GTT | GCT | GGA | AAC | TGT | GAT | GTC | GTA | ATT | GGC | ATC | ATT | AAC | AAC | ACA | GTC | TAT | GAT | CCT | CTG | CAA | CCT | GAG | CTT | GAC | TCA | TTT | AAA | GAA | GAG | CTG | GAC | AAG | TAC | TTC | AAA | AAT | CAC | ACA | TCA | CCT | GAT | GTT | GAT | CTT | GGC | GAC | ATT | TCA | GGC | ATT | AAT | GCT | TCT | GTC | GTC | AAT | ATT | CAA | AAG | GAA | ATT | GAC | CGC | CTC | AAT | GAG | GTT | GCC | AAA | AAT | CTA | AAC | GAA | TCG | CTC | ATT | GAT | CTT | CAA | GAA | CTT | GGT | AAA | TAT | GAG | CAA | TAC | ATC | AAA | TGG | CCT | TGG | TAC | GTT | TGG | CTC | GGC | TTC | ATT | GCT | GGA | CTG | ATT | GCT | ATC | GTC | ATG | GCC | ACT | ATA | CTG | CTT | TGT | TGC | ATG | ACC | AGC | TGT | TGC | AGT | TGC | CTC | AAG | GGT | GCA | TGC | TCT | TGT | GGT | TCT | TGC | TGC | AAA | TTT | GAT | GAG | GAC | GAC | TCT | GAG | CCA | GTG | CTC | AAA | GGA | GTC | AAA | TTA | CAC | TAC | ACA | TAA |
MK211378_CoV_BtRs_BetaCoV_YN2018D | TTC | TTT | TAT | GCC | TCG | GCC | TTG | TTA | CTG | CTC | AAG | ATG | G---CT | GTG | GGC | ATA | TTA | GCA | CTA | AAC | C-- | TCA | ACC | ATT | ATT | GGA | --T | AAA | TTT | TCT | TCT | TCG | CGT | AGG | GGT | GTC | TAT | TAT | AAT | GAT | GAC | ATT | TTT | CGT | TCA | GAT | GTT | TTA | CAT | CTT | ACT | CAG | GAT | TAT | TTT | CTA | CCA | TTT | GAC | ACC | AAT | CTA | ACG | CGT | TAT | TTG | TCT | TTT | AAC | A-- | -TG | GAT | TCT | GCA | ACA | AAG | GTT | TAC | TTT | GAT | AAT | CCA | ACA | TTA | CCA | TTT | GGT | GAC | GGC | ATT | TAT | TTT | GCA | GCC | ACT | GAA | AAA | TCT | AAT | GTT | GTT | AGA | GGC | TGG | ATT | TTT | GGT | TCC | ACT | ATG | GAT | AAC | ACC | ACG | CAA | TCT | GCC | ATT | ATA | GTC | AAT | AAT | TCC | ACG | CAT | ATT | ATT | ATA | CGT | GTG | TGT | TAT | TTT | AAT | TTA | TGT | AAA | GAA | CCC | ATG | TAT | GCT | ATC | TCG | AAT | GAG | --- | --- | --- | --- | CA- | --- | -G- | CAT | TAC | AAA | TCA | TGG | GTG | TAT | CAA | AAT | GCA | TAT | AAT | TGC | ACA | TAT | GAT | AGA | GTG | GAG | CAG | AGC | TTT | CAA | CTC | GAC | ACT | GCC | C---CT | CAG | ACT | GGA | AAT | TTT | AAG | GAC | TTA | CGT | GAG | TAT | GTC | TTT | AAA | AAT | AAG | GAT | GGG | TTT | CTA | AGT | GTT | TAT | AAT | GCT | TAT | TCA | CCT | ATT | GAC | ATA | CCA | AGG | GG------------T | CTT | CCT | GTT | GGT | TTT | TCG | GTG | TTG | AAA | CCA | ATT | CTT | AAA | CTC | CCT | ATA | GGT | ATA | AAT | ATT | ACC | TCT | TTT | AAG | GTA | GTT | ATG | TCC | ATG | TTT | AGC | AGA | ACA | ACT | TC- | --- | --- | --- | --- | --- | --T | AAT | TTC | CTA | CCT | GAA | GTT | GCT | GCT | TAT | TTT | GTT | GGT | AAC | TTA | AAA | TAT | AGT | ACC | TTC | ATG | CTT | AAT | TTT | AAT | GAG | AAT | GGG | ACT | ATT | ACT | GAT | GCC | ATT | GAT | TGT | GCC | CAA | AAT | CCC | CTA | TCT | GAA | TTA | AAA | TGC | ACC | ATT | AAA | AAT | TTT | AAT | GTC | AGT | AAA | GGA | ATC | TAT | CAG | ACA | TCT | AAC | TTC | AGA | GTA | TCA | CCA | ACT | CAT | GAA | GTT | ATT | AGG | TTC | CCT | AAC | ATT | ACA | AAC | CGT | TGT | CCT | TTC | GAC | AAA | GTT | TTT | AAT | GCT | AGT | CGC | TTT | CCC | AAT | GTT | TAT | GCT | TGG | GAA | AGA | ACA | AAA | ATT | TCT | GAT | TGT | GTT | GCT | GAT | TAC | ACT | GTT | CTC | TAC | AAC | TCA--- | ACT | TCA | TTT | TCA | ACT | TTT | AAA | TGT | TAT | GGA | GTC | TCT | CCC | TCT | AAG | TTG | ATT | GAT | TTG | TGC | TTT | ACA | AGT | GTG | TAT | GCT | GAT | ACA | TTC | TTG | ATA | AGA | TCT | TCA | GAA | GTA | AGG | CAA | GTT | GCA | CCA | GGT | GAA | ACT | GGT | GTT | ATT | GCT | GAC | TAT | AAC | TAC | AAA | CTG | CCT | GAT | GAC | TTT | ACA | GGC | TGC | GTC | ATA | GCT | TGG | AAC | ACT | GCT | AAA | CAA | GAT | CAG | GG- | --- | --- | --- | --- | --C | CAG | TAT | TAT | TAT | AGA | TCC | TCC | CGA | AAA | ACA | AAA | CTT | AAA | CCT | TTT | GAG | AGG | GAT | CTA | ACT | TCT | GAC | GA- | --A | AAT | GGT | GTA | CGT | ACT | CTT | AGT | AC- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --T | TAT | GAC | TTC | TAT | CCT | AAT | GTG | CCT | ATT | GAA | TAT | CAG | GCT | ACT | AGG | GTT | GTT | GTG | CTT | TCA | TTT | GAA | CTT | CTA | AAT | GCA | CCT | GCT | ACA | GTT | TGT | GGA | CCT | AAA | TTA | TCC | ACA | GGA | CTT | GTT | AAG | AAC | CAG | TGT | GTT | AAT | TTT | AAC | TTC | AAT | GGA | CTC | AGG | GGC | ACT | GGT | GTT | TTG | ACT | GAC | TCA | TCA | AAG | AGG | TTT | CAG | TCT | TTT | CAA | CAA | TTT | GGT | CGT | GAC | ACT | TCT | GAC | TTT | ACG | GAT | TCA | GTG | CGT | GAT | CCA | CAA | ACA | CTA | GAA | ATA | CTT | GAC | ATT | ACA | CCA | TGT | TCT | TTT | GGT | GGT | GTG | AGT | GTA | ATA | ACA | CCT | GGA | ACA | AAT | GCT | TCA | TCT | GAA | GTG | GCT | GTT | CTT | TAC | CAA | GAT | GTA | AAT | TGC | ACT | GAT | GTC | CCA | ACG | GCC | ATA | CGT | GCT | GAT | CAA | CTA | ACA | CCA | GCT | TGG | CGC | GTT | TAC | TCC | ACT | GGA | ATA | AAT | G------TT | TTT | CAA | ACA | CAA | GCT | GGC | TGT | CTT | ATT | GGG | GCT | GAA | CAT | GTC | AAT | GCT | TCT | TAC | GAG | TGT | GAC | ATC | CCT | ATT | GGT | GCT | GGC | ATT | TGT | GCT | AGC | TAC | CAT | ACA | GCC | TCT | ACT | T-- | --- | --- | --- | -TA | CGT | AGT | GTA | GGT | CAG | AAA | TCC | ATT | GTG | GCT | TAC | ACT | ATG | TCT | TTG | GGT | GCA | GAA | AAT | TCC | ATT | GCT | TAC | GCT | AAT | AAC | TCA | ATT | GCC | ATA | CCT | ACA | AAT | TTT | TCA | ATT | AGT | GTC | ACG | ACT | GAA | GTG | ATG | CCA | GTT | TCA | ATG | TCT | AAG | ACA | TCA | GTA | GAT | TGT | ACA | ATG | TAC | ATC | TGT | GGT | GAC | TCT | CAG | GAG | TGC | AGT | AAT | TTA | CTT | CTT | CAA | TAC | GGA | AGT | TTC | TGC | ACG | CAA | TTG | AAT | CGT | GCT | CTT | ACG | GGC | ATT | GCC | ATA | GAA | CAG | GAC | AAA | AAT | ACA | CAG | GAG | GTT | TTT | GCC | CAG | GTT | AAA | CAA | ATG | TAC | AAG | ACA | CCA | GCC | ATA | AAG | GAT | TTT | GGC | GGT | TTC | AAT | TTT | TCA | CAA | ATA | TTG | CCT | GAC | CCT | TCT | AAG | CCA | ACA | AAG | AGA | TCA | TTT | ATT | GAA | GAT | TTA | CTT | TTC | AAC | AAG | GTG | ACT | CTC | GCT | GAT | GCT | GGC | TTT | ATG | AAG | CAG | TAT | GGC | GAA | TGC | CTA | GGT | GAT | ATT | AAT | GCT | AGA | GAC | CTC | ATC | TGT | GCA | CAA | AAG | TTC | AAT | GGC | CTT | ACT | GTC | CTG | CCA | CCT | TTA | CTC | ACG | GAT | GAC | ATG | ATC | GCT | GCG | TAC | ACT | GCT | GCC | CTT | GTC | AGT | GGT | ACT | GCT | ACT | GCT | GGC | TGG | ACA | TTC | GGT | GCT | GGT | GCT | GCT | CTT | CAA | ATA | CCT | TTT | GCT | ATG | CAA | ATG | GCA | TAT | AGG | TTC | AAT | GGC | ATT | GGA | GTT | ACT | CAA | AAT | GTT | CTC | TAT | GAG | AAT | CAA | AAA | CAG | ATC | GCC | AAT | CAA | TTC | AAC | AAG | GCG | ATC | AGT | CAA | ATT | CAA | GAA | TCA | CTT | ACA | ACA | ACA | TCA | ACT | GCG | TTG | GGC | AAG | CTG | CAA | GAC | GTT | GTC | AAC | CAG | AAC | GCT | CAA | GCA | TTG | AAC | ACA | CTT | GTT | AAA | CAG | CTT | AGC | TCC | AAT | TTT | GGT | GCA | ATT | TCA | AGT | GTG | CTA | AAT | GAC | ATT | CTT | TCA | CGA | CTA | GAC | AAA | GTC | GAG | GCA | GAG | GTG | CAA | ATT | GAC | AGG | TTG | ATC | ACA | GGC | AGA | TTG | CAG | AGC | CTT | CAA | ACC | TAT | GTA | ACA | CAA | CAA | CTA | ATT | AGA | GCT | GCT | GAA | ATC | AGA | GCT | TCT | GCT | AAT | CTT | GCT | GCT | ACT | AAA | ATG | TCT | GAG | TGT | GTT | CTT | GGA | CAA | TCA | AAA | AGA | GTT | GAC | TTC | TGT | GGA | AGA | GGC | TAT | CAT | CTT | ATG | TCT | TTT | CCT | CAG | GCT | GCT | CCG | CAT | GGT | GTT | GTT | TTC | TTA | CAT | GTC | ACA | TAT | GTG | CCA | TCG | CAG | GAG | AAA | AAC | TTC | ACC | ACA | GCT | CCG | GCA | ATT | TGT | CAT | GAA | GGC | AAA | GCA | TAC | TTC | CCG | CGT | GAA | GGT | GTT | TTT | GTA | TCT | AAT | GGC | ACT | TCT | TGG | TTC | ATT | ACA | CAG | AGG | AAT | TTT | TAC | TCA | CCA | CAA | ATA | ATC | ACA | ACA | GAT | AAT | ACA | TTT | GTT | GCT | GGA | AGC | TGT | GAT | GTC | GTA | ATT | GGC | ATC | ATT | AAC | AAC | ACA | GTC | TAT | GAT | CCT | CTG | CAA | CCT | GAG | CTT | GAC | TCA | TTC | AAG | GAA | GAG | CTG | GAC | AAG | TAC | TTC | AAA | AAT | CAT | ACA | TCA | CCT | GAT | GTT | GAT | CTC | GGC | GAC | ATT | TCA | GGC | ATT | AAT | GCT | TCT | GTC | GTC | AAC | ATT | CAG | AAA | GAA | ATT | GAC | CGC | CTC | AAT | GAG | GTT | GCC | AAA | AAT | CTA | AAT | GAA | TCG | CTC | ATT | GAC | CTC | CAA | GAA | CTT | GGT | AAA | TAT | GAG | CAA | TAC | ATC | AAA | TGG | CCC | TGG | TAC | GTT | TGG | CTC | GGC | TTC | ATT | GCT | GGA | CTG | ATT | GCT | ATC | GTT | ATG | GCC | ACT | ATA | CTG | CTT | TGT | TGC | ATG | ACC | AGC | TGT | TGC | AGT | TGC | CTC | AAG | GGT | GCA | TGC | TCT | TGT | GGT | TCT | TGC | TGC | AAA | TTT | GAT | GAG | GAC | GAC | TCT | GAG | CCA | GTG | CTC | AAA | GGA | GTC | AAA | TTA | CAC | TAC | ACA | TAA |
FJ588686_Bat_SARS_CoV_Rs672_2006 | TTC | TTT | TAT | GCC | TCG | GCC | TTG | TTA | CTG | CTC | AAG | ATG | G---CT | GTG | GGC | ATA | TTA | GCA | CTA | AAC | C-- | TCA | ACC | ATT | AAT | GGA | --T | AAA | TTT | TCT | TCT | TCG | CGT | AGG | GGT | GTC | TAT | TAT | AAT | GAT | GAC | ATT | TTT | CGA | TCA | GAT | GTT | TTA | CAT | CTT | ACT | CAG | GAT | TAT | TTT | CTA | CCA | TTT | GAC | ACC | AAT | CTA | ACG | CGT | TAT | TTG | TCT | TTT | AAC | A-- | -TG | GAT | TCT | GCA | ACA | AAG | GTT | TAC | TTT | GAT | AAT | CCA | ACA | TTA | CCA | TTT | GGT | GAC | GGC | ATT | TAT | TTT | GCA | GCC | ACT | GAA | AAA | TCT | AAT | GTT | GTT | AGA | GGC | TGG | ATT | TTT | GGT | TCC | ACT | ATG | GAT | AAC | ACC | ACG | CAA | TCT | GCC | ATT | ATA | GTC | AAT | AAT | TCC | ACG | CAT | ATT | ATT | ATA | CGT | GTG | TGT | TAT | TTT | AAT | TTA | TGT | AAA | GAA | CCC | ATG | TAT | GCC | ATC | TCG | AAT | GAG | --- | --- | --- | --- | CA- | --- | -G- | CAT | TAC | AAA | TCA | TGG | GTG | TAT | CAA | AAT | GCA | TAT | AAT | TGC | ACA | TAT | GAT | AGA | GTG | GAG | CAG | AGC | TTT | CAA | CTC | GAC | ACT | GCC | C---CT | CAG | ACT | GGA | AAT | TTT | AAG | GAC | TTA | CGT | GAG | TAT | GTC | TTT | AAA | AAT | AAG | GAT | GGG | TTT | CTA | AGT | GTT | TAT | AAT | GCT | TAT | TCA | CCT | ATT | GAC | ATA | CCA | AGG | GG------------T | CTT | CCT | GTT | GGT | TTT | TCG | GTG | TTG | AAA | CCA | ATT | CTT | AAA | CTC | CCT | ATA | AGT | ATA | AAT | ATT | ACC | TCT | TTT | AAG | GTA | GTT | ATG | TCC | ATG | TTT | AGC | AGA | ACC | ACT | TC- | --- | --- | --- | --- | --- | --T | AAT | TTC | CTA | CCT | GAA | GTT | GCT | GCT | TAT | TTT | GTT | GGT | AAC | TTA | AAA | TAT | AGT | ACC | TTC | ATG | CTT | AAT | TTT | AAT | GAG | AAT | GGG | ACT | ATT | ACT | GAT | GCC | ATT | GAT | TGT | GCC | CAA | AAT | CCC | CTA | TCT | GAA | TTA | AAA | TGC | ACC | ATT | AAA | AAT | TTT | AAT | GTC | AGT | AAA | GGA | ATC | TAT | CAG | ACA | TCT | AAC | TTC | AGA | GTA | TCA | CCA | ACT | CAT | GAA | GTT | ATT | AGG | TTC | CCT | AAC | ATT | ACA | AAC | CGC | TGT | CCT | TTC | GAC | AAA | GTT | TTT | AAT | GCT | AGT | CGC | TTT | CCC | AAT | GTT | TAT | GCT | TGG | GAA | AGA | ACA | AAA | ATT | TCT | GAT | TGT | GTT | GCT | GAT | TAC | ACT | GTT | CTC | TAC | AAC | TCA--- | ACT | TCA | TTT | TCA | ACT | TTT | AAA | TGT | TAT | GGA | GTT | TCT | CCC | TCT | AAG | TTG | ATT | GAC | TTG | TGC | TTT | ACA | AGT | GTG | TAT | GCT | GAT | ACA | TTC | TTG | ATA | AGA | TCT | TCA | GAA | GTA | AGG | CAA | GTT | GCA | CCA | GGT | GAA | ACT | GGT | GTT | ATT | GCT | GAC | TAT | AAC | TAC | AAA | CTG | CCT | GAT | GAC | TTT | ACA | GGC | TGT | GTC | ATA | GCT | TGG | AAC | ACT | GCT | AAA | CAA | GAT | CAG | GG- | --- | --- | --- | --- | --C | CAG | TAT | TAT | TAT | AGA | TCC | TCC | AGA | AAA | ACA | AAA | CTT | AAA | CCT | TTT | GAG | AGG | GAT | CTA | ACT | TCT | GAC | GA- | --A | AAT | GGT | GTA | CGT | ACT | CTT | AGT | AC- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --T | TAT | GAC | TTC | TAT | CCT | AAT | GTG | CCT | ATT | GAA | TAT | CAG | GCT | ACT | AGG | GTT | GTT | GTG | CTT | TCA | TTC | GAG | CTT | CTA | AAT | GCA | CCT | GCT | ACA | GTT | TGT | GGA | CCT | AAA | TTA | TCC | ACA | GGA | CTT | GTT | AAG | AAC | CAG | TGT | GTC | AAT | TTC | AAT | TTT | AAT | GGA | CTC | AAA | GGT | ACT | GGT | GTT | CTG | ACT | GAT | TCT | TCA | AAG | AGA | TTT | CAG | TCA | TTT | CAA | CAA | TTT | GGA | AGA | GAC | ACG | TCG | GAT | TTC | ACT | GAT | TCC | GTT | CGT | GAC | CCG | CAA | ACA | TTG | CAG | ATA | CTT | GAC | ATT | ACA | CCA | TGT | TCT | TTT | GGT | GGT | GTG | AGT | GTA | ATA | ACA | CCT | GGA | ACA | AAT | GCT | TCA | TCT | GAA | GTG | GCT | GTT | CTT | TAC | CAA | GAT | GTA | AAC | TGC | ACC | GAT | GTC | CCA | ACA | GCC | ATA | CGT | GCA | GAC | CAA | TTA | ACA | CCA | GCT | TGG | CGC | GTT | TAC | TCA | ACC | GGA | GTA | AAT | G------TG | TTT | CAA | ACA | CAA | GCT | GGC | TGT | CTT | ATT | GGA | GCT | GAA | CAT | GTT | AAC | GCT | TCG | TAT | GAG | TGT | GAC | ATT | CCT | ATT | GGT | GCT | GGC | ATT | TGT | GCT | AGC | TAC | CAT | ACA | GCT | TCT | ACT | C-- | --- | --- | --- | -TA | CGT | AGT | GTA | GGT | CAG | AAA | TCC | ATT | GTG | GCT | TAC | ACT | ATG | TCT | TTG | GGT | GCA | GAA | AAT | TCT | ATT | GCT | TAT | GCT | AAT | AAT | TCG | ATT | GCC | ATA | CCT | ACA | AAT | TTT | TCA | ATC | AGT | GTC | ACA | ACT | GAA | GTG | ATG | CCT | GTT | TCG | ATG | GCT | AAG | ACA | TCA | GTA | GAT | TGT | ACA | ATG | TAC | ATC | TGT | GGT | GAT | TCT | CAG | GAG | TGC | AGT | AAC | TTA | CTT | CTC | CAG | TAT | GGA | AGT | TTC | TGC | ACG | CAA | TTA | AAT | CGT | GCT | CTC | ACG | GGC | GTT | GCC | TTA | GAA | CAG | GAC | AAA | AAT | ACA | CAG | GAG | GTT | TTT | GCC | CAG | GTT | AAA | CAA | ATG | TAC | AAG | ACA | CCA | GCC | ATA | AAG | GAT | TTT | GGC | GGT | TTC | AAT | TTT | TCA | CAA | ATA | TTG | CCT | GAT | CCT | TCA | AAG | CCA | ACA | AAG | AGA | TCA | TTT | ATT | GAA | GAT | CTA | CTC | TTC | AAC | AAG | GTG | ACT | CTT | GCT | GAT | GCT | GGC | TTT | ATG | AAA | CAA | TAT | GGC | GAA | TGC | CTA | GGC | GAT | ATT | AGT | GCT | AGA | GAC | CTC | ATT | TGT | GCT | CAG | AAG | TTC | AAC | GGA | CTT | ACT | GTC | CTA | CCA | CCA | TTG | CTC | ACA | GAT | GAA | ATG | ATT | GCT | GCG | TAC | ACT | GCT | GCC | CTT | GTC | AGT | GGT | ACT | GCT | ACT | GCT | GGC | TGG | ACA | TTC | GGT | GCT | GGT | GCT | GCT | CTT | CAA | ATA | CCT | TTT | GCT | ATG | CAA | ATG | GCA | TAT | AGG | TTC | AAT | GGC | ATT | GGA | GTT | ACT | CAA | AAT | GTT | CTC | TAT | GAG | AAT | CAA | AAG | CAG | ATC | GCC | AAT | CAA | TTC | AAC | AAG | GCG | ATC | AGT | CAA | ATT | CAA | GAA | TCA | CTT | ACA | ACA | ACA | TCA | ACT | GCA | TTG | GGC | AAG | CTG | CAA | GAC | GTT | GTC | AAC | CAG | AAC | GCT | CAA | GCA | TTG | AAC | ACA | CTT | GTT | AAA | CAG | CTT | AGC | TCC | AAT | TTT | GGT | GCA | ATT | TCA | AGT | GTG | CTA | AAT | GAC | ATT | CTT | TCA | CGA | CTA | GAC | AAA | GTC | GAG | GCA | GAG | GTG | CAA | ATT | GAC | AGG | TTG | ATC | ACA | GGC | AGA | TTG | CAG | AGC | CTT | CAA | ACC | TAT | GTA | ACA | CAA | CAA | CTA | ATC | AGA | GCT | GCT | GAA | ATC | AGA | GCT | TCT | GCT | AAT | CTT | GCT | GCT | ACT | AAA | ATG | TCT | GAG | TGT | GTT | CCT | GGA | CAA | TCA | AAA | AGA | GTT | GAC | TTC | TGT | GGA | AGA | GGC | TAT | CAT | CTT | ATG | TCT | TTT | CCT | CAG | GCC | GCT | CCG | CAT | GGT | GTT | GTT | TTC | TTA | CAT | GTC | ACA | TAT | GTG | CCA | TCG | CAG | GAG | AAA | AAC | TTC | ACC | ACA | GCT | CCA | GCA | ATT | TGT | CAT | GAA | GGC | AAA | GCA | TAC | TTC | CCG | CGT | GAA | GGT | GTT | TTT | GTA | TCT | AAT | GGC | ACT | TCT | TGG | TTC | ATT | ACA | CAG | AGG | AAT | TTT | TAC | TCA | CCA | CAA | ATA | ATC | ACA | ACA | GAT | AAT | ACA | TTT | GTT | GCT | GGA | AAC | TGT | GAT | GTC | GTA | ATT | GGC | ATC | ATT | AAC | AAC | ACA | GTC | TAT | GAT | CCT | CTG | CAA | CCT | GAG | CTT | GAC | TCA | TTT | AAA | GAA | GAG | CTG | GAC | AAG | TAC | TTC | AAA | AAT | CAC | ACA | TCA | CCT | GAT | GTT | GAT | CTT | GGC | GAC | ATT | TCA | GGC | ATT | AAT | GCT | TCT | GTC | GTC | AAT | ATT | CAA | AAA | GAA | ATT | GAC | CGC | CTC | AAT | GAG | GTT | GCC | AAA | AAT | CTA | AAT | GAA | TCG | CTC | ATT | GAC | CTT | CAA | GAA | CTT | GGT | AAG | TAT | GAG | CAA | TAC | ATC | AAA | TGG | CCT | TGG | TAC | GTT | TGG | CTC | GGC | TTC | ATT | GCT | GGA | CTG | ATT | GCT | ATC | GTC | ATG | GCC | ACT | ATA | CTG | CTT | TGT | TGC | ATG | ACC | AGC | TGT | TGC | AGT | TGC | CTC | AAG | GGT | GCA | TGC | TCT | TGT | GGT | TCT | TGC | TGC | AAA | TTT | GAT | GAG | GAT | GAC | TCT | GAG | CCT | GTG | CTC | AAG | GGA | GTC | AAA | TTA | CAC | TAC | ACA | TAA |
MK211377_CoV_BtRs_BetaCoV_YN2018C | TTG | CTT | TTC | TAG | TTA | CGC | TAG | TTA | AAG | CAC | AGG | AAG | G---AT | GCG | GCA | TTA | TCA | GCA | AAA | AAC | C-- | GCA | GCC | AAA | AAT | GGC | --A | CAA | GTT | TCC | TCT | TCC | CGC | CAA | GGT | GTA | TAC | TAT | AAT | GAT | GAC | ATT | TTT | CGT | TCT | GAT | GTA | CTA | CAC | CTC | ACT | CAG | GAT | TAC | TTC | CTG | CCC | TTT | GAT | TCA | AAT | TTA | ACA | CAG | TAC | TTT | TCT | CTT | AAC | G-- | -TT | GAT | TCA | GAT | AGG | TAC | ACC | TAT | TTT | GAC | AAT | CCC | ATT | TTA | GAC | TTC | GGT | GAC | GGC | GTT | TAT | TTC | GCT | GCT | TCT | GAA | AAG | TCT | AAT | GTA | ATC | AGA | GGC | TGG | ATT | TTT | GGT | TCC | ACT | TTT | GAT | AAC | ACC | ACT | CAG | TCA | GCT | GTC | ATA | GTT | AAC | AAT | TCC | ACA | CAC | ATT | ATC | ATA | CGT | GTG | TGC | AAT | TTT | AAC | TTA | TGT | AAA | GAA | CCC | ATG | TAC | ACA | GTG | TCT | CGT | GGC | --- | --- | --- | --- | AC- | --- | -A- | CAA | CAA | TCA | TCG | TGG | GTC | TAT | CAG | AGT | GCT | TTT | AAT | TGC | ACA | TAT | GAT | AGA | GTA | GAG | AGA | AGT | TTT | CAG | CTC | GAT | ACT | GCT | C---CT | AAA | ACT | GGA | AAT | TTT | AAA | GAC | CTA | CGC | GAG | TAT | GTC | TTT | AAG | AAT | CGT | GAT | GGT | TTT | CTT | AGT | GTT | TAC | CAA | ACT | TAT | ACG | GCT | GTT | AAT | TTA | CCT | AGA | GG------------A | TTA | CCT | ATT | GGG | TTC | TCA | GTT | TTG | AGG | CCA | ATC | CTC | AAA | CTG | CCC | TTT | GGA | ATT | AAC | ATT | ACA | TCT | TAT | AGA | GTT | GTT | ATG | GCT | ATG | TTT | AGC | CAA | ACT | ACT | TC- | --- | --- | --- | --- | --- | --T | AAT | TTC | TTA | CCA | GAA | AGT | GCT | GCT | TAT | TAT | GTT | GGT | AAT | CTA | AAG | TAT | ACC | ACC | TTT | ATG | CTT | AGG | TTT | AAT | GAA | AAT | GGG | ACT | ATC | ACT | GAT | GCT | ATT | GAT | TGC | GCC | CAA | AAT | CCA | CTT | GCT | GAA | TTA | AAA | TGC | ACC | ATT | AAA | AAT | TTT | AAT | GTC | AGT | AAA | GGA | ATC | TAC | CAA | ACA | TCT | AAC | TTC | AGA | GTT | TCA | CCA | ACT | CAA | GAA | GTT | GTT | AGG | TTC | CCC | AAC | ATT | ACA | AAC | CGT | TGT | CCT | TTT | GAC | AAA | GTT | TTT | AAT | GCT | ACT | CGC | TTT | CCC | AGT | GTT | TAT | GCG | TGG | GAG | CGA | ACA | AAA | ATT | TCT | GAT | TGT | GTT | GCT | GAT | TAC | ACT | GTT | CTC | TAC | AAC | TCC--- | ACT | TCC | TTC | TCA | ACT | TTC | AAA | TGT | TAT | GGA | GTT | TCT | CCC | TCT | AAG | TTG | ATT | GAT | TTG | TGC | TTT | ACA | AGT | GTG | TAT | GCT | GAT | ACA | TTC | TTG | ATA | AGA | TCT | TCA | GAA | GTA | AGG | CAA | GTT | GCA | CCA | GGT | GAA | ACT | GGT | GTT | ATT | GCT | GAC | TAT | AAC | TAT | AAA | TTG | CCT | GAC | GAC | TTC | ACA | GGC | TGT | GTT | ATT | GCC | TGG | AAT | ACT | GCT | CAG | CAA | GAT | AAG | GG- | --- | --- | --- | --- | --T | CAA | TAT | TAT | TAT | AGA | TCC | TCT | AGA | AAG | ACA | AAA | CTT | AAA | CCT | TTT | GAG | AGG | GAC | CTA | TCT | TCA | GAC | GA- | --A | AAT | GGT | GTA | CGT | ACT | CTT | AGT | AC- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --T | TAT | GAC | TTC | TAT | CCT | ACT | GTG | CCT | ATT | GAA | TAT | CAG | GCT | ACT | AGG | GTT | GTT | GTG | CTT | TCA | TTT | GAG | CTT | TTA | AAT | GCA | CCT | GCT | ACA | GTT | TGT | GGA | CCT | AAA | CTA | TCC | ACG | GGA | CTT | GTT | AAG | AAC | CAG | TGT | GTC | AAT | TTC | AAC | TTT | AAT | GGA | CTC | AAA | GGT | ACT | GGC | GTT | CTG | ACT | GAT | TCT | TCA | AAG | AGA | TTT | CAG | TCA | TTC | CAA | CAA | TTT | GGA | AGA | GAC | ACG | TCG | GAT | TTC | ACT | GAT | TCC | GTT | CGT | GAC | CCG | CAA | ACA | TTG | CAA | GTA | CTT | GAC | ATC | ACA | CCA | TGT | TCT | TTT | GGT | GGT | GTG | AGT | GTA | ATA | ACG | CCG | GGA | ACA | AAT | GCT | TCA | TCC | GAA | GTA | GCT | GTT | CTT | TAC | CAA | GAT | GTA | AAT | TGC | ACT | GAT | GTC | CCA | ACT | GCC | ATA | CGT | GCA | GAC | CAA | TTA | ACA | CCA | GCT | TGG | CGC | GTT | TAC | TCT | ACT | GGA | GTA | AAT | G------TG | TTT | CAA | ACA | CAA | GCT | GGC | TGT | CTT | ATT | GGA | GCT | GAA | CAT | GTT | AAC | GCT | TCG | TAT | GAG | TGT | GAC | ATT | CCT | ATT | GGT | GCT | GGC | ATT | TGT | GCT | AGC | TAC | CAT | ACA | GCT | TCT | ACT | C-- | --- | --- | --- | -TA | CGT | AGT | GTG | GGT | CAG | AAA | TCC | ATT | GTG | GCT | TAC | ACT | ATG | TCT | TTG | GGT | GCA | GAA | AAT | TCT | ATT | GCT | TAT | GCT | AAT | AAT | TCA | ATT | GCC | ATA | CCT | ACA | AAT | TTT | TCA | ATC | AGT | GTC | ACA | ACT | GAA | GTG | ATG | CCT | GTT | TCA | ATG | GCT | AAG | ACA | TCA | GTA | GAT | TGT | ACA | ATG | TAC | ATC | TGT | GGT | GAT | TCT | CAG | GAG | TGC | AGT | AAC | TTA | CTT | CTC | CAG | TAT | GGA | AGT | TTC | TGC | ACG | CAG | TTA | AAT | CGT | GCT | CTC | ACG | GGC | GTT | GCC | TTA | GAA | CAG | GAC | AAA | AAT | ACA | CAG | GAG | GTT | TTT | GCC | CAG | GTT | AAA | CAA | ATG | TAC | AAG | ACA | CCA | GCC | ATA | AAG | GAT | TTT | GGC | GGT | TTC | AAT | TTT | TCA | CAA | ATA | TTG | CCT | GAT | CCT | TCA | AAG | CCA | ACA | AAG | AGA | TCA | TTT | ATT | GAA | GAC | TTA | CTC | TTC | AAC | AAG | GTG | ACT | CTC | GCT | GAT | GCT | GGC | TTT | ATG | AAG | CAA | TAT | GGC | GAA | TGC | CTA | GGT | GAT | ATT | AAT | GCT | AGA | GAC | CTC | ATC | TGT | GCA | CAA | AAG | TTC | AAT | GGC | CTT | ACT | GTC | CTT | CCA | CCT | TTA | CTC | ACA | GAC | GAC | ATG | ATT | GCT | GCA | TAC | ACT | GCT | GCC | CTT | GTC | AGT | GGT | ACT | GCT | ACT | GCT | GGC | TGG | ACG | TTC | GGT | GCT | GGT | GCT | GCT | CTT | CAA | ATA | CCT | TTT | GCT | ATG | CAG | ATG | GCA | TAT | AGG | TTT | AAT | GGC | ATT | GGA | GTT | ACT | CAA | AAT | GTT | CTC | TAT | GAG | AAT | CAA | AAA | CAG | ATC | GCC | AAC | CAA | TTC | AAC | AAG | GCA | ATC | AGT | CAA | ATT | CAA | GAA | TCA | CTT | ACA | ACA | ACA | TCA | ACT | GCA | TTG | GGC | AAG | CTG | CAA | GAC | GTT | GTC | AAC | CAG | AAT | GCT | CAA | GCA | TTG | AAC | ACG | CTT | GTT | AAA | CAG | CTT | AGC | TCC | AAT | TTT | GGT | GCA | ATT | TCA | AGT | GTG | CTA | AAT | GAC | ATT | CTT | TCA | CGA | CTA | GAT | AAA | GTC | GAG | GCA | GAG | GTG | CAA | ATT | GAC | AGG | TTG | ATC | ACA | GGC | AGA | TTG | CAG | AGC | CTT | CAA | ACC | TAT | GTA | ACA | CAA | CAA | CTA | ATC | AGA | GCT | GCT | GAA | ATC | AGA | GCT | TCT | GCT | AAT | CTT | GCT | GCT | ACT | AAA | ATG | TCT | GAG | TGT | GTT | CTT | GGA | CAA | TCA | AAA | AGA | GTT | GAC | TTC | TGT | GGA | AGA | GGC | TAT | CAT | CTT | ATG | TCT | TTT | CCT | CAG | GCT | GCT | CCG | CAT | GGT | GTT | GTT | TTC | TTA | CAT | GTC | ACA | TAT | GTG | CCA | TCG | CAG | GAG | AAA | AAC | TTC | ACC | ACA | GCT | CCA | GCA | ATT | TGT | CAT | GAA | GGC | AAG | GCA | TAC | TTC | CCT | CGT | GAA | GGT | GTT | TTT | GTA | TCT | AAT | GGC | ACT | TCT | TGG | TTC | ATT | ACA | CAG | AGG | AAT | TTT | TAC | TCA | CCA | CAA | ATA | ATC | ACA | ACA | GAT | AAT | ACA | TTT | GTT | GCT | GGA | AAC | TGT | GAT | GTC | GTA | ATT | GGC | ATC | ATT | AAC | AAC | ACA | GTC | TAT | GAT | CCT | CTG | CAA | CCT | GAG | CTT | GAC | TCA | TTT | AAA | GAA | GAG | CTG | GAC | AAG | TAC | TTC | AAA | AAT | CAC | ACA | TCA | CCT | GAT | GTT | GAT | CTT | GGC | GAC | ATT | TCA | GGC | ATT | AAT | GCT | TCT | GTC | GTC | AAT | ATT | CAG | AAG | GAA | ATT | GAC | CGC | CTC | AAT | GAG | GTT | GCC | AAA | AAT | CTA | AAC | GAA | TCG | CTC | ATT | GAT | CTT | CAA | GAA | CTT | GGT | AAA | TAT | GAG | CAA | TAC | ATC | AAA | TGG | CCT | TGG | TAC | GTT | TGG | CTC | GGC | TTC | ATT | GCT | GGA | CTG | ATT | GCT | ATC | GTC | ATG | GCC | ACT | ATA | CTG | CTT | TGT | TGC | ATG | ACC | AGC | TGT | TGC | AGT | TGC | CTC | AAG | GGT | GCA | TGC | TCT | TGT | GGT | TCT | TGC | TGC | AAA | TTT | GAT | GAG | GAC | GAC | TCT | GAG | CCA | GTG | CTC | AAA | GGA | GTC | AAA | TTA | CAC | TAC | ACA | TAA |
KY417142_Bat_SARS_like_CoV_As6526 | TTG | CTT | TTC | TAG | TTA | CGC | TAG | TTA | AAG | CAC | AGG | AAG | G---AT | GCG | GCA | TTA | TCA | GCA | GAA | AAC | C-- | GCA | GCC | AAA | AAT | GGC | --A | CAA | GTT | TCC | TCT | TCC | CGT | CGA | GGT | GTA | TAC | TAT | AAT | GAT | GAC | ATT | TTT | CGT | TCT | GAT | GTA | CTA | CAC | CTC | ACT | CAG | GAT | TAC | TTC | CTG | CCC | TTT | GAT | TCA | AAT | TTA | ACA | CAG | TAC | TTT | TCT | CTT | AAT | G-- | -TT | GAT | TCA | GAT | AGG | TAC | ACC | TAT | TTT | GAC | AAT | CCC | ATT | TTA | GAC | TTC | GGT | GAC | GGC | GTT | TAT | TTC | GCT | GCT | ACT | GAA | AAG | TCT | AAT | GTA | ATC | AGA | GGC | TGG | ATT | TTT | GGT | TCC | ACT | TTT | GAT | AAC | ACC | ACT | CAG | TCA | GCT | GTC | ATA | GTT | AAC | AAT | TCC | ACA | CAC | ATT | ATC | ATA | CGT | GTG | TGC | AAT | TTT | AAC | TTA | TGT | AAA | GAA | CCC | ATG | TAC | ACA | GTG | TCT | CGT | GGC | --- | --- | --- | --- | AC- | --- | -A- | CAA | CAA | TCA | TCG | TGG | GTC | TAT | CAG | AGT | GCT | TTT | AAT | TGC | ACA | TAT | GAT | AGA | GTA | GAG | AGA | AGT | TTT | CAG | CTC | GAT | ACT | GCT | C---CT | AAA | ACT | GGA | AAT | TTT | AAA | GAC | CTA | CGC | GAG | TAT | GTC | TTT | AAG | AAT | CGT | GAT | GGT | TTT | CTT | AGT | GTT | TAC | CAA | ACT | TAT | ACG | GCT | GTT | AAT | TTA | CCT | AGA | GG------------A | TTA | CCT | ATT | GGG | TTC | TCA | GTT | TTG | AGG | CCA | ATC | CTC | AAA | CTG | CCC | TTT | GGA | ATT | AAC | ATT | ACA | TCT | TAT | AGA | GTT | GTT | ATG | GCT | ATG | TTT | AGC | CAA | ACT | ACT | TC- | --- | --- | --- | --- | --- | --T | AAT | TTC | TTA | CCA | GAA | AGT | GCT | GCT | TAT | TAT | GTT | GGT | AAT | CTA | AAG | TAT | ACC | ACC | TTT | ATG | CTT | AGG | TTT | AAT | GAA | AAT | GGG | ACT | ATC | ACT | GAT | GCT | ATT | GAT | TGC | GCC | CAA | AAT | CCA | CTT | GCT | GAA | TTA | AAA | TGC | ACC | ATT | AAA | AAT | TTT | AAT | GTC | AGT | AAA | GGA | ATC | TAC | CAA | ACA | TCT | AAC | TTC | AGA | GTT | TCA | CCA | ACT | CAA | GAA | GTT | GTT | AGG | TTC | CCC | AAC | ATT | ACA | AAC | CGT | TGT | CCT | TTT | GAC | AAA | GTT | TTT | AAT | GCT | ACT | CGC | TTT | CCC | AGT | GTT | TAT | GCG | TGG | GAG | CGA | ACA | AAA | ATT | TCT | GAT | TGT | GTT | GCT | GAT | TAC | ACT | GTT | CTC | TAC | AAC | TCC--- | ACT | TCC | TTC | TCA | ACT | TTC | AAA | TGT | TAT | GGA | GTT | TCT | CCC | TCT | AAG | TTG | ATT | GAT | TTG | TGC | TTT | ACA | AGT | GTG | TAT | GCT | GAT | ACA | TTC | TTG | ATA | AGA | TCT | TCA | GAA | GTA | AGG | CAA | GTT | GCA | CCA | GGT | GAA | ACT | GGT | GTT | ATT | GCT | GAC | TAT | AAC | TAT | AAA | TTG | CCT | GAC | GAC | TTC | ACA | GGC | TGT | GTT | ATT | GCC | TGG | AAT | ACT | GCT | CAG | CAA | GAT | AAG | GG- | --- | --- | --- | --- | --T | CAA | TAT | TAT | TAT | AGA | TCC | TCT | AGA | AAG | ACA | AAA | CTT | AAA | CCT | TTT | GAG | AGG | GAC | CTA | TCT | TCA | GAC | GA- | --A | AAT | GGT | GTA | CGT | ACT | CTT | AGT | AC- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --T | TAT | GAC | TTC | TAT | CCT | ACT | GTG | CCT | ATT | GAA | TAT | CAG | GCT | ACT | AGG | GTT | GTT | GTG | CTT | TCA | TTT | GAG | CTT | TTA | AAT | GCA | CCT | GCT | ACA | GTT | TGT | GGA | CCT | AAA | CTA | TCC | ACG | GGA | CTT | GTT | AAG | AAC | CAG | TGT | GTC | AAT | TTC | AAC | TTT | AAT | GGA | CTC | AAA | GGT | ACT | GGC | GTT | CTG | ACT | GAT | TCT | TCA | AAG | AGA | TTT | CAG | TCA | TTC | CAA | CAA | TTT | GGA | AGA | GAC | ACG | TCG | GAT | TTC | ACT | GAT | TCC | GTT | CGT | GAC | CCG | CAA | ACA | TTG | CAA | GTA | CTT | GAC | ATC | ACA | CCA | TGT | TCT | TTT | GGT | GGT | GTG | AGT | GTA | ATA | ACG | CCG | GGA | ACA | AAT | GCT | TCA | TCC | GAA | GTA | GCT | GTT | CTT | TAC | CAA | GAT | GTA | AAT | TGC | ACT | GAT | GTC | CCA | ACT | GCC | ATA | CGT | GCA | GAC | CAA | TTA | ACA | CCA | GCT | TGG | CGC | GTT | TAC | TCT | ACT | GGA | GTA | AAT | G------TG | TTT | CAA | ACA | CAA | GCT | GGC | TGT | CTT | ATT | GGA | GCT | GAA | CAT | GTT | AAC | GCT | TCG | TAT | GAG | TGT | GAC | ATT | CCT | ATT | GGT | GCT | GGC | ATT | TGT | GCT | AGC | TAC | CAT | ACA | GCT | TCT | ACT | C-- | --- | --- | --- | -TA | CGT | AGT | GTG | GGT | CAG | AAA | TCC | ATT | GTG | GCT | TAC | ACT | ATG | TCT | TTG | GGT | GCA | GAA | AAT | TCT | ATT | GCT | TAT | GCT | AAT | AAT | TCA | ATT | GCC | ATA | CCT | ACA | AAT | TTT | TCA | ATC | AGT | GTC | ACA | ACT | GAA | GTG | ATG | CCT | GTT | TCA | ATG | GCT | AAG | ACA | TCA | GTA | GAT | TGT | ACA | ATG | TAC | ATC | TGT | GGT | GAT | TCT | CAG | GAG | TGC | AGT | AAC | TTA | CTT | CTC | CAG | TAT | GGA | AGT | TTC | TGC | ACG | CAA | TTA | AAT | CGT | GCT | CTC | ACG | GGC | GTT | GCC | TTA | GAA | CAG | GAC | AAA | AAT | ACA | CAG | GAG | GTT | TTT | GCC | CAG | GTT | AAA | CAA | ATG | TAC | AAG | ACA | CCA | GCC | ATA | AAG | GAT | TTT | GGC | GGT | TTC | AAT | TTT | TCA | CAA | ATA | TTG | CCT | GAT | CCT | TCA | AAG | CCA | ACA | AAG | AGA | TCA | TTT | ATT | GAA | GAC | TTA | CTC | TTC | AAC | AAG | GTG | ACT | CTC | GCT | GAT | GCT | GGC | TTT | ATG | AAG | CAA | TAT | GGC | GAA | TGC | CTA | GGT | GAT | ATT | AAT | GCT | AGA | GAC | CTC | ATC | TGT | GCA | CAA | AAG | TTC | AAT | GGC | CTT | ACT | GTC | CTT | CCA | CCT | TTA | CTC | ACA | GAC | GAC | ATG | ATT | GCT | GCA | TAC | ACT | GCT | GCC | CTT | GTC | AGT | GGT | ACT | GCT | ACT | GCT | GGT | TGG | ACG | TTC | GGT | GCT | GGT | GCT | GCT | CTT | CAA | ATA | CCT | TTT | GCT | ATG | CAG | ATG | GCA | TAT | AGG | TTT | AAT | GGC | ATT | GGA | GTT | ACT | CAA | AAT | GTT | CTC | TAT | GAG | AAT | CAA | AAA | CAG | ATT | GCC | AAC | CAA | TTC | AAC | AAG | GCA | ATC | AGT | CAA | ATT | CAA | GAA | TCA | CTT | ACG | ACA | ACA | TCA | ACT | GCA | TTG | GGC | AAG | CTG | CAA | GAC | GTT | GTC | AAT | CAG | AAT | GCT | CAA | GCA | TTA | AAT | ACA | CTT | GTT | AAA | CAA | CTT | AGC | TCC | AAT | TTT | GGT | GCA | ATT | TCA | AGT | GTG | CTA | AAT | GAC | ATC | CTT | TCA | CGC | CTA | GAT | AAA | GTC | GAG | GCA | GAG | GTG | CAA | ATT | GAC | AGG | TTG | ATC | ACA | GGC | AGA | TTG | CAG | AGC | CTT | CAA | ACC | TAT | GTA | ACA | CAA | CAA | CTA | ATC | AGA | GCT | GCT | GAA | ATC | AGA | GCT | TCT | GCT | AAT | CTT | GCT | GCT | ACT | AAA | ATG | TCT | GAG | TGT | GTT | CTT | GGA | CAA | TCA | AAA | AGA | GTT | GAC | TTC | TGT | GGA | AGA | GGC | TAT | CAT | CTT | ATG | TCT | TTT | CCT | CAG | GCT | GCT | CCG | CAT | GGT | GTT | GTT | TTC | TTA | CAT | GTC | ACA | TAT | GTG | CCA | TCG | CAA | GAG | AAA | AAC | TTC | ACC | ACA | GCT | CCA | GCA | ATT | TGT | CAT | GAA | GGC | AAA | GCA | TAC | TTC | CCG | CGT | GAA | GGT | GTT | TTT | GTA | TCT | AAT | GGC | ACT | TCT | TGG | TTC | ATT | ACA | CAG | AGG | AAT | TTT | TAC | TCA | CCA | CAA | ATA | ATC | ACA | ACA | GAT | AAT | ACA | TTT | GTT | GCT | GGA | AAT | TGT | GAT | GTC | GTA | ATT | GGC | ATC | ATT | AAC | AAC | ACA | GTC | TAT | GAT | CCT | CTG | CAA | CCT | GAG | CTT | GAC | TCA | TTC | AAA | GAA | GAG | CTG | GAC | AAG | TAC | TTC | AAA | AAT | CAC | ACA | TCA | CCA | GAT | GTT | GAT | CTC | GGC | GAC | ATT | TCA | GGC | ATT | AAT | GCT | TCT | GTC | GTC | AAT | ATT | CAA | AAA | GAA | ATT | GAC | CGC | CTA | AAC | GAG | GTT | GCC | AAA | AAT | CTA | AAT | GAA | TCG | CTC | ATT | GAC | CTT | CAA | GAA | CTT | GGT | AAA | TAT | GAG | CAA | TAC | ATC | AAA | TGG | CCC | TGG | TAC | GTT | TGG | CTC | GGC | TTT | ATT | GCT | GGA | CTG | ATT | GCT | ATC | GTT | ATG | GCC | ACT | ATA | TTG | CTT | TGT | TGC | ATG | ACC | AGC | TGT | TGC | AGT | TGC | CTC | AAG | GGT | GCA | TGC | TCT | TGT | GGT | TCT | TGC | TGC | AAA | TTT | GAT | GAG | GAC | GAC | TCT | GAG | CCA | GTG | CTC | AAA | GGA | GTC | AAA | TTA | CAC | TAC | ACA | TAA |
KY417147_Bat_SARS_like_CoV_Rs4237 | TTG | CTT | TTC | TAG | TTA | CGC | TAG | TTA | AAG | CAC | AGG | AAG | G---AT | GCG | GCC | TTA | TCA | GCA | GAA | AAC | C-- | GCA | GCC | AAA | AAT | GGC | --A | CAA | GTT | TCC | TCT | TCC | CGT | CGA | GGT | GTA | TAC | TAT | AAT | GAT | GAC | ATT | TTT | CGT | TCT | GAT | GTA | CTA | CAC | CTC | ACT | CAG | GAT | TAC | TTC | CTT | CCC | TTT | GAT | TCA | AAT | TTA | ACA | CAG | TAC | TTT | TCT | CTT | AAT | G-- | -TT | GAT | TCA | GAT | AGG | TAT | ACC | TAT | TTT | GAT | AAC | CCT | ATT | TTA | GAC | TTT | GGT | GAT | GGC | GTT | TAT | TTC | GCC | GCT | ACT | GAA | AAG | TCT | AAT | GTA | ATC | AGA | GGC | TGG | ATT | TTT | GGT | TCC | ACT | TTT | GAC | AAT | ACT | ACT | CAG | TCA | GCT | GTC | ATA | GTT | AAC | AAT | TCC | ACA | CAC | ATT | ATT | ATA | CGT | GTG | TGC | AAT | TTT | AAC | CTA | TGT | AAA | GAA | CCC | ATG | TAC | ACA | GTG | TCT | CGT | GGC | --- | --- | --- | --- | AC- | --- | -A- | CAA | CAA | TCA | TCT | TGG | GTT | TAT | CAG | AGT | GCG | TTC | AAT | TGC | ACA | TAT | GAC | AGA | GTG | GAG | AGA | AGT | TTT | CAG | CTC | GAT | ACC | GCT | C---CT | AAA | ACT | GGA | AAT | TTT | AAA | GAC | TTA | CGT | GAG | TAT | GTC | TTT | AAG | AAT | CGG | GAT | GGT | TTT | CTT | AGT | GTT | TAC | CAA | ACT | TAT | ACA | GCT | GTT | AAT | TTA | CCT | AGG | GG------------A | TTA | CCT | ACT | GGG | TTT | TCA | GTT | TTG | AGG | CCA | ATC | CTC | AAA | CTG | CCC | TTT | GGA | ATT | AAC | ATT | ACA | TCT | TAT | AGA | GTT | GTT | ATG | GCT | ATG | TTT | AGT | CAA | ACT | ACT | TC- | --- | --- | --- | --- | --- | --T | AAT | TTC | TTA | CCA | GAA | AGT | GCT | GCT | TAT | TAT | GTT | GGT | AAT | CTA | AAA | TAT | ACC | ACC | TTT | ATG | CTT | AGT | TTT | AAT | GAA | AAT | GGG | ACT | ATC | ACT | GAT | GCT | ATT | GAC | TGC | GCC | CAA | AAT | CCA | CTT | GCT | GAA | TTA | AAA | TGC | ACC | ATT | AAA | AAT | TTT | AAT | GTC | AGT | AAA | GGA | ATC | TAC | CAA | ACA | TCT | AAC | TTC | AGA | GTT | TCA | CCA | ACT | CAG | GAA | GTT | ATT | AGG | TTC | CCT | AAC | ATT | ACA | AAT | CGT | TGT | CCT | TTC | GAC | AAA | GTT | TTT | AAT | GCT | AGT | CGC | TTT | CCC | AAT | GTT | TAT | GCT | TGG | GAA | AGA | ACA | AAA | ATT | TCT | GAT | TGT | GTT | GCT | GAT | TAC | ACT | GTT | CTC | TAC | AAC | TCA--- | ACT | TCA | TTT | TCA | ACT | TTT | AAA | TGT | TAT | GGA | GTT | TCT | CCC | TCT | AAG | TTG | ATT | GAT | TTG | TGC | TTT | ACA | AGT | GTG | TAT | GCT | GAT | ACA | TTC | TTG | ATA | AGA | TCT | TCA | GAA | GTA | AGG | CAA | GTT | GCA | CCA | GGT | GAA | ACT | GGT | GTT | ATT | GCT | GAC | TAT | AAC | TAC | AAA | CTG | CCT | GAT | GAC | TTT | ACA | GGC | TGT | GTC | ATA | GCT | TGG | AAC | ACT | GCT | AAA | CAA | GAT | CAG | GG- | --- | --- | --- | --- | --C | CAG | TAT | TAT | TAT | AGA | TCC | TCC | AGA | AAA | ACA | AAA | CTT | AAA | CCT | TTT | GAG | AGG | GAT | CTA | TCT | TCT | GAC | GA- | --A | AAT | GGT | GTA | CGT | ACT | CTT | AGT | AC- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --T | TAT | GAC | TTC | TAT | CCT | ACT | GTG | CCT | ATT | GAA | TAT | CAG | GCT | ACT | AGG | GTT | GTT | GTG | CTT | TCA | TTT | GAG | CTT | TTA | AAT | GCA | CCT | GCT | ACA | GTT | TGT | GGA | CCT | AAA | CTA | TCC | ACA | GGA | CTT | GTT | AAG | AAC | CAG | TGT | GTC | AAT | TTC | AAT | TTT | AAC | GGA | CTC | AAA | GGT | ACT | GGT | GTT | CTG | ACT | GAT | TCT | TCA | AAG | AGA | TTT | CAG | TCA | TTT | CAA | CAA | TTT | GGA | AGA | GAT | ATG | TCG | GAT | TTC | ACT | GAT | TCC | GTT | CGT | GAC | CCG | CAA | ACA | TTG | CAG | ATA | CTT | GAC | ATT | ACA | CCA | TGT | TCT | TTT | GGT | GGT | GTG | AGT | GTA | ATA | ACA | CCT | GGA | ACA | AAT | GCT | TCA | TCC | GAA | GTG | GCT | GTT | CTT | TAC | CAA | GAT | GTA | AAC | TGC | ACC | GAT | GTC | CCA | ACG | GCC | ATA | CGT | GCT | GAT | CAA | TTA | ACA | CCA | GCG | TGG | CGC | GTT | TAC | TCC | ACT | GGA | ATA | AAT | G------TT | TTT | CAA | ACA | CAA | GCG | GGC | TGT | CTT | ATT | GGG | GCT | GAA | CAT | GTC | AAT | GCT | TCC | TAT | GAG | TGT | GAC | ATC | CCT | ATT | GGT | GCT | GGC | ATT | TGT | GCT | AGC | TAC | CAT | ACA | GCC | TCT | ACT | T-- | --- | --- | --- | -TA | CGT | AGT | GTA | GGT | CAG | AAA | TCC | ATT | GTG | GCT | TAC | ACT | ATG | TCT | TTG | GGT | GCA | GAA | AAT | TCT | ATT | GCT | TAC | GCT | AAT | AAC | TCA | ATT | GCC | ATA | CCT | ACA | AAT | TTT | TCA | ATT | AGT | GTC | ACG | ACT | GAA | GTG | ATG | CCA | GTT | TCA | ATG | TCT | AAG | ACA | TCA | GTA | GAT | TGT | ACA | ATG | TAC | ATC | TGT | GGT | GAC | TCT | CAG | GAG | TGC | AGT | AAT | TTA | CTT | CTT | CAA | TAC | GGA | AGT | TTC | TGC | ACG | CAA | TTA | AAT | CGT | GCT | CTT | ACG | GGC | ATT | GCC | ATA | GAA | CAG | GAC | AAA | AAT | ACA | CAG | GAG | GTT | TTT | GCC | CAG | GTT | AAA | CAA | ATG | TAC | AAG | ACA | CCA | GCC | ATA | AAG | GAT | TTT | GGC | GGT | TTC | AAT | TTT | TCA | CAA | ATA | TTG | CCT | GAC | CCT | TCT | AAG | CCA | ACA | AAG | AGA | TCA | TTT | ATT | GAA | GAT | TTA | CTT | TTC | AAC | AAG | GTG | ACT | CTC | GCT | GAT | GCT | GGC | TTT | ATG | AAG | CAG | TAT | GGC | GAA | TGC | CTA | GGT | GAT | ATT | AAT | GCT | AGA | GAC | CTC | ATC | TGT | GCA | CAA | AAG | TTC | AAT | GGC | CTT | ACT | GTC | TTG | CCA | CCT | TTA | CTC | ACG | GAT | GAC | ATG | ATT | GCT | GCA | TAC | ACT | GCT | GCC | CTA | GTC | AGT | GGT | ACT | GCT | ACT | GCT | GGC | TGG | ACC | TTC | GGT | GCT | GGT | GCT | GCT | CTT | CAA | ATA | CCT | TTT | GCT | ATG | CAG | ATG | GCA | TAT | AGG | TTC | AAT | GGC | ATT | GGA | GTT | ACT | CAA | AAC | GTT | CTC | TAT | GAG | AAT | CAA | AAA | CAG | ATC | GCC | AAT | CAA | TTC | AAC | AAG | GCG | ATC | AGT | CAA | ATT | CAA | GAA | TCA | CTT | ACA | ACA | ACA | TCA | ACT | GCA | TTG | GGC | AAG | CTG | CAA | GAC | GTT | GTC | AAC | CAG | AAC | GCT | CAA | GCA | TTG | AAT | ACA | CTT | GTT | AAA | CAG | CTT | AGC | TCT | AAT | TTT | GGT | GCA | ATT | TCA | AGT | GTG | CTA | AAT | GAC | ATT | CTT | TCA | CGA | CTA | GAC | AAG | GTC | GAG | GCA | GAG | GTG | CAA | ATT | GAC | AGG | TTG | ATC | ACA | GGC | AGA | TTG | CAA | AGC | CTT | CAA | ACC | TAT | GTA | ACA | CAA | CAA | CTA | ATC | AGA | GCT | GCT | GAA | ATC | AGA | GCT | TCT | GCT | AAT | CTT | GCT | GCT | ACT | AAA | ATG | TCT | GAG | TGT | GTT | CTT | GGA | CAA | TCA | AAA | AGA | GTT | GAT | TTC | TGT | GGA | AGA | GGC | TAT | CAT | CTT | ATG | TCC | TTT | CCT | CAG | GCC | GCT | CCG | CAT | GGT | GTT | GTT | TTC | TTA | CAT | GTC | ACA | TAT | GTG | CCA | TCG | CAG | GAG | AAA | AAC | TTC | ACC | ACA | GCT | CCA | GCA | ATT | TGT | CAT | GAA | GGC | AAA | GCA | TAC | TTC | CCG | CGT | GAA | GGT | GTT | TTT | GTA | TCT | AAT | GGC | ACT | TCT | TGG | TTC | ATT | ACA | CAG | AGG | AAT | TTT | TAT | TCA | CCA | CAA | ATA | ATC | ACA | ACA | GAT | AAT | ACA | TTT | GTT | GCC | GGA | AAT | TGT | GAT | GTC | GTA | ATT | GGC | ATC | ATT | AAC | AAT | ACA | GTC | TAT | GAT | CCT | CTG | CAA | CCT | GAG | CTT | GAC | TCA | TTT | AAA | GAA | GAG | CTG | GAC | AAG | TAC | TTT | AAA | AAT | CAC | ACA | TCA | CCT | GAT | GTT | GAT | CTT | GGC | GAC | ATT | TCA | GGC | ATT | AAT | GCT | TCT | GTC | GTC | AAT | ATT | CAA | AAA | GAA | ATT | GAC | CGC | CTC | AAT | GAG | GTT | GCC | AAA | AAT | CTA | AAT | GAA | TCG | CTC | ATT | GAC | CTT | CAA | GAA | CTT | GGT | AAA | TAT | GAG | CAA | TAC | ATC | AAA | TGG | CCA | TGG | TAT | GTT | TGG | CTC | GGC | TTC | ATT | GCT | GGA | CTG | ATT | GCT | ATC | GTC | ATG | GCC | ACT | ATA | CTG | CTT | TGT | TGC | ATG | ACC | AGC | TGT | TGC | AGT | TGC | CTC | AAG | GGT | GCA | TGC | TCT | TGT | GGT | TCT | TGC | TGC | AAA | TTT | GAT | GAG | GAC | GAC | TCT | GAG | CCT | GTG | CTC | AAA | GGA | GTC | AAA | TTA | CAC | TAC | ACA | TAA |
KY417148_Bat_SARS_like_CoV_Rs4247 | TTG | CTT | TTC | TAG | TTA | CGC | TAG | TTA | AAG | CAC | AGG | AAG | G---AT | GCG | GCA | TTA | TCA | GCA | GAA | AAC | C-- | GCA | GCC | AAA | AAT | GGC | --A | CAA | GTT | TCC | TCT | TCC | CGT | CGA | GGT | GTA | TAT | TAT | AAT | GAT | GAT | ATT | TTT | CGT | TCT | GAT | GTA | CTA | CAT | CTC | ACT | CAG | GAT | TAC | TTC | CTG | CCC | TTT | GAT | TCA | AAT | TTA | ACA | CAG | TAC | TTT | TCT | CTT | AAT | G-- | -TT | GAT | TCA | GAT | AGG | TAT | ACC | TAT | TTT | GAT | AAC | CCT | ATT | TTA | GAC | TTT | GGT | GAT | GGC | GTT | TAT | TTC | GCC | GCT | ACT | GAA | AAG | TCT | AAT | GTA | ATC | AGA | GGC | TGG | ATT | TTT | GGT | TCC | ACT | TTT | GAC | AAT | ACT | ACT | CAG | TCA | GCT | GTC | ATA | GTT | AAC | AAT | TCC | ACA | CAC | ATT | ATT | ATA | CGT | GTG | TGC | AAT | TTT | AAC | CTA | TGT | AAA | GAA | CCC | ATG | TAC | ACA | GTG | TCT | CGT | GGC | --- | --- | --- | --- | AC- | --- | -A- | CAA | CAA | TCA | TCT | TGG | GTT | TAT | CAG | AGT | GCG | TTC | AAT | TGC | ACA | TAT | GAC | AGA | GTG | GAG | AGA | AGT | TTT | CAG | CTC | GAT | ACC | GCT | C---CT | AAA | ACT | GGA | AAT | TTT | AAA | GAC | TTA | CGT | GAG | TAT | GTC | TTT | AAG | AAT | CGG | GAT | GGT | TTT | CTT | AGT | GTT | TAC | CAA | ACT | TAT | ACA | GCT | GTT | AAT | TTA | CCT | AGG | GG------------A | TTA | CCT | ACT | GGG | TTT | TCA | GTT | TTG | AGG | CCA | ATC | CTC | AAA | CTG | CCC | TTT | GGA | ATT | AAC | ATT | ACA | TCT | TAT | AGA | GTT | GTT | ATG | GCT | ATG | TTT | AGT | CAA | ACT | ACT | TC- | --- | --- | --- | --- | --- | --T | AAT | TTC | TTA | CCA | GAA | AGT | GCT | GCT | TAT | TAT | GTT | GGT | AAT | CTA | AAA | TAT | ACC | ACC | TTT | ATG | CTT | AGT | TTT | AAT | GAA | AAT | GGG | ACT | ATC | ACT | GAT | GCT | ATT | GAC | TGC | GCC | CAA | AAT | CCA | CTT | GCT | GAA | TTA | AAA | TGC | ACC | ATT | AAA | AAT | TTT | AAT | GTC | AGT | AAA | GGA | ATC | TAC | CAA | ACA | TCT | AAC | TTC | AGA | GTT | TCA | CCA | ACT | CAG | GAA | GTT | ATT | AGG | TTC | CCT | AAC | ATT | ACA | AAT | CGT | TGT | CCT | TTT | GAC | AAA | GTT | TTT | AAT | GCT | AGT | CGC | TTT | CCC | AAT | GTT | TAC | GCT | TGG | GAA | AGA | ACA | AAA | ATT | TCT | GAT | TGT | GTT | GCT | GAT | TAC | ACT | GTT | CTC | TAC | AAC | TCA--- | ACT | TCA | TTT | TCA | ACT | TTT | AAA | TGT | TAT | GGA | GTT | TCT | CCC | TCT | AAG | TTG | ATT | GAT | TTG | TGC | TTT | ACA | AGT | GTG | TAT | GCT | GAT | ACA | TTC | TTG | ATA | AGA | TCT | TCA | GAA | GTA | AGG | CAA | GTT | GCA | CCA | GGT | GAA | ACT | GGT | GTT | ATT | GCT | GAC | TAC | AAT | TAC | AAG | CTG | CCT | GAT | GAT | TTC | ACT | GGC | TGT | GTA | ATA | GCC | TGG | AAT | ACT | GCT | AAG | CAG | GAC | ACT | GG- | --- | --- | --- | --- | --C | CAT | TAT | TAT | TAT | AGA | TCT | CAC | CGT | AAG | ACT | AAG | CTC | AAG | CCT | TTT | GAG | AGA | GAT | CTA | TCG | TCT | GAT | GAT | GGT | AAT | GGT | GTA | TAC | ACA | CTT | AGT | AC- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --T | TAT | GAC | TTC | AAC | CCT | AAC | GTA | CCA | GTA | GCA | TAT | CAG | GCC | ACT | AGA | GTT | GTT | GTT | CTT | TCT | TTT | GAA | CTT | CTT | AAT | GCA | CCC | GCA | ACA | GTT | TGT | GGA | CCT | AAA | TTG | TCT | ACA | CAA | CTA | GTT | AAG | AAC | CAG | TGT | GTT | AAT | TTT | AAC | TTC | AAT | GGA | CTC | AAG | GGC | ACT | GGT | GTT | TTG | ACT | GAC | TCA | TCA | AAG | AGG | TTT | CAG | TCT | TTT | CAA | CAA | TTT | GGT | CGT | GAC | ACT | TCT | GAC | TTT | ACG | GAT | TCA | GTG | CGT | GAC | CCA | CAA | ACA | CTA | GAA | ATA | CTT | GAC | ATT | ACA | CCA | TGT | TCT | TTT | GGT | GGT | GTG | AGT | GTA | ATA | ACA | CCT | GGA | ACA | AAT | GCT | TCA | TCT | GAA | GTG | GCT | GTT | CTT | TAC | CAA | GAT | GTA | AAT | TGC | ACT | GAT | GTC | CCA | ACG | GCC | ATA | CGT | GCT | GAT | CAA | TTA | ACA | CCA | GCT | TGG | CGC | GTT | TAC | TCC | ACT | GGA | ATA | AAT | G------TT | TTT | CAA | ACA | CAA | GCG | GGC | TGT | CTT | ATT | GGG | GCT | GAA | CAT | GTC | AAT | GCT | TCT | TAC | GAG | TGT | GAC | ATC | CCT | ATT | GGT | GCT | GGC | ATT | TGT | GCT | AGC | TAC | CAT | ACA | GCC | TCT | ACT | T-- | --- | --- | --- | -TA | CGT | AGT | GTA | GGT | CAG | AAA | TCC | ATT | GTG | GCT | TAC | ACT | ATG | TCT | TTG | GGT | GCA | GAA | AAT | TCT | ATT | GCT | TAC | GCT | AAT | AAC | TCA | ATT | GCC | ATA | CCT | ACA | AAT | TTT | TCA | ATT | AGT | GTC | ACG | ACT | GAA | GTG | ATG | CCA | GTT | TCA | ATG | TCT | AAG | ACA | TCA | GTA | GAT | TGT | ACA | ATG | TAC | ATC | TGT | GGT | GAC | TCT | CAG | GAG | TGC | AGT | AAT | TTA | CTT | CTT | CAA | TAC | GGA | AGT | TTC | TGC | ACG | CAA | TTA | AAT | CGT | GCT | CTT | ACG | GGC | ATT | GCC | ATA | GAA | CAG | GAT | AAA | AAT | ACA | CAG | GAG | GTT | TTT | GCC | CAG | GTT | AAA | CAA | ATG | TAC | AAG | ACA | CCA | GCC | ATA | AAG | GAT | TTT | GGC | GGT | TTC | AAT | TTT | TCA | CAA | ATA | TTG | CCC | GAT | CCT | TCA | AAG | CCA | ACA | AAG | AGA | TCA | TTT | ATT | GAA | GAC | CTA | CTC | TTC | AAC | AAG | GTG | ACT | CTC | GCT | GAT | GCT | GGC | TTT | ATG | AAG | CAA | TAT | GGC | GAA | TGC | CTA | GGT | GAT | ATT | AAT | GCT | AGA | GAT | CTC | ATT | TGT | GCG | CAG | AAG | TTC | AAT | GGA | CTT | ACA | GTG | TTG | CCA | CCT | CTA | CTC | ACA | GAT | GAC | ATG | ATT | GCT | GCA | TAC | ACT | GCT | GCC | CTT | GTC | AGT | GGT | ACT | GCT | ACT | GCT | GGT | TGG | ACG | TTC | GGT | GCT | GGT | GCT | GCT | CTT | CAA | ATA | CCT | TTT | GCT | ATG | CAG | ATG | GCA | TAT | AGG | TTT | AAT | GGC | ATT | GGA | GTT | ACT | CAA | AAT | GTT | CTC | TAT | GAG | AAT | CAA | AAA | CAG | ATC | GCC | AAT | CAA | TTC | AAC | AAG | GCG | ATC | AGT | CAA | ATT | CAA | GAA | TCA | CTT | ACA | ACA | ACA | TCA | ACT | GCA | TTG | GGC | AAG | CTG | CAA | GAC | GTT | GTC | AAC | CAG | AAC | GCT | CAA | GCA | TTG | AAT | ACA | CTT | GTT | AAA | CAG | CTT | AGC | TCT | AAT | TTT | GGT | GCA | ATT | TCA | AGT | GTG | CTA | AAT | GAC | ATT | CTT | TCA | CGA | CTA | GAC | AAG | GTC | GAG | GCA | GAG | GTG | CAA | ATT | GAC | AGG | TTG | ATC | ACA | GGC | AGA | TTG | CAA | AGC | CTT | CAA | ACC | TAT | GTA | ACA | CAA | CAA | CTA | ATC | AGA | GCT | GCT | GAA | ATC | AGA | GCT | TCT | GCT | AAT | CTT | GCT | GCT | ACT | AAA | ATG | TCT | GAG | TGT | GTT | CTT | GGA | CAA | TCA | AAA | AGA | GTT | GAT | TTC | TGT | GGA | AGA | GGC | TAT | CAT | CTT | ATG | TCC | TTT | CCT | CAG | GCC | GCT | CCG | CAT | GGT | GTT | GTT | TTC | TTA | CAT | GTC | ACA | TAT | GTG | CCA | TCG | CAG | GAG | AAA | AAC | TTC | ACC | ACA | GCT | CCA | GCA | ATT | TGT | CAT | GAA | GGC | AAA | GCA | TAC | TTC | CCG | CGT | GAA | GGT | GTT | TTT | GTA | TCT | AAT | GGC | ACT | TCT | TGG | TTC | ATT | ACA | CAG | AGG | AAT | TTT | TAT | TCA | CCA | CAA | ATA | ATC | ACA | ACA | GAT | AAT | ACA | TTT | GTT | GCC | GGA | AAT | TGT | GAT | GTC | GTA | ATT | GGC | ATC | ATT | AAC | AAC | ACA | GTC | TAT | GAT | CCT | CTG | CAA | CCT | GAG | CTT | GAC | TCA | TTT | AAA | GAA | GAG | CTG | GAC | AAG | TAC | TTT | AAA | AAT | CAC | ACA | TCA | CCC | GAT | GTT | GAT | CTT | GGC | GAC | ATT | TCA | GGC | ATT | AAT | GCT | TCT | GTC | GTC | AAT | ATT | CAA | AAA | GAA | ATT | GAC | CGC | CTC | AAT | GAG | GTT | GCC | AAA | AAT | CTA | AAT | GAA | TCG | CTC | ATT | GAC | CTT | CAA | GAA | CTT | GGT | AAA | TAT | GAG | CAA | TAC | ATC | AAA | TGG | CCA | TGG | TAC | GTT | TGG | CTC | GGC | TTC | ATT | GCT | GGA | CTG | ATT | GCT | ATC | GTC | ATG | GCC | ACT | ATA | CTG | CTT | TGT | TGC | ATG | ACC | AGC | TGT | TGC | AGT | TGC | CTC | AAG | GGT | GCA | TGC | TCT | TGT | GGT | TCT | TGC | TGC | AAA | TTT | GAT | GAG | GAT | GAC | TCT | GAG | CCT | GTG | CTC | AAG | GGA | GTC | AAA | TTA | CAC | TAC | ACA | TAA |
MK211375_CoV_BtRs_BetaCoV_YN2018A | TTG | CTT | TTC | TAG | TTA | CGC | TAG | TTG | AAG | CAC | AGG | AAG | G---AT | GCG | GCA | TTA | TCA | GTA | GAA | AAC | C-- | GCA | GCC | AAA | AAT | GGC | --A | CAA | GTC | TCC | TCT | TCC | CGT | CGA | GGT | GTA | TAC | TAT | AAT | GAT | GAC | ATT | TTT | CGT | TCT | GAT | GTA | TTA | CAC | CTC | ACT | CAG | GAT | TAC | TTC | CTG | CCC | TTT | GAT | TCA | AAT | TTA | ACA | CAG | TAC | TTT | TCT | CTT | AAT | G-- | -TT | GAT | TCA | GAT | AGG | TAC | ACC | TAT | TTT | GAC | AAT | CCC | ATT | TTA | GAC | TTC | GGT | GAC | GGC | GTT | TAT | TTC | GCC | GCT | ACT | GAA | AAG | TCT | AAT | GTA | ATC | AGA | GGC | TGG | ATT | TTT | GGT | TCC | ACT | TTT | GAT | AAC | ACC | ACT | CAG | TCA | GCT | GTC | ATA | GTT | AAC | AAT | TCC | ACA | CAC | ATT | ATC | ATA | CGT | GTG | TGC | AAT | TTT | AAC | TTA | TGT | AAA | GAA | CCC | ATG | TAC | ACA | GTG | TCT | CGT | GGC | --- | --- | --- | --- | AC- | --- | -A- | CAA | CAA | TCA | TCG | TGG | GTC | TAT | CAG | AGT | GCT | TTT | AAT | TGC | ACA | TAT | GAT | AGA | GTA | GAG | AGA | AGT | TTT | CAG | CTC | GAT | ACT | GCT | C---CT | AAA | ACT | GGA | AAT | TTT | AAA | GAC | CTA | CGC | GAG | TAT | GTC | TTT | AAG | AAT | CGT | GAT | GGT | TTT | CTT | AGT | GTT | TAC | CAA | ACT | TAT | ACG | GCT | GTT | AAT | TTA | CCT | AGA | GG------------A | TTA | CCT | ATT | GGG | TTT | TCA | GTT | TTG | AGG | CCA | ATC | CTC | AAA | CTG | CCC | TTT | GGA | ATT | AAC | ATT | ACA | TCT | TAT | AGA | GTT | GTT | ATG | GCT | ATG | TTT | AGC | CAA | ACT | ACT | TC- | --- | --- | --- | --- | --- | --T | AAT | TTC | TTA | CCA | GAA | AGT | GCT | GCT | TAT | TAT | GTT | GGT | AAT | CTA | AAG | TAT | ACC | ACC | TTT | ATG | CTT | AGG | TTT | AAT | GAA | AAT | GGG | ACT | ATC | ACT | GAT | GCT | ATT | GAT | TGC | GCC | CAA | AAT | CCA | CTT | GCT | GAA | TTA | AAA | TGC | ACC | ATT | AAA | AAT | TTT | AAT | GTC | AGT | AAA | GGA | ATC | TAC | CAA | ACA | TCT | AAC | TTC | AGA | GTT | TCA | CCA | ACT | CAA | GAA | GTT | GTT | AGG | TTC | CCT | AAC | ATT | ACA | AAC | CGC | TGT | CCT | TTC | GAC | AAA | GTT | TTT | AAT | GCT | AGT | CGC | TTT | CCC | AAT | GTT | TAT | GCT | TGG | GAA | AGA | ACA | AAA | ATT | TCT | GAT | TGT | GTT | GCT | GAT | TAC | ACT | GTT | CTC | TAC | AAC | TCA--- | ACT | TCA | TTT | TCA | ACT | TTT | AAA | TGT | TAT | GGA | GTT | TCT | CCC | TCT | AAG | TTG | ATT | GAT | TTG | TGT | TTT | ACA | AGT | GTG | TAT | GCT | GAT | ACA | TTC | TTG | ATA | AGA | TCT | TCA | GAA | GTA | AGG | CAA | GTC | GCA | CCA | GGT | GAA | ACT | GGT | GTT | ATT | GCT | GAC | TAC | AAT | TAC | AAG | CTG | CCT | GAT | GAT | TTT | ACT | GGC | TGT | GTA | ATA | GCC | TGG | AAT | ACT | GCT | AAG | CAG | GAT | ACT | GG- | --- | --- | --- | --- | --T | CAT | TAT | TAT | TAT | AGA | TCT | CAC | CGT | AAG | ACT | AAG | CTC | AAG | CCT | TTT | GAG | AGA | GAT | CTA | TCG | TCT | GAT | GAT | GGT | AAT | GGT | GTA | TAT | ACA | CTT | AGT | AC- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --T | TAT | GAC | TTC | AAC | CCT | AAC | GTA | CCA | GTA | GCA | TAT | CAG | GCC | ACT | AGA | GTT | GTT | GTT | CTT | TCT | TTT | GAA | CTT | CTT | AAC | GCA | CCC | GCA | ACA | GTT | TGC | GGA | CCT | AAA | TTG | TCT | ACA | CAA | CTA | GTT | AAG | AAC | CAG | TGT | GTT | AAT | TTT | AAC | TTC | AAT | GGA | CTT | AAG | GGC | ACT | GGT | GTT | TTG | ACT | GAC | TCA | TCA | AAG | AGG | TTT | CAG | TCT | TTT | CAA | CAA | TTT | GGT | CGT | GAT | ACT | TCT | GAC | TTT | ACG | GAT | TCA | GTG | CGC | GAC | CCA | CAA | ACA | CTA | GAG | ATA | CTT | GAC | ATT | ACA | CCA | TGT | TCT | TTT | GGT | GGT | GTG | AGT | GTA | ATA | ACG | CCT | GGA | ACA | AAT | GCT | TCA | TCC | GAA | GTA | GCT | GTT | CTT | TAC | CAA | GAT | GTA | AAT | TGC | ACT | GAT | GTC | CCA | ACT | GCC | ATA | CGT | GCA | GAC | CAA | TTA | ACA | CCA | GCT | TGG | CGC | GTT | TAC | TCT | ACT | GGA | GTA | AAT | G------TG | TTT | CAA | ACA | CAA | GCT | GGC | TGT | CTT | ATT | GGA | GCT | GAA | CAT | GTT | AAC | GCT | TCG | TAT | GAG | TGT | GAC | ATT | CCT | ATT | GGT | GCT | GGC | ATT | TGT | GCT | AGC | TAC | CAT | ACA | GCT | TCT | ACT | C-- | --- | --- | --- | -TA | CGT | AGT | GTG | GGT | CAG | AAA | TCC | ATT | GTG | GCT | TAC | ACT | ATG | TCT | TTG | GGT | GCA | GAA | AAT | TCT | ATT | GCT | TAT | GCT | AAT | AAT | TCA | ATT | GCC | ATA | CCT | ACA | AAT | TTT | TCA | ATC | AGT | GTC | ACA | ACT | GAA | GTG | ATG | CCT | GTT | TCA | ATG | GCT | AAG | ACA | TCA | GTA | GAT | TGT | ACA | ATG | TAC | ATC | TGT | GGT | GAT | TCT | CAG | GAG | TGC | AGT | AAC | TTA | CTT | CTC | CAG | TAT | GGA | AGT | TTC | TGC | ACG | CAA | TTA | AAT | CGT | GCT | CTC | ACG | GGC | GTT | GCC | TTA | GAA | CAG | GAC | AAA | AAT | ACA | CAG | GAG | GTT | TTT | GCC | CAG | GTT | AAA | CAA | ATG | TAC | AAG | ACA | CCA | GCC | ATA | AAG | GAT | TTT | GGC | GGT | TTC | AAT | TTT | TCA | CAA | ATA | TTG | CCT | GAC | CCT | TCA | AAG | CCA | ACA | AAG | AGA | TCA | TTT | ATT | GAA | GAC | TTA | CTC | TTC | AAC | AAG | GTG | ACT | CTC | GCT | GAT | GCT | GGC | TTT | ATG | AAG | CAA | TAT | GGC | GAA | TGC | CTA | GGT | GAT | ATT | AAT | GCT | AGA | GAC | CTC | ATC | TGT | GCA | CAA | AAG | TTC | AAT | GGC | CTT | ACT | GTC | CTT | CCA | CCT | TTA | CTC | ACA | GAT | GAC | ATG | ATT | GCT | GCA | TAC | ACT | GCT | GCC | CTT | GTC | AGT | GGT | ACT | GCT | ACT | GCT | GGT | TGG | ACG | TTT | GGT | GCT | GGT | GCT | GCT | CTT | CAA | ATA | CCT | TTT | GCT | ATG | CAG | ATG | GCA | TAT | AGG | TTT | AAT | GGC | ATT | GGA | GTT | ACT | CAA | AAT | GTT | CTC | TAT | GAG | AAT | CAA | AAA | CAG | ATT | GCC | AAC | CAA | TTC | AAC | AAG | GCA | ATC | AGT | CAA | ATT | CAA | GAA | TCA | CTT | ACG | ACA | ACA | TCA | ACT | GCA | TTG | GGC | AAG | CTG | CAA | GAC | GTC | GTC | AAT | CAG | AAT | GCT | CAA | GCA | TTA | AAT | ACA | CTT | GTT | AAA | CAA | CTT | AGC | TCC | AAT | TTT | GGT | GCA | ATT | TCA | AGT | GTG | CTA | AAT | GAT | ATC | CTT | TCA | CGC | CTA | GAT | AAA | GTC | GAG | GCA | GAG | GTG | CAA | ATT | GAC | AGG | TTG | ATC | ACA | GGC | AGA | TTG | CAG | AGC | CTT | CAA | ACC | TAT | GTA | ACA | CAA | CAA | CTA | ATC | AGA | GCT | GCT | GAA | ATC | AGA | GCT | TCT | GCT | AAT | CTT | GCT | GCT | ACT | AAA | ATG | TCT | GAG | TGT | GTT | CTT | GGA | CAA | TCA | AAA | AGA | GTT | GAC | TTC | TGT | GGA | AGA | GGC | TAT | CAT | CTT | ATG | TCT | TTT | CCT | CAG | GCT | GCT | CCG | CAT | GGT | GTT | GTT | TTC | TTA | CAT | GTC | ACA | TAT | GTG | CCA | TCG | CAG | GAG | AAA | AAC | TTC | ACC | ACA | GCT | CCA | GCA | ATT | TGT | CAT | GAA | GGC | AAA | GCA | TAC | TTC | CCG | CGT | GAA | GGT | GTT | TTT | GTA | TCT | AAT | GGC | ACT | TTT | TGG | TTC | ATT | ACA | CAG | AGG | AAT | TTT | TAC | TCA | CCA | CAA | ATA | ATC | ACA | ACA | GAT | AAT | ACA | TTT | GTT | GCT | GGA | AAT | TGT | GAT | GTC | GTA | ATT | GGC | ATC | ATT | AAC | AAC | ACA | GTC | TAT | GAT | CCT | CTG | CAA | CCT | GAG | CTT | GAC | TCA | TTT | AAA | GAA | GAG | CTG | GAC | AAG | TAC | TTC | AAA | AAT | CAC | ACA | TCA | CCA | GAT | GTT | GAT | CTC | GGC | GAC | ATT | TCA | GGC | ATT | AAT | GCT | TCT | GTC | GTC | AAT | ATT | CAA | AAA | GAA | ATT | GAC | CGC | CTA | AAC | GAG | GTT | GCC | AAA | AAT | CTA | AAT | GAA | TCG | CTC | ATT | GAC | CTC | CAA | GAA | CTT | GGT | AAA | TAT | GAG | CAA | TAC | ATC | AAA | TGG | CCC | TGG | TAC | GTT | TGG | CTC | GGC | TTT | ATT | GCT | GGA | CTG | ATT | GCT | ATC | GTT | ATG | GCC | ACT | ATA | CTG | CTT | TGT | TGC | ATG | ACC | AGC | TGT | TGC | AGT | TGC | CTC | AAG | GGT | GCA | TGC | TCT | TGT | GGT | TCT | TGC | TGC | AAA | TTT | GAT | GAG | GAC | GAC | TCT | GAG | CCA | GTG | CTC | AAA | GGA | GTC | AAA | TTA | CAC | TAC | ACA | TAA |
DQ071615_Bat_SARS_CoV_Rp3 | TTG | CTT | TCC | TAG | CTA | GTC | TAG | CTA | AAG | CAC | AAG | AAG | G---AT | GTG | GCA | TTA | TCA | GTC | GAA | AAC | C-- | TCA | GCC | AAA | AAT | GGC | --A | CAA | GTC | TCT | TCT | TCT | CGT | AGA | GGT | GTG | TAC | TAT | AAT | GAT | GAC | ATT | TTT | CGT | TCT | AAT | GTA | CTA | CAC | CTG | ACG | CAG | GAT | TAT | TTC | CTG | CCA | TTT | GAT | TCA | AAT | TTA | ACA | CAG | TAC | TTT | TCT | CTT | AAT | G-- | -TT | GAT | TCA | GAT | AGG | TTT | ACC | TAC | TTT | GAC | AAT | CCT | ATT | TTA | GAC | TTT | GGT | GAC | GGC | GTC | TAC | TTC | GCT | GCT | ACT | GAA | AAG | TCT | AAT | GTA | ATT | AGG | GGC | TGG | ATT | TTT | GGT | TCC | ACT | TTC | GAT | AAC | ACA | ACC | CAG | TCA | GCT | GTT | ATA | GTT | AAT | AAT | TCC | ACA | CAC | ATT | ATT | ATA | CGT | GTG | TGC | AAC | TTC | AAC | TTA | TGT | AAA | GAA | CCT | ATG | TAT | ACA | GTG | TCT | CGT | GGT | --- | --- | --- | --- | GC- | --- | -A- | CAA | CAA | TCA | TCT | TGG | GTT | TAT | CAG | AGT | GCA | TTC | AAT | TGC | ACA | TAT | GAT | AGA | GTG | GAA | AAA | AGC | TTT | CAG | CTC | GAC | ACT | GCT | C---CT | AAA | ACT | GGA | AAT | TTT | AAA | GAC | CTA | CGT | GAG | TAT | GTC | TTT | AAG | AAT | CGG | GAT | GGC | TTT | CTC | AGT | GTT | TAC | CAA | ACT | TAT | ACA | GCT | GTT | AAT | TTA | CCT | AGA | GG------------A | TTA | CCT | ATT | GGC | TTT | TCA | GTT | TTG | AGG | CCA | ATT | CTC | AAA | CTG | CCC | TTT | GGA | ATT | AAC | ATT | ACA | TCT | TAT | AGA | GTT | GTT | ATG | GCT | ATG | TTT | AGC | CAA | ACT | ACT | TC- | --- | --- | --- | --- | --- | --T | AAT | TTC | CTA | CCA | GAA | AGT | GCT | GCT | TAT | TAT | GTT | GGT | AAT | TTA | AAA | TAC | ACC | ACT | TTC | ATG | CTT | AGT | TTT | AAT | GAA | AAT | GGG | ACT | ATT | ACC | AAT | GCT | ATT | GAT | TGT | GCT | CAA | AAC | CCA | CTT | GCT | GAA | CTA | AAA | TGC | ACC | ATT | AAA | AAT | TTC | AAT | GTC | AGC | AAG | GGA | ATC | TAC | CAA | ACA | TCT | AAC | TTC | AGA | GTT | TCG | CCA | ACT | CAG | GAA | GTT | ATT | AGA | TTC | CCA | AAC | ATT | ACA | AAT | CGT | TGT | CCT | TTT | GAC | AAA | GTT | TTT | AAT | GCT | ACA | CGC | TTT | CCT | AAT | GTG | TAT | GCG | TGG | GAG | AGA | ACT | AAA | ATT | TCT | GAT | TGT | GTT | GCT | GAC | TAC | ACT | GTT | CTC | TAC | AAC | TCA--- | ACT | TCT | TTC | TCA | ACT | TTT | AAG | TGC | TAT | GGA | GTT | TCT | CCT | TCT | AAG | TTG | ATT | GAT | TTA | TGC | TTT | ACA | AGT | GTG | TAT | GCT | GAC | ACA | TTC | TTG | ATA | AGA | TCT | TCA | GAA | GTA | AGA | CAA | GTT | GCA | CCG | GGT | GAA | ACT | GGT | GTC | ATT | GCT | GAC | TAT | AAT | TAC | AAG | CTG | CCT | GAT | GAT | TTT | ACT | GGT | TGC | GTA | ATA | GCC | TGG | AAT | ACT | GCA | AAG | CAG | GAT | CAA | GG- | --- | --- | --- | --- | --T | CAG | TAT | TAC | TAC | AGG | TCT | CAC | CGG | AAG | ACT | AAA | CTT | AAA | CCT | TTT | GAG | AGA | GAC | CTT | TCT | TCT | GAT | GA- | --A | AAT | GGT | GTA | CGT | ACT | CTT | AGT | AC- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --T | TAC | GAC | TTC | TAC | CCT | AGT | GTG | CCG | GTT | GCT | TAT | CAG | GCT | ACT | AGG | GTG | GTT | GTA | CTG | TCA | TTT | GAA | CTA | CTA | AAC | GCA | CCT | GCA | ACA | GTT | TGT | GGA | CCT | AAA | TTA | TCC | ACA | CAA | CTT | GTT | AAG | AAC | CAG | TGT | GTC | AAT | TTT | AAT | TTT | AAT | GGA | CTC | AAA | GGT | ACT | GGT | GTT | TTG | ACT | GAA | TCA | TCA | AAG | AGA | TTT | CAG | TCA | TTT | CAA | CAA | TTT | GGT | CGT | GAC | ACG | TCT | GAT | TTT | ACT | GAC | TCC | GTG | CGT | GAC | CCA | CAA | ACA | TTA | GAA | ATA | CTT | GAC | ATT | TCA | CCA | TGC | TCT | TTT | GGT | GGT | GTT | AGT | GTA | ATT | ACA | CCA | GGA | ACA | AAT | GCT | TCT | TCT | GAA | GTG | GCT | GTT | CTT | TAT | CAA | GAT | GTT | AAC | TGT | ACT | GAC | GTG | CCA | GCA | GCA | ATT | CAT | GCA | GAT | CAA | CTA | ACA | CCA | GCT | TGG | CGT | GTT | TAT | TCA | ACT | GGA | ACA | AAT | G------TT | TTC | CAA | ACA | CAG | GCT | GGC | TGT | CTT | ATA | GGA | GCT | GAA | CAT | GTT | AAT | GCT | TCG | TAT | GAG | TGT | GAC | ATC | CCT | ATT | GGT | GCT | GGC | ATT | TGT | GCT | AGC | TAC | CAT | ACA | GCT | TCT | ACT | T-- | --- | --- | --- | -TA | CGT | AGT | GTA | GGT | CAG | AAA | TCC | ATT | GTG | GCT | TAC | ACT | ATG | TCT | TTG | GGT | GCA | GAA | AAT | TCT | ATT | GCT | TAT | GCT | AAT | AAT | TCA | ATT | GCC | ATA | CCT | ACA | AAT | TTT | TCA | ATC | AGT | GTC | ACT | ACT | GAA | GTG | ATG | CCT | GTT | TCA | ATG | GCT | AAA | ACA | TCT | GTA | GAT | TGT | ACA | ATG | TAC | ATC | TGC | GGT | GAT | TCT | TTG | GAG | TGC | AGC | AAC | CTA | CTC | TTG | CAG | TAT | GGA | AGT | TTC | TGC | ACA | CAA | CTA | AAT | CGT | GCA | CTC | TCA | GGT | ATT | GCT | ATT | GAA | CAA | GAC | AAG | AAC | ACT | CAA | GAA | GTT | TTT | GCC | CAA | GTT | AAA | CAA | ATG | TAT | AAG | ACA | CCA | GCC | ATA | AAA | GAT | TTT | GGC | GGT | TTC | AAT | TTT | TCA | CAG | ATA | TTG | CCT | GAC | CCT | TCA | AAG | CCA | ACA | AAG | AGA | TCA | TTT | ATC | GAA | GAT | TTA | CTC | TTC | AAC | AAG | GTG | ACT | CTT | GCT | GAT | GCC | GGC | TTT | ATG | AAA | CAA | TAC | GGC | GAA | TGC | CTA | GGC | GAT | ATT | AGT | GCT | AGA | GAC | CTC | ATT | TGT | GCT | CAG | AAG | TTT | AAT | GGA | CTT | ACT | GTC | CTA | CCA | CCA | CTG | CTC | ACA | GAT | GAA | ATG | ATT | GCT | GCG | TAC | ACT | GCT | GCC | CTT | GTC | AGT | GGT | ACT | GCT | ACT | GCT | GGC | TGG | ACG | TTC | GGT | GCA | GGA | TCT | GCT | CTT | CAA | ATA | CCC | TTT | GCT | ATG | CAA | ATG | GCA | TAT | AGG | TTT | AAT | GGC | ATT | GGA | GTT | ACC | CAA | AAT | GTT | CTC | TAT | GAG | AAC | CAA | AAA | CAG | ATT | GCC | AAC | CAA | TTC | AAC | AAG | GCA | ATC | AGT | CAA | ATT | CAA | GAA | TCA | CTT | ACG | ACA | ACA | TCA | ACT | GCA | TTG | GGC | AAG | CTG | CAA | GAC | GTT | GTC | AAT | CAG | AAT | GCT | CAA | GCA | TTA | AAT | ACA | CTT | GTT | AAA | CAA | CTT | AGC | TCC | AAT | TTT | GGT | GCA | ATT | TCA | AGT | GTG | CTA | AAT | GAC | ATC | CTG | TCA | CGA | CTA | GAC | AAA | GTC | GAG | GCA | GAG | GTA | CAA | ATT | GAC | AGG | TTG | ATC | ACA | GGC | AGA | TTA | CAA | AGC | CTT | CAA | ACC | TAT | GTA | ACA | CAA | CAA | CTA | ATC | AGA | GCT | GCT | GAA | ATA | AGA | GCT | TCT | GCT | AAT | CTT | GCT | GCT | ACT | AAA | ATG | TCT | GAG | TGT | GTT | CTT | GGA | CAA | TCA | AAA | AGA | GTT | GAC | TTC | TGT | GGG | AAG | GGC | TAT | CAT | TTG | ATG | TCC | TTC | CCT | CAA | GCT | GCT | CCA | CAT | GGT | GTC | GTC | TTC | CTA | CAT | GTT | ACT | TAT | GTT | CCA | TCG | CAG | GAA | AGA | AAC | TTC | ACT | ACT | GCT | CCA | GCG | ATT | TGT | CAT | GAA | GGC | AAA | GCA | TAC | TTT | CCT | CGT | GAA | GGT | GTC | TTT | GTA | TCT | AAT | GGC | ACT | TCT | TGG | TTT | ATC | ACA | CAG | AGG | AAC | TTC | TAT | TCA | CCA | CAG | ATA | ATT | ACA | ACA | GAC | AAT | ACA | TTT | GTC | GCT | GGA | AGT | TGT | GAT | GTC | GTA | ATT | GGC | ATC | ATC | AAC | AAT | ACA | GTT | TAT | GAT | CCT | CTG | CAA | CCT | GAG | CTT | GAC | TCA | TTT | AAG | GAA | GAG | CTG | GAC | AAG | TAC | TTT | AAA | AAT | CAT | ACA | TCA | CCA | GAT | GTT | GAT | CTC | GGC | GAC | ATT | TCA | GGC | ATT | AAT | GCT | TCT | GTC | GTC | AAC | ATT | CAG | AAA | GAA | ATT | GAC | CGC | CTC | AAT | GAG | GTT | GCC | AAA | AAC | CTA | AAT | GAA | TCA | CTC | ATT | GAC | CTC | CAA | GAA | CTT | GGA | AAA | TAT | GAG | CAA | TAC | ATC | AAG | TGG | CCT | TGG | TAT | GTT | TGG | CTC | GGC | TTT | ATT | GCT | GGC | CTA | ATT | GCC | ATC | GTC | ATG | GTT | ACA | ATC | TTG | CTT | TGT | TGC | ATG | ACC | AGC | TGT | TGC | AGT | TGC | CTC | AAG | GGC | GCA | TGC | TCT | TGC | GGT | TCT | TGC | TGC | AAA | TTT | GAT | GAG | GAC | GAC | TCT | GAG | CCT | GTG | CTC | AAA | GGA | GTA | AAA | TTA | CAC | TAC | ACA | TAA |
KP886808_Bat_SARS_like_CoV_YNLF_31C | TTG | CTT | TCC | TAG | TTA | CTC | TAG | TTA | AAG | CAC | AAG | AAG | G---TT | GTG | GTG | TAA | TTA | ACC | TCA | GGA | C-- | ACA | ACC | TAA | ATT | ATC | --A | CAA | GTC | TCC | TCT | TCT | CGT | AGA | GGT | GTT | TAT | TAT | AAT | GAT | GAC | ATA | TTT | CGT | TCT | GAT | GTT | TTA | CAT | CTC | ACA | CAG | GAT | TAT | TTT | TTA | CCA | TTC | CAT | TCT | AAC | CTA | ACA | CAG | TAC | TTT | TCT | CTC | AGT | A-- | -TT | CAG | TCA | GAT | AAA | ATT | GTT | TAT | TTT | GAC | AAT | CCC | ATA | TTG | AAA | TTT | GGG | GAT | GGT | ATT | TAT | TTC | GCA | GCC | ACT | GAA | AAG | TCT | AAT | GTA | ATA | AGA | GGC | TGG | GTG | TTT | GGT | TCC | ACC | TTT | GAT | AAC | ACC | ACT | CAG | TCT | GCT | ATT | ATA | GTT | AAT | AAT | TCC | ACA | CAC | ATT | ATT | ATA | CGT | GTG | TGT | TAT | TTT | AAT | CTT | TGT | AAA | GAT | CCC | ATG | TAT | ACC | GTG | TCT | GCT | GGC | --- | --- | --- | --- | AC- | --- | -C- | CAA | ATA | TCT | TCA | TGG | GTT | TAT | CAG | AAT | GCT | TTT | AAT | TGC | ACA | TAT | GAT | AGA | GTG | GAA | AAA | AGC | TTC | CAA | TTA | GAC | ACA | GCC | C---CT | AAG | AGT | GGT | AAT | TTT | ATT | GCC | TTA | CGT | GAG | TTT | GTC | TTT | AAA | AAT | CGT | GAT | GGG | TTT | TTC | ACT | GTT | TAT | CAG | GAT | TAT | ACA | CCT | GTT | AAC | CTC | CTT | CGA | GG------------T | TTG | CCA | GCA | GGC | CTT | TCA | GTT | CTA | AAA | CCC | ATT | CTT | AAA | TTG | CCA | TTT | GGA | ATT | AAT | ATT | ACT | TCT | TTT | AGA | GTG | GTT | ATG | GCC | ATG | TTC | AGT | AAA | ACC | ACT | TC- | --- | --- | --- | --- | --- | --T | AAT | TAT | GTG | CCA | GAA | AGT | GCT | GCC | TAT | TAT | GTA | GGT | AAC | CTT | AAG | CAG | TCC | ACC | TTT | ATG | CTT | AGT | TTT | AAT | CAG | AAT | GGA | ACT | ATT | ACA | GAT | GCT | GTG | GAT | TGT | TCT | CAA | AAT | CCA | CTT | GCA | GAG | TTA | AAG | TGT | ACT | ACA | AAG | AGT | TTT | AAT | GTC | TCT | AAA | GGC | ATT | TAT | CAA | ACT | TCC | AAT | TTC | AGA | GTA | GCA | CCT | GTT | ACT | GAG | GTT | GTT | AGA | TTT | CCA | AAT | ATT | ACA | AAC | CTC | TGT | CCT | TTT | GAC | AAG | GTT | TTT | AAT | GCT | ACA | CGC | TTT | CCT | AGT | GTG | TAT | GCA | TGG | GAA | AGA | ACA | AAG | ATT | TCT | GAC | TGT | GTT | GCA | GAT | TAC | ACT | GTT | TTC | TAC | AAT | TCA--- | ACT | TCT | TTT | TCG | ACT | TTC | AAT | TGT | TAC | GGA | GTG | TCT | CCT | TCC | AAA | TTG | ATA | GAT | TTG | TGT | TTT | ACA | AGT | GTG | TAT | GCA | GAT | ACA | TTT | TTG | ATA | AGA | TTT | TCT | GAA | GTC | AGA | CAA | GTA | GCA | CCT | GGT | CAG | ACT | GGT | GTT | ATT | GCA | GAC | TAC | AAT | TAT | AAA | TTG | CCT | GAC | GAT | TTT | ACA | GGC | TGT | GTT | ATA | GCT | TGG | AAC | ACA | GCC | AAG | TAT | GAT | GTC | GG- | --- | --- | --- | --- | --T | AGT | TAT | TTT | TAT | AGG | TCT | CAT | CGT | TCG | AGT | AAA | TTA | AAA | CCG | TTT | GAG | AGA | GAC | CTG | TCA | TCA | GAA | GA- | --A | AAT | GGT | GCC | CGT | ACA | CTT | AGT | AC- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --T | TAT | GAT | TTT | AAC | CAA | AAT | GTA | CCC | CTT | GAA | TAT | CAA | GCC | ACT | AGA | GTT | GTT | GTT | CTC | TCA | TTT | GAA | CTC | CTT | AAT | GCA | CCT | GCT | ACA | GTG | TGC | GGA | CCA | AAA | TTA | TCC | ACT | TCA | CTA | GTC | AAG | AAC | CAG | TGC | GTT | AAC | TTC | AAC | TTT | AAT | GGA | TTT | AAA | GGT | ACT | GGT | GTT | TTG | ACT | GAC | TCG | TCT | AAA | ACG | TTT | CAG | TCA | TTT | CAA | CAA | TTT | GGT | CGG | GAT | GCA | TCT | GAT | TTT | ACT | GAC | TCA | GTG | CGT | GAC | CCG | AAA | ACT | TTA | CAG | ATA | CTT | GAC | ATT | TCA | CCA | TGT | TCT | TTT | GGT | GGT | GTA | AGT | GTC | ATA | ACA | CCT | GGA | ACT | AAC | ACT | TCA | TCC | GCA | GTG | GCT | GTT | CTT | TAC | CAA | GAT | GTA | AAC | TGC | ACT | GAT | GTT | CCC | AAA | ACA | ATA | CAT | GCA | GAT | CAA | TTA | GCA | CCC | TCT | TGG | CGT | GTT | TAC | ACC | AGT | GGA | CCC | TTT | G------TT | TTT | CAA | ACA | CAA | GCA | GGG | TGC | CTT | ATA | GGA | GCT | GAA | CAT | GTC | AAC | TCA | TCC | TAT | GAG | TGT | GAC | ATT | CCA | ATT | GGT | GCT | GGC | ATT | TGT | GCT | AGC | TAT | CAT | ACA | GCT | TCA | GTT | T-- | --- | --- | --- | -TA | CGA | AGT | ACA | GGT | CAA | AAA | TCT | ATT | GTG | GCC | TAT | ACT | ATG | TCA | TTA | GGT | GCT | GAA | AAT | TCT | GTG | GCA | TAT | GCT | AAT | AAT | TCA | ATT | GCC | ATA | CCT | ACT | AAT | TTT | TCT | ATT | AGT | GTC | ACT | ACT | GAA | GTG | ATG | CCT | GTT | TCT | ATG | GCT | AAA | ACA | TCT | GTC | GAT | TGT | ACT | ATG | TAC | ATC | TGT | GGT | GAT | TCT | GCA | GAG | TGC | AGC | AAC | TTA | CTG | CTT | CAG | TAT | GGT | AGT | TTC | TGT | ACT | CAA | CTC | AAT | CGT | GCC | CTT | TCT | GGC | ATT | GCT | GTA | GAA | CAG | GAC | AAA | AAC | ACC | CAA | GAG | GTG | TTC | GCC | CAG | GTT | AAA | CAG | ATG | TAT | AAA | ACA | CCA | ACC | CTA | AGA | GAT | TTT | GGT | GGA | TTT | AAT | TTC | TCT | CAG | ATA | TTA | CCA | GAC | CCT | TTG | AAA | CCC | ACT | AAG | CGT | TCT | TTT | ATA | GAG | GAC | TTG | CTC | TAT | AAT | AAA | GTT | ACA | CTC | GCG | GAT | GCA | GGT | TTC | ATG | AAA | CAG | TAC | GCA | GAC | TGT | TTG | GGT | GGT | ATT | AAC | GCT | AGA | GAT | CTC | ATC | TGT | GCT | CAA | AAG | TTT | AAT | GGA | CTT | ACA | GTC | CTA | CCA | CCT | TTG | CTC | ACT | GAT | GAT | ATG | ATT | GCT | GCC | TAT | ACT | GCA | GCG | CTC | ATT | AGT | GGC | ACC | GCT | ACC | GCA | GGC | TGG | ACT | TTT | GGT | GCG | GGT | GCT | GCT | CTT | CAA | ATA | CCT | TTT | GCT | ATG | CAA | ATG | GCT | TAT | AGG | TTT | AAT | GGC | ATT | GGA | GTT | ACC | CAA | AAT | GTT | CTC | TAT | GAG | AAC | CAA | AAA | CAA | ATT | GCC | AAT | CAG | TTC | AAT | AAG | GCT | ATT | ACT | CAA | ATT | CAA | GAA | TCA | CTT | ACA | ACC | ACA | TCA | ACA | GCA | TTG | GGC | AAG | CTG | CAA | GAC | GTT | GTC | AAC | CAG | AAT | GCT | CAA | GCA | TTA | AAT | ACA | CTT | GTT | AAA | CAA | CTT | AGC | TCC | AAT | TTT | GGT | GCT | ATT | TCA | AGT | GTT | TTA | AAT | GAC | ATC | CTC | TCA | CGA | CTT | GAC | AAA | GTT | GAG | GCA | GAG | GTG | CAA | ATT | GAC | AGG | TTG | ATT | ACA | GGC | AGA | TTA | CAA | AGT | CTG | CAA | ACC | TAT | GTG | ACA | CAA | CAA | CTA | ATC | AGA | GCT | GCT | GAA | ATC | AGA | GCT | TCT | GCC | AAC | CTT | GCT | GCT | ACT | AAA | ATG | TCT | GAG | TGT | GTT | CTT | GGA | CAA | TCA | AAA | AGA | GTT | GAT | TTC | TGT | GGA | AAG | GGC | TAC | CAC | TTG | ATG | TCC | TTC | CCT | CAA | GCC | GCT | CCT | CAT | GGT | GTT | GTC | TTC | CTA | CAT | GTC | ACA | TAT | GTG | CCA | TCT | CAG | GAG | AAA | AAT | TTC | ACC | ACG | GCC | CCA | GCG | ATT | TGC | CAT | GAA | GGC | AAA | GCA | TAC | TTC | CCT | CGC | GAA | GGT | GTT | TTT | GTG | TTT | AAT | GGC | ACT | TCT | TGG | TTC | ATT | ACA | CAG | AGG | AAC | TTC | TAT | TCA | CCA | CAA | ACA | ATT | ACA | ACA | GAT | AAT | ACA | TTT | GTT | GCT | GGA | AAT | TGT | GAT | GTC | GTA | ATT | GGC | ATC | ATT | AAC | AAC | ACA | GTT | TAC | GAT | CCT | CTG | CAA | CCT | GAG | CTT | GAC | TCA | TTC | AAA | GAA | GAG | CTG | GAT | AAG | TAC | TTC | AAA | AAT | CAC | ACA | TCA | CCA | GAT | GTT | GAT | CTT | GGC | GAC | ATC | TCG | GGC | ATT | AAT | GCT | TCT | GTC | GTC | AAT | ATT | CAA | AAA | GAA | ATT | GAC | CGC | CTC | AAT | GAG | GTC | GCC | AAA | AAT | CTA | AAT | GAT | TCG | CTC | ATT | GAC | CTT | CAA | GAA | CTT | GGC | AAA | TAT | GAG | CAA | TAT | ATT | AAA | TGG | CCT | TGG | TAT | GTC | TGG | CTT | GGC | TTT | ATA | GCA | GGG | TTA | GTA | GGA | TTA | TTT | ATG | GCC | ATC | ATT | CTT | CTT | TGT | TAT | TTT | ACT | AGC | TGC | TGC | AGC | TGC | TGT | AAA | GGC | ATG | TGT | TCC | TGT | GGT | TCT | TGC | TGC | AGA | TTT | GAT | GAA | GAC | GAC | TCT | GAG | CCA | GTG | CTC | AAA | GGA | GTC | AAA | TTA | CAT | TAT | ACA | TAA |
KJ473815_BtRs_BetaCoV_GX2013 | TTG | CTT | TCT | TGG | CTA | GTT | TAG | CTA | AAG | CAC | AGG | AAG | G---AT | GCG | GCA | TTA | TCA | GCA | GAA | AAC | C-- | ACA | ACC | TAA | AAT | GGC | --A | CAA | GTA | TCT | TCT | TCT | CGT | AGG | GGT | GTG | TAC | TAT | AAC | GAT | GAT | ATT | TTT | CGT | TCT | GAT | GTA | TTA | CAC | CTC | ACA | CAG | GAT | TAC | TTC | CTG | CCA | TTT | GAC | TCA | AAT | TTA | ACA | CAG | TAC | TTT | TCT | CTT | AAT | G-- | -TT | GAT | TCA | GAT | AGG | TAC | ACC | TAT | TTT | GAC | AAC | CCT | ATA | CTG | GAC | TTT | GGT | GAT | GGC | GTT | TAT | TTT | GCG | GCA | ACT | GAA | AAG | TCT | AAT | GTT | ATA | AGA | GGC | TGG | ATT | TTT | GGT | TCG | TCT | TTT | GAC | AAC | ACA | ACC | CAG | TCA | GCT | GTT | ATA | GTT | AAT | AAT | TCA | ACA | CAC | ATT | ATT | ATA | CGT | GTG | TGT | AAT | TTT | AAC | TTG | TGT | AAA | GAA | CCC | ATG | TAC | ACT | GTT | AGT | AGA | GGT | --- | --- | --- | --- | AC- | --- | -A- | CAA | CAG | AAT | TCT | TGG | GTT | TAT | CAA | AGT | GCA | TTT | AAT | TGC | ACC | TAT | GAC | AGA | GTG | GAG | AAG | AGC | TTT | CAG | CTT | GAC | ACA | GCT | C---CT | AAA | ACT | GGA | AAT | TTT | AAG | GAC | CTA | CGT | GAG | TAC | GTC | TTT | AAG | AAT | AGG | GAT | GGT | TTC | CTT | AGT | GTT | TAT | CAA | ACC | TAT | ACT | GCT | GTT | AAT | TTA | CCT | AGA | GG------------C | TTG | CCT | CAA | GGT | TTT | TCA | GTT | TTG | AGA | CCA | ATT | CTC | AAA | CTG | CCC | TTT | GGA | ATT | AAC | ATT | ACT | TCT | TAT | AGA | GTA | GTT | ATG | GCT | ATG | TTT | AGC | CAA | TCT | ACT | TC- | --- | --- | --- | --- | --- | --T | AAT | TTT | CTA | CCA | GAA | AGT | GCT | GCT | TAT | TAT | GTT | GGT | AAC | CTT | AAG | TAT | TCT | ACC | TTC | ATG | CTT | AGT | TTT | AAT | GAA | AAT | GGG | ACC | ATC | ACC | GAT | GCT | ATA | GAT | TGT | TCC | CAA | AAC | CCT | CTT | GCT | GAA | TTA | AAA | TGC | ACC | ATA | AAA | AAT | TTT | AAT | GTT | AAT | AAA | GGA | ATC | TAC | CAA | ACA | TCT | AAT | TTT | AGA | GTT | TCA | CCC | ACT | CAG | GAG | GTT | GTT | AGA | TTC | CCT | AAC | ATT | ACA | AAT | CGC | TGT | CCT | TTT | GAC | AAG | GTT | TTT | AAT | GCT | ACT | CGC | TTT | CCT | AAT | GTT | TAT | GCT | TGG | GAA | AGA | ACA | AAA | ATT | TCT | GAT | TGT | GTT | GCT | GAC | TAT | ACT | GTC | CTC | TAC | AAT | TCA--- | ACT | TCT | TTC | TCA | ACT | TTT | AAG | TGT | TAT | GGA | GTG | TCT | CCC | TCT | AAG | TTG | ATT | GAT | TTA | TGC | TTT | ACA | AGT | GTG | TAT | GCC | GAT | ACA | TTC | TTG | ATA | AGA | TCT | TCT | GAA | GTA | AGG | CAA | GTT | GCA | CCA | GGT | GAA | ACT | GGT | GTT | ATT | GCT | GAC | TAC | AAT | TAC | AAA | CTG | CCT | GAT | GAC | TTC | ACT | GGC | TGT | GTA | ATC | GCT | TGG | AAT | ACT | GCT | AAG | CAG | GAC | ACT | GG- | --- | --- | --- | --- | --C | AAT | TAT | TAT | TAC | AGA | TCG | CAT | CGC | AAG | ACT | AAA | TTA | AAG | CCT | TTT | GAG | AGA | GAT | CTG | TCT | TCC | GAT | GAT | GGT | AAT | GGT | GTA | TAC | ACA | CTT | TCA | AC- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --T | TAT | GAC | TTC | AAC | CCT | AAT | GTT | CCA | GTG | GCA | TAT | CAG | GCT | ACT | AGG | GTT | GTT | GTA | CTT | TCT | TTT | GAA | CTT | CTT | AAT | GCA | CCT | GCT | ACA | GTT | TGT | GGA | CCT | AAA | TTA | TCC | ACA | CAA | CTA | GTT | AAG | AAC | CAG | TGT | GTT | AAT | TTC | AAC | TTC | AAT | GGA | CTT | AAA | GGT | ACT | GGT | GTT | TTG | ACT | CCT | TCT | TTA | AAA | AGA | TTC | CAG | TCA | TTT | CAA | CAA | TTT | GGC | CGT | GAC | ACG | TCT | GAC | TTC | ACA | GAT | TCT | GTA | CGC | GAC | CCA | CAG | ACC | TTA | GAA | ATA | CTT | GAC | ATT | TCA | CCT | TGC | TCT | TTT | GGT | GGT | GTT | AGT | GTT | ATC | ACA | CCT | GGA | ACA | AAC | GCC | TCA | TCA | GAG | GTA | GCT | GTT | CTC | TAT | CAA | GAT | GTG | AAT | TGC | ACC | GAT | GTT | CCC | ACG | GCC | ATT | CGT | GCA | GAT | CAG | TTA | ACA | CCA | GCT | TGG | CGC | GTT | TAT | TCC | ACT | GGA | TTA | AAT | G------TG | TTT | CAG | ACG | CAA | GCC | GGC | TGT | CTT | ATT | GGA | GCT | GAG | CAT | GTC | AAT | GCC | TCT | TAT | GAG | TGT | GAC | ATT | CCT | ATT | GGT | GCA | GGC | ATT | TGT | GCT | AGT | TAC | CAT | ACA | GCT | TCT | GTT | C-- | --- | --- | --- | -TA | CGT | AGT | ACA | GGC | CAA | AAG | TCA | ATT | GTT | GCC | TAT | ACT | ATG | TCA | TTG | GGT | GCT | GAA | AAT | TCC | ATT | GCA | TAT | GCT | AAC | AAC | TCA | ATT | GCC | ATA | CCT | ACA | AAT | TTT | TCA | ATC | AGT | GTC | ACT | ACT | GAA | GTG | ATG | CCT | GTT | TCA | ATG | GCT | AAA | ACA | TCT | GTA | GAT | TGT | ACA | ATG | TAC | ATC | TGC | GGT | GAT | TCC | TTG | GAG | TGC | AGC | AAC | CTA | CTC | TTG | CAG | TAT | GGA | AGT | TTC | TGC | ACA | CAA | CTA | AAT | CGT | GCC | CTT | ACT | GGC | ATT | GCT | ATT | GAA | CAA | GAC | AAG | AAC | ACT | CAA | GAA | GTT | TTT | GCC | CAA | GTT | AAA | CAA | ATG | TAT | AAG | ACA | CCA | GCC | ATA | AAG | GAT | TTT | GGT | GGT | TTC | AAT | TTC | TCA | CAA | ATA | TTG | CCT | GAT | CCT | TCA | AAG | CCA | ACG | AAG | AGA | TCA | TTT | ATT | GAA | GAC | TTG | CTT | TTC | AAT | AAA | GTG | ACT | CTC | GCT | GAT | GCT | GGC | TTT | ATG | AAA | CAA | TAT | GGC | GAA | TGC | CTA | GGC | GAT | ATT | AGT | GCT | AGA | GAC | CTC | ATT | TGT | GCT | CAG | AAG | TTC | AAT | GGA | CTT | ACT | GTC | CTA | CCA | CCA | TTG | CTC | ACA | GAT | GAA | ATG | ATT | GCT | GCG | TAC | ACT | GCT | GCC | CTT | GTC | AGT | GGT | ACT | GCT | ACT | GCT | GGC | TGG | ACA | TTC | GGT | GCT | GGT | GCT | GCT | CTT | CAA | ATA | CCT | TTT | GCT | ATG | CAA | ATG | GCA | TAT | AGG | TTC | AAT | GGC | ATT | GGA | GTT | ACT | CAA | AAT | GTT | CTC | TAT | GAG | AAT | CAA | AAA | CAG | ATC | GCC | AAT | CAA | TTT | AAT | AAA | GCG | ATC | AGT | CAA | ATT | CAA | GAA | TCA | CTT | ACA | ACA | ACA | TCA | ACT | GCA | TTG | GGC | AAG | CTG | CAA | GAC | GTT | GTC | AAC | CAG | AAT | GCC | CAA | GCA | TTA | AAC | ACA | CTT | GTA | AAA | CAA | CTT | AGC | TCC | AAT | TTT | GGT | GCT | ATC | TCA | AGT | GTA | TTA | AAT | GAC | ATT | CTA | TCC | AGA | CTT | GAC | AAA | GTC | GAA | GCA | GAA | GTA | CAA | ATT | GAT | AGG | TTG | ATT | ACA | GGC | AGA | TTA | CAA | AGC | CTT | CAA | ACC | TAT | GTA | ACT | CAA | CAA | CTA | ATC | AGG | GCT | GCT | GAA | ATC | AGA | GCT | TCT | GCT | AAC | CTT | GCT | GCT | ACT | AAA | ATG | TCT | GAG | TGT | GTT | CTT | GGA | CAG | TCA | AAA | AGA | GTC | GAC | TTC | TGT | GGA | AAA | GGC | TAT | CAT | CTA | ATG | TCT | TTC | CCT | CAA | GCC | GCC | CCG | CAT | GGT | GTT | GTA | TTC | CTA | CAT | GTC | ACT | TAT | GTG | CCA | TCA | CAG | GAA | AGA | AAT | TTT | ACT | ACA | GCT | CCA | GCT | ATT | TGT | CAT | GAA | GGC | AAA | GCC | TAT | TTC | CCT | CGT | GAA | GGT | GTC | TTT | GTG | TCT | AAT | GGC | ACT | TCT | TGG | TTT | ATT | ACG | CAG | AGG | AAT | TTT | TAC | TCT | CCA | CAA | TTA | ATT | ACA | ACA | GAT | AAC | ACT | TTT | GTT | TCT | GGT | AAT | TGT | GAT | GTC | GTA | ATC | GGC | ATC | ATT | AAT | AAC | ACT | GTT | TAT | GAT | CCT | CTG | CAA | CCT | GAG | CTT | GAC | TCA | TTT | AAA | GAC | GAG | CTG | GAC | AAG | TAC | TTC | AAA | AAT | CAT | ACA | TCA | CCA | GAT | GTT | GAT | CTT | GGC | GAC | ATT | TCA | GGC | ATT | AAT | GCT | TCT | GTC | GTC | AAT | ATT | CAA | AAA | GAA | ATT | GAC | CGC | CTC | AAT | GAG | GTT | GCC | AAA | AAC | CTA | AAT | GAA | TCG | CTC | ATT | GAC | CTC | CAA | GAA | CTT | GGT | AAA | TAT | GAG | CAA | TAC | ATC | AAA | TGG | CCC | TGG | TAC | GTT | TGG | CTT | GGC | TTC | ATT | GCT | GGA | CTA | ATT | GCT | ATC | GTC | ATG | GCC | ACT | ATA | CTG | CTT | TGT | TGC | ATG | ACC | AGC | TGT | TGC | AGT | TGC | CTC | AAG | GGT | GCA | TGC | TCT | TGT | GGT | TCT | TGC | TGC | AAA | TTT | GAT | GAG | GAC | GAC | TCC | GAG | CCA | GTG | CTT | AAA | GGA | GTC | AAA | TTA | CAC | TAC | ACA | TAA |
KF569996_Rhinolophus_affinis_CoV_LYRa11 | TTA | GTC | TTT | TCT | GTG | TGT | CTG | GTG | ATT | CTA | TTG | ACA | C---CT | GTG | AAA | CTT | TTG | ATG | ATG | TCT | C-- | TCC | CCC | ACA | ACA | AAA | --T | TTA | GTT | TCA | TCG | TCT | AAA | CGT | GGT | GTT | TAT | TAC | CCT | GAT | GAT | ATA | TAC | CGT | TCA | GAT | GTT | CAC | CAC | TTG | GTA | CAA | GAT | CTT | TTT | CTT | CCA | TTC | AAC | TCT | AAC | GTT | GTT | GGA | CTC | ATG | TCC | TTC | AAC | T-- | -AT | AGA | TTT | GAT | AAT | --- | --- | --- | --- | --- | --- | CCC | ATT | ATT | CCT | TTC | AAA | GAT | GGT | GTC | TAT | TTC | GCA | GCC | ACT | GAA | AAG | TCT | AAT | GTA | GTG | AGA | GGT | TGG | GTC | TTT | GGT | TCT | ACA | ATG | AAC | AAC | AAA | TCC | CAG | TCC | GTT | ATA | ATT | ATG | AAC | AAC | TCC | ACC | AAT | GTT | GTT | ATA | AGA | GCA | TGT | AAT | TTT | CAA | TTA | TGT | GAC | AAC | CCA | TTT | TTT | GCT | GTC | ATT | AGA | CCC | --- | --- | --- | --- | ACT | TCG | CAG | CAG | ATA | GAA | ACG | ATA | TTA | TTT | GAA | AAT | GCC | TTC | AAT | TGC | ACT | TTC | GAG | TAT | GTG | TCG | GAT | TCT | TTT | CTT | ATG | GAT | GTT | GGT | G---AA | AAA | CCT | GGC | AAT | TTT | AAG | CAC | TTG | CGT | GAA | TTT | ATA | TTT | AAG | AAT | AAG | GAT | GGT | TTT | CTC | AAC | ATC | TAT | TCT | GGT | TTT | CAG | AAT | ATA | GAT | GTA | GCA | AAT | GG------------C | TTA | CCT | AGT | GGA | TTT | AGT | CTT | TTG | AAG | CCT | TTA | TTA | AAA | TTA | CCT | TTA | GGC | CTC | AAT | ATT | ACT | AAT | TTC | AGA | GTA | CTT | CTT | ACT | GCT | TTT | ATA | CCT | AAC | ATA | GG- | --- | --- | --- | --- | --- | --A | ACA | TGG | GGA | ACT | TCA | CCT | GTA | GCA | TAT | TTT | GTA | GGT | TAT | CTT | AAA | CCT | ACT | ACT | TTT | ATG | CTT | AAG | TAT | GAT | TAT | AAT | GGC | ACA | ATT | GTT | GAT | GCT | GTC | GAT | TGC | TCT | CAA | CAT | CCA | CTA | GCT | GAA | CTC | AAG | TGC | TCG | GTT | AAA | AGT | TTT | GAA | ATC | GAC | AAA | GGT | ATT | TAT | CAA | ACC | TCC | AAC | TTT | AGA | GTT | TCA | CCC | TCA | AAA | GAA | GTT | GTG | AGG | TTC | CCT | AAT | ATT | ACA | AAT | CTA | TGT | CCT | TTT | GGA | GAG | GTT | TTT | AAT | GCT | ACT | ACA | TTC | CCA | TCC | GTC | TAT | GCA | TGG | GAA | AGG | AAG | AGA | ATT | TCC | AAT | TGT | GTT | GCT | GAT | TAC | TCT | GTG | CTC | TAC | AAC | TCA--- | ACA | TCT | TTC | TCA | ACT | TTC | AAG | TGT | TAT | GGC | GTT | TCT | GCC | ATT | AAG | TTG | AAT | GAC | CTT | TGC | TTC | TCC | AAT | GTT | TAC | GCA | GAT | TCT | TTT | GTA | GTC | AAG | GGA | GAT | GAT | GTA | CGA | CAA | ATA | GCA | CCA | GGG | CAA | ACT | GGT | GTT | ATT | GCT | GAT | TAT | AAT | TAT | AAA | TTG | CCT | GAT | GAT | TTC | ATG | GGT | TGT | GTC | CTT | GCT | TGG | AAC | ACC | AGG | AAT | ATT | GAT | GCT | ACT | TCA | AGT | GGT | AAT | TTT | AAT | TAT | AAA | TAT | AGA | TCT | CTC | AGA | CAT | GGT | AAG | CTT | AGA | CCA | TTT | GAG | AGA | GAC | ATT | TCT | AAT | GTG | CCT | TTT | TCC | CCT | GAT | GGT | AAA | CCT | TGC | ACC | CCA | CCT | GC- | --T | TTC | AAT | TGT | TAT | TGG | CCA | TTA | AAT | GAT | TAC | GGT | TTT | TAT | ACC | ACT | AAT | GGC | ATA | GGT | TAC | CAA | CCT | TAT | AGA | GTT | GTA | GTC | TTG | TCT | TTT | GAA | CTT | CTA | AAC | GCA | CCT | GCT | ACA | GTC | TGT | GGA | CCA | AAA | TTG | TCC | ACT | GAC | CTT | ATT | ACA | AAC | CAG | TGT | GTC | AAT | TTT | AAT | TTT | AAT | GGA | CTC | ACT | GGT | ACT | GGT | GTT | TTA | ACT | CCT | TCT | TTA | AAG | AGA | TTT | CAA | CCA | TTT | CAG | CAA | TTT | GGT | CGT | GAT | TTT | TCA | GAT | TTT | ACT | GAT | TCA | GTT | CGA | GAT | CCG | AAG | ACA | CTT | GAA | GTA | TTG | GAC | ATC | TCA | CCC | TGT | TCT | TTT | GGT | GGT | GTG | AGT | GTA | ATT | ACA | CCT | GGA | ACC | AAT | ATT | TCA | TCT | GAA | GTG | GCT | GTT | CTC | TAT | CAA | GAT | GTT | AAC | TGC | ACT | GAC | GTG | CCT | ACA | GCT | ATT | CAT | GCA | GAC | CAA | CTC | ACC | CCT | GCT | TGG | CGT | ATT | TAC | TCT | GCA | GGA | GTA | AAT | G------TG | TTT | CAA | ACC | CAA | GCT | GGC | TGT | CTA | ATA | GGA | GCT | GAA | CAT | GTT | AAC | GCC | TCT | TAT | GAG | TGT | GAC | ATC | CCT | ATT | GGT | GCT | GGC | ATT | TGT | GCT | AGT | TAC | CAT | ACA | GCT | TCT | CTC | T-- | --- | --- | --- | -TA | CGT | AAT | ACA | GAC | CAG | AAA | TCA | ATT | GTG | GCC | TAT | ACT | ATG | TCA | CTT | GGT | GCA | GAA | AAT | TCA | ATT | GCT | TAT | GCT | AAT | AAT | TCA | ATT | GCC | ATA | CCT | ACA | AAT | TTT | TCT | ATA | AGC | ATC | ACC | ACT | GAA | GTG | ATG | CCT | GTT | TCA | ATG | GCT | AAG | ACA | TCC | GTG | GAT | TGT | ACA | ATG | TAC | ATT | TGC | GGT | GAC | TCT | CAG | GAG | TGC | AGT | AAC | CTA | CTA | CTT | CAG | TAT | GGT | AGC | TTT | TGC | ACA | CAA | TTA | AAT | CGT | GCA | CTT | TCA | GGC | ATT | GCT | GTT | GAA | CAA | GAC | AAA | AAC | ACT | CAA | GAG | GTT | TTT | GCC | CAA | GTT | AAA | CAA | ATT | TAT | AAG | ACA | CCA | GCT | ATA | AAA | GAT | TTT | GGT | GGC | TTT | AAC | TTC | TCA | CAA | ATA | TTG | CCT | GAC | CCT | TCT | AAG | CCA | ACA | AAA | AGA | TCA | TTT | ATT | GAG | GAT | TTA | CTC | TTC | AAT | AAA | GTG | ACT | CTT | GCT | GAT | GCT | GGC | TTC | ATG | AAG | CAA | TAT | GGA | GAA | TGC | CTA | GGC | GAT | ATT | AGT | GCT | AGA | GAC | CTC | ATT | TGT | GCG | CAA | AAG | TTT | AAT | GGA | CTT | ACT | GTC | CTT | CCA | CCT | TTG | CTC | ACT | GAC | GAA | ATG | ATT | GCT | GCC | TAC | ACA | GCT | GCA | CTA | GTC | AGC | GGT | ACT | GCT | ACT | GCT | GGC | TGG | ACA | TTT | GGT | GCG | GGT | GCT | GCT | CTT | CAA | ATA | CCC | TTT | GCT | ATG | CAA | ATG | GCT | TAT | AGG | TTT | AAT | GGC | ATT | GGA | GTT | ACC | CAA | AAC | GTT | CTC | TAT | GAG | AAT | CAG | AAG | CAG | ATC | GCT | AAT | CAA | TTT | AAT | AAG | GCG | ATC | AGC | CAA | ATT | CAA | GAA | TCT | CTT | ACC | ACA | ACA | TCA | ACT | GCT | TTG | GGC | AAG | CTG | CAG | GAC | GTT | GTC | AAT | CAG | AAT | GCT | CAA | GCA | TTG | AAT | ACA | CTT | GTT | AAA | CAA | CTA | AGC | TCC | AAC | TTT | GGT | GCG | ATT | TCA | AGT | GTT | TTA | AAT | GAC | ATT | CTG | TCA | CGA | CTT | GAC | AAA | GTT | GAG | GCA | GAA | GTG | CAA | ATT | GAT | AGG | TTG | ATT | ACT | GGC | AGA | TTA | CAA | AGC | CTT | CAG | ACC | TAT | GTA | ACA | CAA | CAA | CTA | ATC | AGA | GCT | GCT | GAA | ATC | AGA | GCT | TCT | GCT | AAC | CTT | GCT | GCT | ACT | AAA | ATG | TCT | GAG | TGT | GTT | CTT | GGA | CAA | TCA | AAA | AGA | GTT | GAC | TTT | TGT | GGA | AAA | GGA | TAC | CAT | CTC | ATG | TCT | TTC | CCT | CAA | GCA | GCC | CCG | CAT | GGT | GTC | GTC | TTC | CTA | CAT | GTT | ACA | TAT | GTG | CCA | TCT | CAG | GAG | AGG | AAC | TTC | ACC | ACT | GCA | CCT | GCC | ATT | TGT | CAT | GAA | GGC | AAG | GCA | TAC | TTC | CCT | CGT | GAA | GGT | GTC | TTT | GTA | TCT | AAT | GGC | ACT | TCT | TGG | TTT | ATC | ACA | CAG | AGG | AAT | TTC | TTT | TCA | CCA | CAA | TTA | ATT | ACA | ACA | GAC | AAT | ACA | TTT | GTC | TCG | GGA | AAT | TGT | GAT | GTC | GTC | ATT | GGC | ATC | ATC | AAC | AAT | ACT | GTT | TAC | GAT | CCT | CTG | CAA | CCT | GAG | CTT | GAC | TCG | TTT | AAA | GAA | GAG | CTG | GAT | AAG | TAC | TTC | AAA | AAT | CAC | ACA | TCA | CCT | GAT | GTG | GAT | CTT | GGC | GAC | ATT | TCA | CGC | ATT | AAT | GCT | TCA | GTC | GTC | AAC | ATT | CAA | AAA | GAA | ATT | GAC | CGC | CTC | AAT | GAG | GTT | GCC | AAA | AAT | CTA | AAT | GAG | TCG | CTC | ATT | GAT | CTC | CAG | GAA | CTT | GGA | AAA | TAT | GAG | CAA | TAT | ATT | AAA | TGG | CCT | TGG | TAC | GTT | TGG | CTT | GGC | TTT | ATT | GCT | GGA | CTG | ATT | GCT | ATC | GTT | ATG | GCC | ACT | ATT | CTG | CTT | TGT | TGC | ATG | ACC | AGC | TGT | TGC | AGT | TGC | CTC | AAG | GGT | GCT | TGC | TCT | TGT | GGT | TCT | TGC | TGC | AAA | TTC | GAT | GAA | GAC | GAC | TCT | GAG | CCT | GTG | CTC | AAA | GGA | GTC | AAA | TTA | CAT | TAC | ACA | TAA |
JX993988_Bat_CoV_Cp_Yunnan2011 | TTA | GTC | TGC | TTT | TTA | GTG | CTG | CTT | TAG | CCC | AGG | AAG | G---TT | GTG | GCT | TAT | TGA | GTT | TCA | AAC | C-- | ACA | ACC | TAA | GCT | GGC | --A | CAA | TTT | TCA | TCT | TCC | AAG | AGA | GGT | GTT | TAT | TAT | AAT | GAT | GAT | ATT | TTT | CGT | TCT | GAT | GTA | TTG | CAC | CTC | ACT | CAG | GAT | TAT | TTC | TTA | CCA | TTT | CAC | TCT | AAT | TTA | ACG | CAG | TAC | TTT | TCA | TTA | AAT | G-- | -TC | GAT | TCG | GAT | CGT | CAA | GTC | TAT | TTT | GAC | AAT | CCA | ACC | TTA | AAT | TTT | GGT | GAT | GGT | GTG | TAT | TTC | GCT | GCA | ACT | GAA | AAG | TCT | AAT | GTT | ATT | AGA | GGT | TGG | ATT | TTT | GGC | TCT | ACT | ATG | GAC | AAT | AGT | ACG | CAG | TCA | GCT | ATC | ATT | GTT | AAC | AAT | TCC | ACA | CAC | ATT | ATA | ATA | CGT | GTG | TGT | AAT | TTT | AAC | CTT | TGT | AAA | GAA | CCC | ATG | TTT | ACA | GTC | TCT | CGA | GGC | --- | --- | --- | --- | GT- | --- | -C- | CAT | TTT | AGT | TCT | TGG | GTT | TAT | CAA | AGT | GCA | TTC | AAT | TGC | ACA | TAT | GAC | AGA | GTC | GAG | AAA | AGC | TTT | CAG | CTT | GAC | ACG | GCT | C---CT | AAA | ACT | GGA | AAT | TTT | AAG | GAC | CTA | CGT | GAG | TAT | GTC | TTT | AAA | AAT | CGT | GAT | GGT | TTT | CTT | AGT | GTC | TAC | CAT | TCT | TAT | ACT | CCT | GTT | GAT | ATT | ATT | AGA | GG------------T | ATA | CCT | GTG | GGT | TTC | TCA | GTT | TTG | AAG | CCT | ATT | CTT | AAG | CTT | CCT | ATT | GGT | ATC | AAC | ATT | ACT | TCT | TTT | AAG | GTT | GTT | ATG | ACC | ATG | TAT | AGT | CAA | ACC | ACA | TC- | --- | --- | --- | --- | --- | --T | AAT | TTT | CTT | TCC | GAA | AGT | GCT | GCT | TAT | TAT | GTT | GGT | AAT | CTT | AAA | TAC | GTT | ACC | TTC | ATG | TTT | CAG | TTT | AAT | GAG | AAT | GGC | ACT | ATT | GCA | GAT | GCA | GTA | GAT | TGT | TCT | CAA | AAT | CCT | CTC | GCT | GAG | TTA | AAA | TGC | ACC | CTT | AAA | AAT | TTT | AAT | GTG | TCC | AAA | GGC | ATT | TAT | CAG | ACT | TCT | AAC | TTC | AGG | GTT | TCA | CCA | TCC | ACA | GAG | GTT | ATT | AGA | TTT | CCT | AAC | ATT | ACA | AAC | CGC | TGC | CCT | TTC | GAC | AGA | GTT | TTT | AAT | GCG | TCT | CGT | TTC | CCT | AGC | GTT | TAC | GCT | TGG | GAG | AGG | ACT | AAA | ATT | TCT | GAT | TGT | GTT | GCT | GAT | TAC | ACT | GTT | CTC | TAC | AAC | TCA--- | ACT | TCA | TTT | TCA | ACT | TTC | AAA | TGT | TAT | GGA | GTT | TCC | CCA | TCT | AAG | TTG | ATT | GAT | TTG | TGT | TTT | ACA | AGT | GTG | TAT | GCT | GAT | ACA | TTC | CTG | ATA | AGA | TTT | TCA | GAA | GTT | AGG | CAA | ATA | GCG | CCT | GGT | GAA | ACT | GGC | GTT | ATT | GCA | GAC | TAT | AAT | TAT | AAG | CTG | CCT | GAT | GAG | TTT | ACA | GGT | TGC | GTA | ATT | GCT | TGG | AAT | ACG | GCT | AAC | CAA | GAC | CGG | GG- | --- | --- | --- | --- | --T | CAG | TAT | TAT | TAC | AGA | TCA | TCT | AGA | AAG | ACT | AAG | CTT | AAA | CCT | TTT | GAG | AGA | GAC | CTG | TCT | TCT | GAT | GA- | --A | AAT | GGT | GTA | CGT | ACT | TTA | AGT | AC- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --C | TAT | GAT | TTT | TAT | CCT | TCA | GTA | CCA | CTT | GAA | TAC | CAA | GCT | ACT | AGA | GTA | GTG | GTA | CTT | TCA | TTT | GAG | CTT | CTA | AAT | GCA | CCT | GCC | ACA | GTG | TGT | GGA | CCA | AAA | TTG | TCC | ACA | TCA | CTA | ATT | AAG | AAC | CAG | TGT | GTC | AAT | TTT | AAT | TTC | AAT | GGA | CTC | AAG | GGT | ACT | GGT | GTG | TTG | ACT | GAC | TCG | TCC | AAA | AAG | TTT | CAG | TCT | TTT | CAA | CAA | TTT | GGA | AGG | GAT | GCA | TCT | GAT | TTT | ACT | GAC | TCA | GTA | CGC | GAC | CCT | CAG | ACA | CTT | CAA | ATA | CTT | GAC | ATT | TCA | CCA | TGC | TCA | TTT | GGT | GGT | GTG | AGT | GTA | ATA | ACA | CCA | GGA | ACA | AAT | GCT | TCA | TCT | GAA | GTA | GCC | GTT | CTA | TAC | CAA | GAT | GTA | AAC | TGC | ACT | GAT | GTT | CCC | ACG | GCC | ATA | CGT | GCT | GAC | CAA | CTC | ACA | CCT | GCT | TGG | CGT | GTT | TAC | TCT | GCT | GGA | GTA | AAT | G------TG | TTT | CAA | ACT | CAG | GCT | GGC | TGT | TTA | ATA | GGA | GCG | GAA | CAT | GTC | AAT | GCT | TCA | TAT | GAG | TGT | GAC | ATT | CCC | ATT | GGT | GCA | GGC | ATT | TGT | GCT | AGT | TAC | CAT | ACA | GCT | TCC | CTT | T-- | --- | --- | --- | -TA | CGT | AAT | ACA | GGC | CAG | AAA | TCA | ATT | GTG | GCC | TAT | ACT | ATG | TCA | CTT | GGT | GCT | GAA | AAC | TCA | ATT | GCT | TAT | GCT | AAT | AAC | TCA | ATT | GCC | ATA | CCT | ACA | AAT | TTT | TCA | ATC | AGT | GTC | ACA | ACT | GAA | GTG | ATG | CCT | GTT | TCA | ATG | GCT | AAG | ACA | TCA | GTA | GAT | TGT | ACA | ATG | TAC | ATC | TGT | GGT | GAC | TCC | CAG | GAG | TGC | AGC | AAC | TTA | CTA | CTT | CAG | TAT | GGT | AGC | TTT | TGC | ACA | CAA | TTA | AAT | CGT | GCC | CTT | TCA | GGC | ATT | GCT | GTT | GAA | CAG | GAC | AAA | AAC | ACT | CAA | GAG | GTT | TTT | GCC | CAA | GTT | AAA | CAA | ATG | TAT | AAG | ACA | CCA | GCC | ATA | AAA | GAT | TTT | GGT | GGC | TTT | AAT | TTC | TCA | CAA | ATA | TTG | CCT | GAC | CCT | TCT | AAG | CCA | ACA | AAA | AGA | TCA | TTT | ATT | GAG | GAT | TTA | CTC | TTC | AAC | AAA | GTG | ACT | CTC | GCT | GAT | GCT | GGC | TTT | ATG | AAG | CAA | TAC | GGC | GAA | TGC | CTA | GGC | GAT | ATT | AGT | GCT | AGA | GAT | CTC | ATT | TGT | GCG | CAG | AAG | TTC | AAT | GGA | CTC | ACT | GTC | CTT | CCA | CCT | CTA | CTC | ACG | GAT | GAA | ATG | ATT | GCT | GCT | TAC | ACC | GCC | GCT | CTT | GTC | AGC | GGT | ACT | GCT | ACT | GCT | GGT | TGG | ACA | TTT | GGT | GCA | GGT | GCT | GCT | CTA | CAA | ATA | CCT | TTT | GCT | ATG | CAA | ATG | GCT | TAT | AGG | TTC | AAT | GGC | ATT | GGA | GTT | ACT | CAA | AAT | GTT | CTC | TAT | GAG | AAC | CAG | AAG | CAG | ATC | GCT | AAC | CAA | TTT | AAC | AAG | GCG | ATC | AGT | CAA | ATT | CAA | GAA | TCA | CTT | ACT | ACT | ACT | TCA | ACT | GCA | TTG | GGC | AAG | CTG | CAA | GAC | GTC | GTC | AAC | CAG | AAT | GCT | CAA | GCA | TTG | AAC | ACA | CTT | GTT | AAA | CAA | CTA | AGT | TCT | AAC | TTT | GGT | GCA | ATT | TCA | AGT | GTT | TTA | AAT | GAC | ATT | CTG | TCT | CGA | CTT | GAC | AAA | GTT | GAG | GCT | GAA | GTG | CAA | ATT | GAT | AGG | TTG | ATT | ACT | GGC | AGA | TTA | CAA | AGC | CTT | CAG | ACC | TAT | GTA | ACA | CAA | CAA | CTA | ATC | AGA | GCT | GCT | GAA | ATC | AGA | GCT | TCT | GCC | AAT | CTT | GCT | GCC | ACT | AAG | ATG | TCC | GAG | TGT | GTT | CTT | GGA | CAA | TCA | AAA | AGA | GTT | GAC | TTT | TGT | GGA | AAA | GGC | TAT | CAT | CTT | ATG | TCT | TTC | CCT | CAA | GCA | GCC | CCA | CAT | GGT | GTC | GTC | TTC | TTA | CAT | GTC | ACA | TAC | GTG | CCA | TCG | CAA | GAA | AGA | AAC | TTC | ACC | ACT | GCC | CCA | GCA | ATC | TGT | CAT | CAA | GGC | AAG | GCA | TAC | TTC | CCT | CGT | GAA | GGT | GTT | TTT | GTA | TCT | AAT | GGC | ACT | TCT | TGG | TTT | ATC | ACA | CAG | AGG | AAT | TTC | TTT | TCA | CCA | CAA | ATA | ATT | ACA | ACA | GAC | AAT | ACA | TTT | GTC | TCT | GGA | AAT | TGT | GAT | GTC | GTT | ATA | GGC | ATC | ATT | AAC | AAC | ACA | GTC | TAT | GAT | CCT | CTG | CAA | CCT | GAG | CTA | GAC | TCA | TTT | AAA | GAA | GAA | CTG | GAC | AAG | TAC | TTC | AAA | AAT | CAT | ACA | TCA | CCA | GAT | GTT | GAC | CTT | GGC | GAC | ATT | TCA | GGC | ATC | AAT | GCT | TCT | GTC | GTC | AAT | ATC | CAA | AAA | GAA | ATT | GAC | CGC | CTC | AAT | GAG | GTT | GCC | AAA | AAT | CTA | AAT | GAA | TCG | CTC | ATT | GAC | CTT | CAA | GAA | CTT | GGT | AAA | TAT | GAG | CAA | TAC | ATC | AAA | TGG | CCT | TGG | TAC | GTT | TGG | CTC | GGC | TTC | ATT | GCT | GGA | CTG | ATT | GCT | ATC | GTC | ATG | GCC | ACC | ATA | CTG | CTT | TGT | TGC | ATG | ACC | AGC | TGT | TGC | AGT | TGC | CTC | AAG | GGT | GCA | TGC | TCT | TGC | GGT | TCT | TGC | TGC | AAA | TTT | GAT | GAG | GAC | GAC | TCT | GAG | CCC | GTG | CTC | AAA | GGA | GTC | AAA | TTA | CAC | TAC | ACA | TAA |
MK211374_CoV_BtRl_BetaCoV_SC2018 | --- | --- | TTT | TTC | TTT | CCT | CAG | CTA | CTG | CGC | AGG | AAG | G---TT | GTG | GTG | TGA | TAT | CCA | ACA | AAC | C-- | ACA | GCG | CAC | GTT | TGA | --C | CAA | TAC | TCT | TCT | ACT | CGT | AGA | GGT | GTT | TAT | TAT | AAT | GAT | GAT | ATC | TTT | AGG | TCA | GAT | GTG | CTA | CAT | CTC | ACC | CAG | GAT | TAT | TTC | TTA | CCT | TTT | AAC | AGT | AAC | GTT | ACT | AGG | TAC | TTA | TCT | CTG | AAT | G-- | -CA | GAT | CAA | AAC | CGG | CTC | GTC | TAC | TTT | GAT | AAC | CAA | GTA | GTG | CCA | TTT | TTA | GAT | GGT | ATT | TAC | TAC | GCT | GCC | ACG | GAA | CGC | TCC | AAC | GTT | ATC | CGT | GGC | TGG | ATT | TTT | GGT | TCG | ACT | TTT | GAC | AAT | AGG | TCT | CAA | TCT | GCT | ATT | ATA | GTA | AAT | AAC | TCT | ACA | CAC | ATT | CTT | GTG | AAG | GTG | TGT | AAC | TTT | ATT | ATT | TGT | AAG | GAG | CCT | ATG | TTT | ACT | GTG | TCT | CAA | AAT | --- | --- | --- | --- | AG- | --- | -A- | CAC | TTT | AAG | TCT | TGG | GTT | TAT | CAG | GAT | GCT | AGG | AAT | TGC | ACG | TAT | GAT | GTA | GCA | TAT | CCT | AGC | TTT | CAG | TTG | GAT | GTC | TCT | CTCAAT | AAC | AAT | GTT | AAT | TTC | AAA | CAT | TTG | CGA | GAG | TTC | GTC | TTT | AAA | AAC | GTT | GAT | GGC | TTC | TTG | AAG | GTT | TAT | TCT | TCT | TAT | GAA | CCG | ATC | AAC | GTT | CTC | AAT | GG------------C | ATA | CCT | AGT | GGT | TTT | TCC | GTA | CTT | AAA | CCA | GTA | ATG | AGT | TTA | CCA | TTA | GGT | ATC | AAC | ATT | ACG | GGA | GTT | CGT | GTT | GTT | ATG | ACT | ATG | TTT | AGT | AGT | ACA | CAG | CA- | --- | --- | --- | --- | --- | --G | AAC | TTC | CTC | ACT | GAA | AAT | GCC | GCT | TAT | TAT | ATT | GGT | TAT | CTC | AAA | CCA | AGA | ACT | TTT | ATG | TTA | CAA | TTC | AAC | ACT | AAT | GGC | ACT | ATT | GTC | AAT | GCT | GTG | GAT | TGT | TCT | CAG | GAT | CCA | CTT | TCT | GAG | TTA | AAG | TGC | ACA | CTT | AAA | AAT | TTT | AAT | GTT | ACC | AAA | GGA | ATC | TAC | CAA | ACA | TCA | AAC | TTC | AGA | GTT | TCA | CCA | ACT | CAA | GAA | GTT | GTT | AGA | TTT | CCA | AAC | ATT | ACA | AAC | CGC | TGT | CCA | TTT | GAC | AAA | GTT | TTT | AAT | GCT | TCT | AGG | TTT | CCC | TCT | GTG | TAT | GCA | TGG | GAG | AGA | ATT | AAG | ATT | TCT | GAT | TGT | GTT | GCT | GAT | TAC | ACC | GTC | CTC | TAC | AAC | TCA--- | ACC | TCT | TTC | TCA | ACT | TTT | AAG | TGT | TAT | GGA | GTT | TCT | CCC | TCT | AAG | TTG | ATT | GAT | TTG | TGC | TTT | ACA | AGT | GTG | TAT | GCA | GAT | ACA | TTC | TTG | ATA | AGG | TCT | TCA | GAA | GTA | AGA | CAA | GTA | GCG | CCA | GGT | GAA | ACA | GGT | GTC | ATT | GCT | GAC | TAT | AAT | TAT | AAG | CTG | CCA | GAT | GAT | TTT | ACT | GGC | TGT | GTA | ATA | GCC | TGG | AAT | ACT | GCT | AAG | CAG | GAT | ACT | GG- | --- | --- | --- | --- | --C | TCT | TAT | TAT | TAT | AGG | TCT | CAC | CGT | AAG | ACT | AAG | CTT | AAA | CCT | TTT | GAG | AGA | GAT | CTG | TCT | TCT | GAT | GAT | GGT | AAT | GGT | GTA | TAT | ACA | CTT | TCA | AC- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --T | TAT | GAC | TTC | AAC | CCT | AAT | GTA | CCG | GTG | GCA | TAT | CAG | GCT | ACT | AGA | GTT | GTT | GTT | CTT | TCA | TTT | GAA | CTC | TTA | AAT | GCG | CCT | GCT | ACA | GTT | TGT | GGA | CCT | AAA | CTA | TCC | ACA | CAA | CTT | GTT | AAG | AAT | CAG | TGT | GTC | AAT | TTC | AAT | TTT | AAT | GGA | CTC | ACT | GGT | ACT | GGT | GTG | TTA | ACT | CCT | TCT | TCA | AAG | AGA | TTT | CAA | CCA | TTT | CAA | CAA | TTT | GGT | CGT | GAT | GTT | TCG | GAT | TTC | ACT | GAT | TCA | GTT | CGA | GAT | CCT | AAA | ACG | TCT | GAA | ATA | TTA | GAC | ATT | TCA | CCT | TGC | TCT | TTT | GGC | GGT | GTA | AGT | GTA | ATT | ACA | CCC | GGA | ACA | AAT | ACT | TCA | TCA | GAG | GTG | GCT | GTT | CTT | TAC | CAA | GAT | GTG | AAC | TGC | ACC | GAT | GTC | CCC | ACG | GCC | ATT | CGT | GCA | GAT | CAA | TTA | ACA | CCA | GCG | TGG | CGC | ATT | TAC | TCC | ACT | GGA | TTA | AAT | G------TG | TTT | CAA | ACA | CAA | GCC | GGC | TGT | CTT | ATT | GGA | GCT | GAA | CAT | GTC | AAT | GCC | TCT | TAT | GAG | TGT | GAC | ATC | CCT | ATT | GGT | GCT | GGC | ATT | TGT | GCT | AGC | TAC | CAT | ACA | GCT | TCT | ACT | C-- | --- | --- | --- | -TA | CGT | AGT | ACA | GGT | CAA | AAG | TCC | ATT | GTT | GCT | TAT | ACT | ATG | TCT | TTG | GGT | GCT | GAA | AAT | TCT | ATT | GCA | TAT | GCT | AAT | AAC | TCA | ATT | GCC | ATA | CCT | ACA | AAT | TTT | TCA | ATT | AGT | GTC | ACT | ACT | GAA | GTG | ATG | CCT | GTT | TCA | ATG | TCT | AAA | ACA | TCA | GTA | GAT | TGT | ACA | ATG | TAC | ATC | TGC | GGT | GAT | TCT | CAG | GAG | TGC | AGT | AAC | CTA | CTT | CTT | CAG | TAC | GGA | AGT | TTC | TGC | ACG | CAA | CTA | AAT | CGT | GCC | CTT | ACG | GGC | ATT | GCT | ATA | GAA | CAG | GAC | AAA | AAC | ACT | CAG | GAG | GTT | TTT | GCC | CAA | GTT | AAA | CAA | ATG | TAC | AAG | ACA | CCA | GCC | ATA | AAG | GAT | TTT | GGT | GGT | TTC | AAT | TTT | TCA | CAA | ATA | TTG | CCT | GAT | CCT | TCT | AAG | CCA | ACG | AAG | AGA | TCA | TTT | ATT | GAA | GAC | TTA | CTT | TTC | AAC | AAA | GTG | ACT | CTC | GCT | GAT | GCT | GGC | TTT | ATG | AAG | CAA | TAT | GGC | GAA | TGC | CTA | GGT | GAT | ATT | AGT | GCT | AGA | GAC | CTC | ATC | TGT | GCA | CAA | AAG | TTC | AAT | GGA | CTT | ACT | GTC | CTA | CCA | CCT | TTA | CTC | ACG | GAT | GAC | ATG | ATT | GCT | GCG | TAC | ACT | GCT | GCC | CTT | GTC | AGT | GGT | ACT | GCT | ACT | GCT | GGC | TGG | ACC | TTC | GGT | GCT | GGT | GCT | GCT | CTT | CAA | ATA | CCT | TTT | GCT | ATG | CAA | ATG | GCA | TAT | AGG | TTC | AAT | GGC | ATT | GGA | GTT | ACT | CAA | AAC | GTT | CTC | TAT | GAG | AAT | CAA | AAA | CAG | ATC | GCC | AAT | CAA | TTC | AAC | AAA | GCG | ATC | AGT | CAA | ATT | CAA | GAA | TCA | CTT | ACA | ACA | ACA | TCA | ACT | GCA | TTG | GGC | AAG | CTG | CAA | GAC | GTT | GTC | AAC | CAG | AAT | GCT | CAA | GCA | CTT | AAC | ACA | CTT | GTC | AAA | CAA | CTT | AGT | TCC | AAC | TTT | GGT | GCT | ATT | TCA | AGT | GTT | TTA | AAT | GAT | ATT | CTT | TCA | CGA | CTT | GAT | AAA | GTC | GAA | GCA | GAG | GTG | CAA | ATT | GAT | AGG | TTG | ATA | ACA | GGC | AGA | TTA | CAG | AGC | CTT | CAA | ACC | TAT | GTA | ACA | CAA | CAA | CTA | ATC | AGA | GCT | GCA | GAA | ATC | AGA | GCT | TCT | GCT | AAT | CTT | GCT | GCT | ACT | AAA | ATG | TCT | GAG | TGT | GTT | CTT | GGA | CAA | TCA | AAA | AGA | GTT | GAC | TTC | TGT | GGA | AGA | GGC | TAT | CAT | CTT | ATG | TCT | TTC | CCT | CAA | GCT | GCT | CCA | CAT | GGT | GTT | GTC | TTC | CTG | CAT | GTT | ACT | TAT | GTT | CCG | TCG | CAG | GAA | AGA | AAC | TTC | ACC | ACA | GCC | CCA | GCG | ATT | TGT | CAT | GAA | GGC | AAA | GCA | TAC | TTT | CCT | CGT | GAA | GGT | GTC | TTT | GTA | TCT | AAT | GGC | ACT | TCG | TGG | TTT | ATC | ACA | CAG | AGG | AAT | TTT | TAC | TCA | CCA | CAA | ATA | ATC | ACA | ACA | GAT | AAT | ACA | TTT | GTT | GCT | GGA | AAC | TGT | GAT | GTC | GTA | ATT | GGC | ATC | ATT | AAC | AAC | ACA | GTC | TAC | GAT | CCT | CTG | CAA | CCT | GAG | CTT | GAC | TCA | TTT | AAA | GAA | GAG | CTG | GAC | AAG | TAC | TTC | AAA | AAT | CAC | ACA | TCA | CCT | GAT | GTT | GAT | CTT | GGC | GAC | ATT | TCA | GGC | ATT | AAT | GCT | TCT | GTC | GTC | AAT | ATT | CAA | AAA | GAA | ATT | GAC | CGC | CTC | AAT | GAG | GTT | GCC | AAA | AAT | CTA | AAT | GAA | TCG | CTC | ATT | GAC | CTT | CAA | GAA | CTT | GGT | AAA | TAT | GAG | CAA | TAC | ATC | AAA | TGG | CCC | TGG | TAC | GTT | TGG | CTT | GGC | TTC | ATT | GCC | GGA | CTG | ATT | GCT | ATC | GTC | ATG | GCC | ACT | ATA | CTG | CTT | TGT | TGC | ATG | ACC | AGT | TGT | TGC | AGT | TGC | CTC | AAG | GGT | GCA | TGC | TCT | TGT | GGT | TCT | TGC | TGC | AAA | TTT | GAT | GAG | GAT | GAC | TCT | GAG | CCT | GTG | CTT | AAG | GGA | GTC | AAA | TTA | CAT | TAC | ACA | TAA |
KJ473814_BtRs_BetaCoV_HuB2013 | TTC | TTT | TTC | TTT | CTT | CTG | CCG | CT- | --G | CAC | AAG | AAG | G---TT | GTG | GTG | TTA | TCT | CCA | ATA | AAC | C-- | ACA | GCG | CAC | GTT | TGA | --T | CAG | TAC | TCC | TCT | ACT | CGT | AGG | GGT | GTT | TAC | TAT | AAT | GAT | GAC | ATC | TTT | AGA | TCA | GAC | GTG | CTG | CAT | CTC | ACC | CAA | GAC | TAC | TTT | CTT | CCT | TTT | AAC | ACT | AAT | GTT | ACT | AGG | TAT | CTG | TCT | TTG | AAT | G-- | -CA | GCG | CAA | AAC | ACC | ATT | GTC | TAC | TTT | GAC | AAT | CAT | GTA | ATA | CCT | TTC | TAT | GAC | GGC | ATT | TAT | TTT | GCC | GCC | ACA | GAG | CGG | TCT | AAT | GTT | ATT | CGT | GGC | TGG | ATC | TTT | GGT | TCA | ACT | TTT | GAC | AAC | CGC | TCG | CAG | TCT | GCT | ATT | ATA | GTG | AAC | AAT | TCT | ACA | CAC | ATT | TTA | GTT | AAG | GTG | TGT | AAT | TTT | GTT | TTA | TGC | ACT | GAA | CCC | ATG | TTT | ACG | GTG | TCG | CGT | --- | --- | --- | --- | --- | --- | AAC | CAA | CAC | TAT | AAA | TCT | TGG | GTC | TAT | CAG | CAT | GCT | AGA | AAT | TGT | ACA | TAT | GAT | GTT | GCA | TAT | CCT | AGC | TTT | CAA | TTA | GAT | GTC | TCC | TTAAAG | AAT | AAT | GTC | AAT | TTT | CGA | CAT | CTT | CGT | GAG | TTC | ATT | TTT | AAG | AAT | GTT | GAT | GGT | TTC | CTT | AAG | ATA | TAT | TCT | TCA | TAT | GAA | CCT | ATC | AAT | GTT | GTT | AGT | GG------------C | ATA | CCT | AGT | GGT | TTT | TCA | GTG | TTA | AAG | CCA | ATT | ATG | AGC | CTC | CCA | CTA | GGT | ATT | AAC | ATT | ACT | GGC | ATG | CGC | GTT | GTT | ATG | ACA | ATG | TTT | AGC | AAC | ACC | CAG | GC- | --- | --- | --- | --- | --- | --C | AAC | TTT | CTC | ACT | GAA | AAT | GCT | GCA | TAT | TAT | GTA | GGC | TAT | CTT | AAG | CCT | AGA | ACA | TTT | ATG | TTA | CAA | TTT | AAT | AGC | AAT | GGC | ACA | ATT | GTT | AAT | GCT | GTT | GAT | TGT | TCT | CAG | GAT | CCT | CTT | TCT | GAG | TTA | AAG | TGC | ACA | CTT | AAA | AAT | TTT | AAT | GTT | ACT | AAA | GGA | ATC | TAC | CAA | ACG | TCT | AAC | TTC | AGA | GTT | ACA | CCA | ACG | CAG | GAG | GTT | GTT | AGA | TTC | CCA | AAT | ATT | ACA | AAC | CGC | TGC | CCA | TTT | GAC | AGG | GTT | TTT | AAT | GCT | TCC | AGG | TTT | CCC | TCT | GTG | TAT | GCA | TGG | GAA | AGA | ACA | AAA | ATT | TCT | GAT | TGT | GTT | GCT | GAC | TAC | ACT | GTT | CTC | TAC | AAC | TCA--- | ACC | TCT | TTC | TCA | ACT | TTC | AAA | TGT | TAT | GGA | GTT | TCT | CCC | TCT | AAG | TTG | ATT | GAT | CTA | TGC | TTC | ACA | AGC | GTG | TAT | GCA | GAT | ACA | TTC | TTG | ATA | AGA | TCT | TCA | GAA | GTG | AGA | CAA | GTA | GCG | CCA | GGT | GAG | ACT | GGT | GTT | ATT | GCT | GAC | TAC | AAT | TAT | AAG | CTG | CCT | GAT | GAT | TTC | ACA | GGT | TGT | GTG | ATT | GCT | TGG | AAC | A-- | --- | --- | --- | --- | -CT | GCT | AAA | CAG | GAT | ACA | GGC | TAT | TAT | TAT | TAC | AGG | TCC | CAC | CGC | AAG | ACT | AAG | CTT | AAG | CCT | TTT | GAG | AGA | GAT | TTG | TCG | TCT | G-- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | -AT | GA- | --T | GGT | AAT | GGT | GTA | TAC | ACT | CTT | AGT | ACT | TAT | GAC | TTC | AAT | CCT | AAT | GTA | CCT | GTT | GCT | TAC | CAA | GCT | ACC | AGG | GTT | GTT | GTA | CTT | TCA | TTT | GAA | CTT | CTT | AAT | GCA | CCT | GCC | ACA | GTT | TGT | GGA | CCT | AAA | TTA | TCC | ACA | GAA | CTT | GTT | AAA | AAC | CAG | TGT | GTA | AAC | TTC | AAC | TTC | AAT | GGA | CTT | AAG | GGC | ACT | GGT | GTT | TTG | ACT | AAG | TCT | TCT | AAA | AGA | TTT | CAG | TCA | TTT | CAA | CAA | TTT | GGT | CGT | GAC | ACG | TCT | GAC | TTC | ACT | GAT | TCA | GTA | CGT | GAT | CCA | CAA | ACA | TTA | GAA | ATA | CTT | GAC | ATT | TCA | CCA | TGT | TCT | TTT | GGT | GGT | GTT | AGT | GTG | ATT | ACA | CCA | GGA | ACA | AAT | GCT | TCT | TCT | GAA | GTT | GCT | GTT | CTT | TAC | CAA | GAT | GTT | AAC | TGC | ACT | GAT | GTT | CCA | ACA | GCA | ATT | CAT | GCA | GAC | CAA | CTA | ACA | CCA | GCT | TGG | CGT | GTT | TAT | TCC | ACT | GGA | GTA | AAT | G------TG | TTT | CAA | ACT | CAA | GCT | GGC | TGT | CTC | ATA | GGA | GCT | GAA | CAT | GTT | AAC | GCT | TCA | TAT | GAG | TGT | GAC | ATC | CCA | ATT | GGT | GCT | GGC | ATT | TGT | GCT | AGT | TAC | CAT | ACA | GCT | TCA | GTC | T-- | --- | --- | --- | -TA | CGC | AGT | ACA | GGC | CAG | AAA | TCA | ATT | GTG | GCT | TAT | ACT | ATG | TCT | TTG | GGT | GCT | GAG | AAC | TCA | ATT | GCT | TAT | GCT | AAT | AAT | TCA | ATT | GCC | ATA | CCT | ACA | AAT | TTT | TCA | ATC | AGT | GTC | ACT | ACT | GAA | GTG | ATG | CCT | GTT | TCA | ATG | ACT | AAA | ACA | TCC | GTG | GAT | TGT | ACG | ATG | TAC | ATC | TGC | GGT | GAT | TCA | TTG | GAG | TGC | AGT | AAT | CTA | CTC | TTG | CAG | TAT | GGA | AGC | TTC | TGC | ACA | CAA | TTA | AAT | CGT | GCC | CTT | ACA | GGC | ATA | GCA | ATA | GAA | CAG | GAC | AAA | AAC | ACA | CAA | GAG | GTC | TTT | GCC | CAA | GTT | AAA | CAA | ATG | TAC | AAG | ACA | CCA | GCC | ATA | AAA | GAT | TTT | GGC | GGT | TTC | AAT | TTT | TCA | CAA | ATA | TTG | CCT | GAT | CCT | TCA | AAG | CCA | ACA | AAG | AGG | TCA | TTC | ATT | GAG | GAC | CTG | CTC | TTC | AAC | AAA | GTG | ACT | CTC | GCT | GAT | GCT | GGC | TTT | ATG | AAA | CAA | TAT | GGC | GAA | TGC | CTA | GGC | GAT | ATT | AGT | GCT | AGA | GAC | CTC | ATT | TGT | GCT | CAA | AAA | TTC | AAT | GGA | TTG | ACT | GTT | CTA | CCA | CCA | TTG | CTC | ACA | GAT | GAA | ATG | ATT | GCT | GCC | TAC | ACG | GCT | GCA | CTA | GTT | AGC | GGT | ACT | GCT | ACT | GCT | GGC | TGG | ACA | TTT | GGT | GCA | GGT | GCT | GCC | CTT | CAA | ATC | CCC | TTT | GCT | ATG | CAA | ATG | GCA | TAT | AGG | TTC | AAT | GGC | ATT | GGA | GTT | ACC | CAA | AAT | GTT | CTC | TAT | GAG | AAC | CAA | AAA | CAG | ATC | GCC | AAC | CAA | TTC | AAT | AAG | GCG | ATC | AGT | CAA | ATT | CAA | GAA | TCA | CTC | ACA | ACA | ACA | TCA | ACA | GCA | TTG | GGC | AAG | CTG | CAA | GAC | GTT | GTC | AAC | CAG | AAT | GCT | CAA | GCA | TTG | AAT | ACA | CTT | GTT | AAA | CAA | CTT | AGC | TCC | AAT | TTT | GGT | GCT | ATT | TCG | AGT | GTT | CTA | AAC | GAC | ATT | CTT | TCA | CGA | CTC | GAC | AAA | GTC | GAG | GCA | GAA | GTA | CAA | ATT | GAT | AGG | TTG | ATT | ACA | GGC | AGA | TTA | CAG | AGC | CTC | CAA | ACC | TAT | GTA | ACA | CAA | CAA | CTA | ATC | AGA | GCT | GCT | GAA | ATC | AGG | GCC | TCT | GCT | AAC | CTT | GCT | GCT | ACT | AAA | ATG | TCT | GAG | TGT | GTT | CTT | GGA | CAA | TCA | AAA | AGA | GTT | GAC | TTC | TGT | GGA | AAA | GGC | TAT | CAT | TTA | ATG | TCT | TTC | CCC | CAA | GCG | GCT | CCG | CAT | GGT | GTT | GTC | TTC | CTA | CAT | GTC | ACT | TAT | GTG | CCA | TCA | CAG | GAA | AGA | AAC | TTC | ACT | ACT | GCC | CCA | GCA | ATT | TGT | CAT | GAA | GGC | AAA | GCA | TAC | TTC | CCT | CGC | GAA | GGT | GTT | TTT | GTA | TCT | AAT | GGC | ACT | TCT | TGG | TTC | ATT | ACA | CAG | AGG | AAT | TTT | TAC | TCA | CCA | CAG | ATA | ATT | ACA | ACA | GAC | AAT | ACA | TTT | GTC | GCA | GGA | AAT | TGT | GAC | GTC | GTA | ATT | GGC | ATC | ATC | AAT | AAC | ACA | GTT | TAT | GAT | CCT | CTG | CAA | CCT | GAG | CTT | GAC | TCA | TTC | AAA | GAA | GAG | CTG | GAC | AAG | TAC | TTC | AAA | AAT | CAT | ACA | TCA | CCA | GAT | GTT | GAT | CTC | GGC | GAC | ATT | TCA | GGT | ATT | AAT | GCT | TCT | GTC | GTC | AAC | ATT | CAA | AAA | GAA | ATT | GAC | CGC | CTC | AAT | GAG | GTC | GCC | AAA | AAT | CTA | AAT | GAA | TCA | CTC | ATT | GAC | CTC | CAA | GAA | CTT | GGA | AAA | TAT | GAG | CAA | TAC | ATC | AAA | TGG | CCT | TGG | TAT | GTT | TGG | CTC | GGC | TTC | ATC | GCT | GGA | CTA | ATT | GCC | ATC | GTC | ATG | GTT | ACA | ATC | TTG | CTT | TGT | TGC | ATG | ACC | AGC | TGT | TGC | AGT | TGC | CTC | AGG | GGT | GCA | TGC | TCT | TGC | GGT | TCT | TGC | TGC | AAA | TTT | GAT | GAG | GAC | GAC | TCT | GAG | CCA | GTG | CTC | AAA | GGA | GTC | AAA | TTA | CAC | TAC | ACA | TAA |
DQ412043_Bat_SARS_CoV_Rm1 | TTG | CTC | TGC | TCT | TCA | GTC | TAG | CTA | AAG | CAC | AGG | AAG | G---AT | GTG | GCA | TTA | TTA | GTA | GAA | AGC | C-- | ACA | GCC | AAA | GAT | GGA | --A | AAA | GTC | TCA | TCC | TCT | CGG | CGA | GGT | GTG | TAT | TAT | AAT | GAT | GAC | ATT | TTT | CGT | TCT | GAT | GTT | TTA | CAC | CTC | ACT | CAA | GAC | TAT | TTT | TTG | CCC | TTT | GAC | TCA | AAT | TTA | ACA | CAG | TAC | TTT | TCT | TTG | AAT | A-- | -TT | GAT | TCA | AAT | AAG | TAT | ACT | TAT | TTT | GAC | AAT | CCT | ATA | TTG | GAC | TTT | GGT | GAT | GGT | GTC | TAT | TTT | GCC | GCC | ACG | GAA | AAG | TCT | AAT | GTT | ATA | AGA | GGC | TGG | ATT | TTT | GGT | TCA | TCG | TTT | GAC | AAC | ACA | ACC | CAG | TCC | GCT | ATT | ATA | GTT | AAT | AAT | TCC | ACA | CAC | ATT | ATC | ATA | CGT | GTG | TGT | AAC | TTT | AAC | TTA | TGT | AAA | GAA | CCC | ATG | TAC | ACT | GTG | TCA | AAA | --- | --- | --- | --- | --- | --- | GGC | ACA | CAA | CAA | TCA | TCT | TGG | GTT | TAT | CAG | AGT | GCA | TTT | AAT | TGC | ACA | TAT | GAT | AGA | GTA | GAG | AAA | AGT | TTT | CAA | CT- | --T | GAC | ACT | GCTCCT | AAA | ACT | GGA | AAC | TTT | AAA | GAC | CTA | CGT | GAG | TAT | GTC | TTT | AAG | AAT | AAG | GGA | GGC | TTT | CTT | AGA | GTT | TAC | CAA | ACC | TAT | ACT | GCT | GTT | AAT | TTA | CCT | AGG | GG------------C | TTT | CCA | GCA | GGT | TTT | TCA | GTT | TTG | AGA | CCA | ATT | CTC | AAA | CTC | CCT | TTT | GGA | ATT | AAC | ATT | ACT | TCT | TAT | AGA | GTG | GTT | ATG | ACT | ATG | TTT | AGC | CAA | TTC | AAC | TC- | --- | --- | --- | --- | --- | --T | AAT | TTC | TTA | CCA | GAG | AGT | GCT | GCT | TAT | TAT | GTT | GGT | AAT | TTA | AAA | TAT | ACT | ACA | TTC | ATG | CTT | AGT | TTC | AAT | GAG | AAT | GGG | ACT | ATC | ACA | GAT | GCT | GTT | GAT | TGT | TCC | CAA | AAT | CCG | CTT | GCC | GAA | TTA | AAA | TGC | ACC | ATC | AAA | AAT | TTT | AAT | GTC | AGT | AAA | GGA | ATC | TAT | CAA | ACA | TCT | AAC | TTC | AGA | GTC | ACA | CCG | ACT | CAA | GAG | GTT | GTT | AGG | TTT | CCA | AAC | ATT | ACT | AAC | CGA | TGT | CCA | TTT | GAC | AAG | GTT | TTT | AAT | GCA | TCT | CGC | TTT | CCC | AAC | GTT | TAT | GCA | TGG | GAA | AGA | ACA | AAA | ATT | TCT | GAT | TGT | GTT | GCT | GAT | TAC | ACT | GTT | CTC | TAC | AAC | TCG--- | ACC | TCT | TTC | TCA | ACT | TTT | AAA | TGT | TAT | GGA | GTT | TCT | CCT | TCT | AAG | TTG | ATT | GAT | CTA | TGC | TTT | ACA | AGT | GTG | TAT | GCA | GAT | ACA | TTC | TTG | ATA | AGA | TCT | TCA | GAA | GTG | AGA | CAA | GTA | GCA | CCA | GGT | GAA | ACT | GGT | GTT | ATT | GCT | GAT | TAC | AAC | TAC | AAA | TTA | CCT | GAT | GAT | TTT | ACA | GGC | TGT | GTA | ATA | GCT | TGG | AAT | A-- | --- | --- | --- | --- | -CT | GCA | CAA | CAG | GAC | CAA | GGT | CAA | TAT | TAC | TAC | AGA | TCT | TAC | AGA | AAG | GAA | AAA | CTC | AAA | CCT | TTT | GAG | AGG | GAT | TTG | TCA | TCT | G-- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | -AT | GA- | --- | --A | AAT | GGT | GTG | TAC | ACT | CTT | AGT | ACT | TAT | GAC | TTC | TAC | CCT | AGT | ATC | CCA | GTT | GAA | TAC | CAG | GCA | ACT | AGG | GTT | GTT | GTA | CTC | TCC | TTT | GAA | CTT | TTA | AAT | GCA | CCT | GCA | ACA | GTT | TGT | GGA | CCT | AAA | TTG | TCC | ACT | CAA | CTT | GTT | AAG | AAT | CAA | TGT | GTC | AAT | TTT | AAC | TTT | AAT | GGA | CTC | AGG | GGT | ACT | GGT | GTG | CTG | ACC | ACT | TCA | TCT | AAG | AGG | TTC | CAG | TCA | TTC | CAG | CAA | TTT | GGC | AGA | GAC | ACG | TCT | GAC | TTC | ACT | GAC | TCA | GTA | CGT | GAT | CCA | CAA | ACA | TTA | GAA | ATA | CTT | GAC | ATT | TCA | CCA | TGT | TCT | TTT | GGT | GGT | GTT | AGT | GTA | ATT | ACA | CCA | GGA | ACA | AAT | GCT | TCT | TCT | GAA | GTT | GCT | GTT | CTT | TAC | CAA | GAT | GTT | AAC | TGT | ACT | GAT | GTG | CCA | ACA | TCA | ATT | CAT | GCA | GAT | CAA | CTA | ACA | CCT | GCT | TGG | CGT | GTT | TAT | TCA | ACT | GGA | GTA | AAT | G------TG | TTT | CAA | ACA | CAA | GCT | GGC | TGT | CTT | ATT | GGA | GCT | GAA | CAT | GTC | AAT | GCT | TCA | TAT | GAG | TGT | GAC | ATT | CCT | ATT | GGT | GCT | GGC | ATT | TGT | GCT | AGC | TAC | CAT | ACA | GCT | TCA | GTG | T-- | --- | --- | --- | -TA | CGT | AGT | ACA | GGT | CAG | AAA | TCC | ATT | GTG | GCT | TAT | ACT | ATG | TCT | TTG | GGT | GCT | GAA | AAC | TCA | ATC | GCT | TAT | GCT | AAT | AAT | TCA | ATT | GCC | ATA | CCT | ACA | AAT | TTC | TCA | ATA | AGC | GTC | ACA | ACT | GAA | GTG | ATG | CCT | GTT | TCA | ATA | GCT | AAA | ACA | TCT | GTA | GAT | TGT | ACA | ATG | TAC | ATC | TGT | GGT | GAT | TCT | TTG | GAG | TGC | AGC | AAC | CTA | CTC | TTG | CAG | TAT | GGA | AGC | TTC | TGC | ACA | CAA | CTA | AAC | CGT | GCC | TTG | ACT | GGC | ATT | GCT | ATT | GAA | CAG | GAC | AAG | AAC | ACG | CAG | GAA | GTT | TTT | GCC | CAA | GTT | AAA | CAA | ATG | TAT | AAG | ACA | CCT | GCC | ATA | AAA | GAT | TTT | GGC | GGT | TTC | AAT | TTC | TCA | CAA | ATA | TTG | CCT | GAC | CCT | TCA | AAG | CCA | ACA | AAG | AGA | TCA | TTT | ATT | GAA | GAT | TTA | CTC | TTC | AAC | AAA | GTG | ACT | CTT | GCT | GAT | GCT | GGC | TTT | ATG | AAA | CAA | TAT | GGC | GAA | TGC | CTA | GGC | GAT | ATT | AGT | GCT | AGA | GAC | CTC | ATT | TGT | GCT | CAA | AAG | TTT | AAT | GGA | CTT | ACT | GTC | CTA | CCA | CCA | TTG | CTC | ACA | GAT | GAA | ATG | ATT | GCT | GCG | TAC | ACC | GCT | GCC | CTT | GTC | AGT | GGT | ACT | GCT | ACT | GCT | GGC | TGG | ACG | TTC | GGT | GCA | GGA | TCT | GCT | CTT | CAA | ATA | CCC | TTT | GCT | ATG | CAA | ATG | GCA | TAT | AGG | TTT | AAT | GGC | ATT | GGA | GTT | ACC | CAA | AAT | GTT | CTC | TAT | GAG | AAC | CAA | AAA | CAG | ATT | GCC | AAC | CAA | TTT | AAC | AAG | GCA | ATC | AGT | CAA | ATT | CAA | GAA | TCA | CTT | ACG | ACA | ACA | TCA | ACT | GCA | TTG | GGC | AAG | CTG | CAA | GAC | GTT | GTC | AAT | CAG | AAT | GCT | CAA | GCA | TTA | AAT | ACA | CTT | GTT | AAA | CAA | CTT | AGC | TCC | AAT | TTT | GGT | GCA | ATT | TCA | AGT | GTG | CTA | AAT | GAC | ATC | CTT | TCA | CGA | CTA | GAC | AAA | GTC | GAG | GCA | GAG | GTG | CAA | ATT | GAC | AGG | TTG | ATT | ACA | GGC | AGA | TTA | CAA | AGC | CTC | CAA | ACC | TAT | GTA | ACA | CAA | CAA | TTA | ATC | AGA | GCT | GCT | GAA | ATC | AGA | GCT | TCT | GCC | AAC | CTT | GCT | GCT | ACT | AAA | ATG | TCT | GAG | TGT | GTT | CTT | GGA | CAA | TCA | AAA | AGA | GTT | GAC | TTC | TGT | GGA | AAA | GGC | TAT | CAC | CTG | ATG | TCT | TTC | CCC | CAA | GCT | GCT | CCA | CAT | GGT | GTG | GTC | TTC | CTA | CAT | GTC | ACT | TAT | GTG | CCA | TCG | CAG | GAA | AGA | AAC | TTC | ACT | ACT | GCC | CCA | GCA | ATT | TGT | CAT | GAA | GGC | AAA | GCA | TAC | TTC | CCT | CGT | GAA | GGT | GTT | TTT | GTA | TCT | AAT | GGC | ACT | TCT | TGG | TTC | ATC | ACA | CAG | AGG | AAT | TTT | TAC | TCA | CCA | CAG | ATA | ATT | ACA | ACA | GAC | AAT | ACA | TTT | GTC | GCT | GGA | AAT | TGT | GAT | GTC | GTA | ATT | GGC | ATC | ATT | AAC | AAT | ACT | GTT | TAT | GAT | CCT | CTG | CAA | CCT | GAG | CTT | GAC | TCA | TTT | AAA | GAA | GAG | CTG | GAC | AAG | TAC | TTC | AAA | AAT | CAT | ACA | TCA | CCA | GAT | GTT | GAT | CTC | GGC | GAC | ATT | TCA | GGC | ATT | AAT | GCT | TCT | GTC | GTC | AAT | ATT | CAA | AAA | GAA | ATT | GAC | CGC | CTC | AAT | GAG | GTC | GCC | AAA | AAT | CTA | AAT | GAA | TCA | CTC | ATT | GAC | CTC | CAA | GAA | CTT | GGA | AAA | TAT | GAG | CAA | TAC | ATC | AAA | TGG | CCT | TGG | TAT | GTT | TGG | CTC | GGC | TTC | ATC | GCC | GGA | CTA | ATT | GCC | ATT | GTC | ATG | GTT | ACA | ATC | TTG | CTT | TGT | TGC | ATG | ACC | AGC | TGT | TGC | AGT | TGC | CTC | AAG | GGT | GCA | TGC | TCT | TGC | GGT | TCT | TGC | TGC | AAA | TTT | GAT | GAG | GAC | GAC | TCT | GAG | CCA | GTG | CTC | AAG | GGA | GTC | AAA | CTA | CAC | TAC | ACA | TAA |
KY938558_Bat_CoV_strain_16BO133 | CTC | ATT | AGT | TAC | ACA | ACT | TTT | CTC | ATT | CCT | TAC | ACA | G---CT | ACA | ACA | ACA | TGT | TTC | TCA | GGG | CCT | ACA | ACA | GAG | AAT | AAG | TTG | AAC | ATA | TCC | TCA | GGT | AGT | AGG | GGT | GTT | TAT | TAC | CCT | GAT | GAC | ATT | TTT | CGT | TCC | AAT | GTT | AGT | GTG | TTG | GTG | ACA | GGA | CGT | TTC | CTT | CGC | TTT | AAC | ACC | ACT | CTT | ACG | TGG | TAC | AAT | TCA | TGG | AAC | C-- | -AG | GCT | TAT | TCT | TCA | --- | --- | --- | --- | --- | --- | CCT | GTC | TTG | CCT | TTT | GGG | CAT | GGT | GTT | TAC | TTT | TCA | ACC | ATT | GAC | AAA | TCT | AAT | GTT | GTC | AGA | GGT | TGG | ATT | TTT | GGA | ACC | ACG | TTA | GAT | AAC | ACC | ACT | CAA | TCC | GCA | TTG | CTT | GTG | AAC | AAT | GGT | AGT | GCT | ATT | ACA | ATA | GAA | GTC | TGT | TAC | TTC | CAA | TTT | TGT | GAC | AAC | CCT | GCC | TTT | ATA | ATT | AGT | GGC | --- | --- | --- | --- | --- | --- | GGT | GCA | CAA | ACA | AAC | ACT | GCT | ATC | TAT | ATC | AAC | TTA | CGT | AAT | TGT | ACA | TAT | GTG | GAC | ACA | CTA | CGT | GAC | TTA | CCA | TTA | AGT | TTT | GCG | G---AG | GTT | GAT | GGT | GGT | TTT | AAA | CAC | TTA | CGT | GAG | TTT | GTA | TTC | AAG | AAT | AGT | GAT | GGG | TTT | TTG | CAC | ATT | TAT | GGT | GCT | TAC | CAG | CCT | CAC | GAC | TTA | GAC | ATA | GGTGCTCCGGCTGCA | CTA | CCA | GCT | CAA | TTC | CTG | CCT | TTA | AAG | CCC | CTA | TGG | AAA | CTG | CCC | CTC | GGT | TTA | AAT | ATT | ACC | AAT | TAT | AAG | GTT | GTG | ACA | ACT | TTA | --- | --- | AAA | CCC | ACA | AA- | --- | --- | --- | --- | --- | --T | CAG | GCC | TTC | CAA | --- | --- | GCT | GCT | TAT | ATA | GTG | GGT | AAC | TTA | AAA | CAT | ACA | ACT | ATG | ATG | TTG | TCT | TTT | AAT | GAA | AAT | GGC | ACT | ATG | TCC | AAT | GCT | ATT | GAT | TGC | TCT | CAG | GAC | CCA | TTG | GCT | GAG | CTA | AAG | TGC | ACA | CTC | AAG | CAG | TTT | GAT | GTA | GGT | AAA | GGT | ATT | TAC | CAA | ACG | TCA | AAC | TTC | CGA | GTT | CAA | CCT | ACT | GTT | GAT | GTT | GCG | CGC | TTT | CCA | AAT | ATT | ACT | AAC | GTG | TGT | CCT | TTT | GAC | AAG | GTT | TTT | AAT | GCT | ACA | CGC | TTT | CCT | AGT | GTC | TAT | GCG | TGG | GAA | AGA | ACA | AAG | ATT | TCT | GAT | TGT | GTT | GCA | GAT | TAC | ACT | GTT | TTC | TAC | AAC | TCA--- | ACT | TCT | TTT | TCG | ACT | TTC | AAC | TGT | TAT | GGA | GTG | TCT | CCT | TCT | AAG | TTG | ATT | GAT | TTG | TGT | TTT | ACA | AGT | GTG | TAT | GCA | GAT | ACA | TTT | TTG | ATA | AGA | TTT | TCC | GAA | GTC | AGA | CAA | GTA | GCA | CCT | GGT | CAG | ACT | GGT | GTT | ATT | GCA | GAC | TAC | AAT | TAT | AAA | CTA | CCT | GAC | GAC | TTT | ATA | GGT | TGT | GTT | ATA | GCT | TGG | AAC | A-- | --- | --- | --- | --- | -CA | GCC | AAG | CAA | GAC | GTC | GGT | AGC | TAT | TTT | TAT | AGG | TCC | CAT | CGT | TCT | AGC | AAA | TTA | AAA | CCC | TTT | GAA | AGA | GAC | CTT | TCA | TCA | G-- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | -AA | GA- | --- | --A | AAT | GGT | GTC | CTT | ACA | CTT | AGT | ACC | TAT | GAC | TTT | AAT | CAA | AAT | GTA | CCT | CTT | GAG | TAC | CAA | GCC | ACT | AGA | GTC | GTT | GTT | CTT | TCC | TTT | GAA | CTT | CTT | AAT | GCA | CCT | GCT | ACA | GTG | TGT | GGA | CCA | AAA | TTA | TCC | ACT | CCA | TTG | GTT | AAG | AAC | CAG | TGC | GTC | AAC | TTC | AAC | TTT | AAT | GGA | CTT | AAA | GGT | ACT | GGT | GTG | TTG | ACT | GAC | TCG | TCT | AAA | ACG | TTT | CAA | TCT | TTC | CAG | CAG | TTT | GGT | CGG | GAC | GCA | TCT | GAT | TTT | ACT | GAT | TCT | GTG | CGT | GAC | CCG | CAA | ACT | TTA | CAG | ATA | CTT | GAC | ATT | TCA | CCG | TGC | TCT | TTT | GGT | GGT | GTA | AGT | GTC | ATA | ACA | CCA | GGA | ACT | AAC | ACT | TCA | TCT | GCA | GTG | GCT | GTT | CTT | TAC | CAA | GAT | GTA | AAC | TGC | ACT | GAT | GTT | CCC | ACA | ACA | ATA | CAT | GCA | GAT | CAC | TTA | ACA | CAC | TCT | TGG | CGT | GTT | TAT | ACC | ACT | GGA | CCC | CAT | G------TT | TTC | CAA | ACA | CAA | GCA | GGG | TGC | CTT | ATA | GGA | GCT | GAA | CAT | GTC | AAC | GTA | TCC | TAT | CAG | TGT | GAC | ATT | CCA | ATT | GGT | GCT | GGC | ATT | TGT | GCT | AGC | TAT | CAT | ACA | GCC | TCA | CTT | T-- | --- | --- | --- | -TA | CGG | AGT | ACA | GGT | CAA | AAA | TCT | ATT | GTG | GCC | TAT | ACT | ATG | TCA | TTA | GGT | GCT | GAA | AAT | TCT | GTG | GCA | TAT | GCT | AAT | AAT | TCA | ATT | GCC | ATA | CCT | ACT | AAT | TTT | TCT | ATT | AGT | GTC | ACT | ACT | GAA | GTG | ATG | CCT | GTT | TCT | ATG | GCT | AAA | ACA | TCT | GTC | GAT | TGT | ACT | ATG | TAC | ATC | TGT | GGT | GAT | TCT | TTA | GAG | TGC | AGT | AAC | CTA | CTG | CTT | CAG | TAT | GGT | AGC | TTC | TGT | ACC | CAA | CTC | AAT | CGT | GCC | CTT | TCT | GGC | ATT | GCT | GTT | GAA | CAG | GAC | AAA | AAT | ACC | CAA | GAG | GTG | TTT | GCC | CAG | GTT | AAA | CAG | ATG | TAT | AAA | ACA | CCA | ACC | ATA | AGA | GAT | TTT | GGT | GGT | TTT | AAT | TTC | TCT | CAG | ATA | TTA | CCA | GAC | CCT | TTG | AAG | CCT | ACT | AAG | CGT | TCT | TTT | ATA | GAG | GAT | TTG | CTC | TAT | AAC | AAA | GTA | ACA | CTC | GCG | GAT | GCT | GGT | TTC | ATG | AAA | CAG | TAC | GCA | GAC | TGT | TTG | GGT | GGT | ATT | AAC | GCA | AGA | GAT | CTC | ATC | TGT | GCT | CAA | AAG | TTT | AAT | GGG | CTG | ACA | GTC | TTA | CCA | CCT | TTG | CTC | ACT | GAT | GAC | ATG | ATT | GCT | GCC | TAT | ACT | GCA | GCG | CTC | ATT | AGT | GGC | ACT | GCC | ACT | GCA | GGC | TGG | ACT | TTC | GGT | GCA | GGT | GCA | GCC | CTT | CAA | ATA | CCT | TTT | GCT | ATG | CAA | ATG | GCT | TAT | AGG | TTT | AAT | GGC | ATT | GGA | GTT | ACT | CAA | AAT | GTT | CTC | TAT | GAG | AAC | CAA | AAA | CAA | ATT | GCC | AAT | CAG | TTC | AAT | AAG | GCT | ATT | ACT | CAA | ATT | CAA | GAA | TCA | CTC | ACA | ACT | ACA | GCG | ACA | GCG | CTG | GGC | AAG | CTG | CAA | GAC | GTA | GTC | AAC | CAG | AAT | GCT | CAA | GCA | TTA | AAT | ACA | CTT | GTC | AAA | CAA | CTT | AGC | TCC | AAT | TTT | GGT | GCT | ATT | TCA | AGT | GCT | TTG | AAT | GAT | ATC | CTC | TCA | CGA | CTT | GAC | AAA | GTT | GAG | GCA | GAG | GTG | CAA | ATT | GAC | AGG | TTG | ATT | ACA | GGC | AGA | TTA | CAA | AGC | CTC | CAA | ACC | TAT | GTA | ACA | CAA | CAA | CTA | ATC | AGA | GCT | GCT | GAA | ATC | AGG | GCT | TCT | GCT | AAT | CTT | GCT | GCT | ACC | AAA | ATG | TCT | GAG | TGT | GTT | CTT | GGA | CAA | TCG | AAA | AGA | GTT | GAT | TTT | TGT | GGA | AAA | GGC | TAT | CAC | CTT | ATG | TCT | TTC | CCT | CAA | TCC | GCT | CCA | CAT | GGT | GTT | GTG | TTC | TTA | CAT | GTC | ACT | TAT | GTG | CCA | GCA | CAA | GAA | AAG | AAC | TTC | ACT | ACT | GCC | CCA | GCA | ATT | TGT | CAT | GAA | GGC | AAG | GCG | TAC | TTC | CCT | CGT | GAA | GGT | GTG | TTT | GTA | TCT | AAT | GGC | AGT | TCT | TGG | TTT | ATT | ACA | CAG | AGG | AAT | TTT | TAT | TCG | CCA | CAG | ATA | ATC | ACA | ACA | GAC | AAT | ACA | TTT | GTA | GCC | GGA | AGT | TGT | GAC | GTC | GTC | ATT | GGA | ATT | ATT | AAC | AAT | ACA | GTT | TAT | GAT | CCT | CTG | CAA | CCT | GAG | CTT | GAC | TCA | TTT | AAA | CAA | GAG | CTA | GAC | AAG | TAC | TTC | AAA | AAT | CAT | ACA | TCA | CCT | GAT | GTT | GAT | CTT | GGC | GAC | ATT | TCA | GGC | ATC | AAT | GCT | TCT | GTC | GTC | GAT | ATT | CAA | AAA | GAA | ATT | GAC | CGC | CTC | AAT | GAG | GTT | GCC | AAA | AAT | TTA | AAT | GAA | TCA | CTC | ATT | GAC | CTT | CAA | GAA | CTT | GGC | AAA | TAT | GAG | CAA | TAT | ATT | AAA | TGG | CCT | TGG | TAT | GTC | TGG | CTT | GGC | TTT | ATA | GCA | GGG | TTA | GTA | GGA | TTA | TTT | ATG | GCC | ATC | ATT | CTT | CTT | TGT | TAC | TTT | ACT | AGC | TGC | TGC | AGC | TGC | TGT | AAA | GGC | ATG | TGC | TCC | TGT | GGT | TCT | TGC | TGC | AGA | TTT | GAT | GAA | GAC | GAC | TCT | GAG | CCA | GTG | CTC | AAA | GGA | GTC | AAA | TTA | CAT | TAT | ACA | TAA |
DQ412042_Bat_SARS_CoV_Rf1 | TTG | CTT | TCC | TAG | TTA | CCC | TAG | TTA | AAG | CAC | AAG | AAG | G---TT | GTG | GCG | TGA | TCA | ACC | TCA | GGA | C-- | ACA | ACC | TAA | ATT | AAC | --A | CAA | GTC | TCC | TCC | TCG | CGT | AGA | GGT | GTT | TAT | TAT | AAT | GAT | GAT | ATA | TTC | CGT | TCT | GAT | GTT | TTA | CAT | CTC | ACG | CAG | GAT | TAT | TTC | TTA | CCA | TTC | CAT | TCT | AAC | CTA | ACA | CAG | TAC | TTT | TCT | CTT | AAT | A-- | -TT | GAG | TCA | GAT | AAA | ATT | GTT | TAT | TTT | GAC | AAT | CCC | ATA | TTG | AAA | TTT | GGT | GAC | GGT | GTT | TAC | TTC | GCA | GCC | ACC | GAA | AAG | TCT | AAT | GTA | ATA | AGA | GGC | TGG | GTG | TTT | GGT | TCC | ACT | TTT | GAC | AAC | ACC | ACT | CAG | TCT | GCT | ATT | ATA | GTC | AAT | AAT | TCC | ACA | CAC | ATT | ATT | ATA | CGT | GTG | TGC | TAT | TTT | AAC | CTC | TGT | AAA | GAC | CCC | ATG | TAT | ACT | GTG | TCT | GCT | --- | --- | --- | --- | --- | --- | GGC | ACC | CAA | AAG | TCC | TCA | TGG | GTT | TAT | CAG | AGT | GCT | TTC | AAT | TGC | ACA | TAC | GAT | AGA | GTG | GAA | AAA | AGC | TTC | CAA | CTA | GAC | ACA | TCC | C---CT | AAG | ACT | GGT | AAT | TTT | ACT | GAC | TTA | CGT | GAG | TTT | GTC | TTT | AAA | AAT | CGT | GAT | GGG | TTT | TTC | ACT | GCT | TAC | CAG | ACT | TAT | ACC | CCA | GTT | AAC | CTC | CTT | AGA | GGTTTGCCATCAGGT | CTT | TCA | G-- | --- | --- | --- | -TT | TTA | AAA | CCC | ATT | CTT | AAA | TTA | CCA | TTT | GGA | ATT | AAT | ATT | ACT | TCT | TTT | AGA | GTG | GTT | ATG | GCT | ATG | TTC | AGT | AAA | ACC | ACT | TC- | --- | --- | --- | --- | --- | --T | AAT | TAT | GTG | CCA | GAA | AGT | GCT | GCT | TAT | TAT | GTG | GGT | AAT | CTT | AAA | CAG | TCC | ACC | TTT | ATG | CTC | AGT | TTT | AAT | CAG | AAT | GGA | ACT | ATT | GTA | GAT | GCT | GTG | GAT | TGT | TCT | CAA | GAT | CCA | CTT | GCA | GAG | TTA | AAG | TGT | ACT | ACA | AAA | AGT | TTT | AAT | GTC | TCC | AAA | GGC | ATT | TAT | CAA | ACT | TCC | AAT | TTC | AGA | GTA | TCA | CCA | GTT | ACT | GAG | GTT | GTT | AGA | TTT | CCA | AAT | ATT | ACA | AAT | CTC | TGT | CCT | TTT | GAC | AAG | GTT | TTT | AAT | GCC | ACA | CGC | TTT | CCT | AGT | GTC | TAT | GCC | TGG | GAA | AGA | ACA | AAG | ATT | TCT | GAT | TGT | GTT | GCA | GAT | TAC | ACT | GTT | TTC | TAC | AAC | TCA--- | ACT | TCT | TTT | TCG | ACT | TTC | AAC | TGT | TAC | GGA | GTC | TCT | CCT | TCT | AAG | TTG | ATT | GAT | TTG | TGT | TTT | ACA | AGT | GTG | TAT | GCA | GAC | ACA | TTT | TTG | ATA | AGA | TTT | TCC | GAA | GTC | AGA | CAA | GTA | GCA | CCT | GGT | CAG | ACT | GGT | GTT | ATT | GCA | GAC | TAC | AAT | TAT | AAA | CTA | CCT | GAC | GAC | TTT | ACA | GGC | TGT | GTT | ATA | GCT | TGG | AAC | A-- | --- | --- | --- | --- | -CT | GCT | AAG | CAA | GAC | GTC | GGT | AGC | TAT | TTT | TAT | AGG | TCT | CAT | CGC | TCT | AGC | AAA | TTA | AAA | CCC | TTT | GAA | AGA | GAC | CTT | TCA | TCA | G-- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | -AA | GA- | --- | --A | AAT | GGT | GTC | CGT | ACA | CTC | AGT | ACG | TAT | GAT | TTT | AAC | CAA | AAT | GTA | CCT | CTT | GAG | TAC | CAA | GCC | ACT | AGA | GTT | GTT | GTT | CTT | TCA | TTT | GAA | CTC | CTT | AAT | GCA | CCT | GCT | ACA | GTG | TGT | GGA | CCA | AAA | TTA | TCC | ACT | TCA | TTG | GTT | AAG | AAC | CAG | TGC | GTC | AAC | TTC | AAC | TTT | AAT | GGA | TTT | AAA | GGT | ACT | GGT | GTG | TTG | ACC | GAC | TCG | TCT | AAA | ACG | TTT | CAG | TCT | TTT | CAG | CAG | TTT | GGT | CGG | GAT | GCA | TCT | GAT | TTT | ACT | GAT | TCA | GTG | CGT | GAC | CCG | CAA | ACT | TTA | CGG | ATA | CTT | GAC | ATT | TCA | CCG | TGC | TCT | TTT | GGT | GGT | GTG | AGT | GTC | ATA | ACA | CCA | GGA | ACT | AAC | ACT | TCA | TCT | GCA | GTG | GCT | GTT | CTT | TAC | CAA | GAT | GTA | AAC | TGC | ACT | GAT | GTT | CCC | AGA | ACA | ATA | CAA | GCA | GAT | CAA | TTA | GCA | CCC | TCT | TGG | CGT | GTT | TAT | ACC | ACT | GGA | CCC | TAT | G------TT | TTC | CAA | ACA | CAA | GCA | GGG | TGC | CTT | ATA | GGA | GCT | GAA | CAT | GTC | AAC | GCA | TCC | TAT | CAG | TGT | GAC | ATT | CCA | ATT | GGT | GCT | GGC | ATT | TGT | GCT | AGC | TAT | CAT | ACA | GCC | TCA | CAC | T-- | --- | --- | --- | -TA | CGG | AGT | ACA | GGT | CAA | AAA | TCC | ATT | GTG | GCC | TAT | ACT | ATG | TCA | TTA | GGT | GCT | GAA | AAT | TCT | GTG | GCA | TAT | GCT | AAT | AAT | TCC | ATT | GCC | ATA | CCT | ACT | AAT | TTT | TCT | ATT | AGT | GTC | ACT | ACT | GAA | GTG | ATG | CCT | GTT | TCT | ATG | GCT | AAA | ACA | TCT | GTC | GAT | TGT | ACT | ATG | TAC | ATC | TGT | GGT | GAT | TCT | TTA | GAG | TGC | AGT | AAC | CTA | CTG | CTT | CAG | TAT | GGT | AGC | TTC | TGT | ACC | CAA | CTT | AAT | CGT | GCC | CTT | TCT | GGC | ATT | GCT | GTA | GAA | CAG | GAT | AAA | AAC | ACC | CAA | GAG | GTG | TTT | GCC | CAG | GTT | AAA | CAG | ATG | TAT | AAA | ACA | CCA | ACC | ATA | AGA | GAT | TTT | GGT | GGT | TTT | AAT | TTC | TCT | CAG | ATA | TTA | CCA | GAC | CCT | TTG | AAG | CCT | ACT | AAG | CGT | TCT | TTT | ATA | GAG | GAT | TTG | CTC | TAC | AAC | AAA | GTA | ACA | CTC | GCG | GAT | GCA | GGT | TTC | ATG | AAA | CAG | TAT | GCA | GAC | TGT | CTG | GGT | GGT | ATT | AAC | GCA | AGA | GAT | CTC | ATC | TGT | GCT | CAA | AAG | TTT | AAT | GGA | CTG | ACA | GTC | TTA | CCA | CCT | TTG | CTC | ACT | GAT | GAC | ATG | ATT | GCT | GCC | TAT | ACT | GCA | GCG | CTC | ATT | AGT | GGC | ACT | GCC | ACT | GCA | GGC | TGG | ACT | TTC | GGT | GCA | GGT | GCA | GCC | CTT | CAA | ATA | CCT | TTT | GCT | ATG | CAA | ATG | GCT | TAT | AGG | TTT | AAT | GGC | ATT | GGA | GTT | ACT | CAA | AAT | GTT | CTC | TAC | GAG | AAC | CAA | AAA | CAA | ATT | GCC | AAT | CAG | TTC | AAT | AAG | GCT | ATT | ACT | CAA | ATT | CAA | GAA | TCA | CTC | ACA | ACT | ACA | TCG | ACA | GCA | TTG | GGC | AAG | CTG | CAA | GAC | GTA | GTC | AAC | CAG | AAT | GCT | CAA | GCA | TTA | AAT | ACA | CTT | GTC | AAA | CAA | CTT | AGC | TCC | AAT | TTT | GGT | GCT | ATT | TCA | AGT | GCT | TTG | AAT | GAC | ATC | CTC | TCA | CGA | CTT | GAC | AAA | GTT | GAG | GCA | GAG | GTG | CAA | ATT | GAC | AGG | TTG | ATT | ACA | GGC | AGA | TTA | CAA | AGC | CTC | CAA | ACC | TAT | GTA | ACA | CAA | CAA | CTA | ATC | AGA | GCT | GCT | GAA | ATC | AGG | GCT | TCT | GCT | AAT | CTT | GCT | GCT | ACC | AAA | ATG | TCT | GAG | TGT | GTT | CTT | GGA | CAA | TCG | AAA | AGA | GTT | GAT | TTT | TGT | GGA | AAA | GGC | TAC | CAC | CTT | ATG | TCT | TTC | CCT | CAA | TCC | GCT | CCA | CAC | GGT | GTT | GTG | TTC | TTA | CAT | GTC | ACT | TAT | GTG | CCA | TCA | CAA | GAA | AAG | AAC | TTC | ACC | ACT | GCC | CCA | GCA | ATT | TGT | CAT | GAA | GGT | AAG | GCA | TAC | TTC | CCT | CGT | GAA | GGT | GTG | TTT | GTA | TCC | AAT | GGC | AGT | TCT | TGG | TTT | ATT | ACA | CAG | AGG | AAT | TTT | TAT | TCA | CCA | CAG | ATA | ATC | ACA | ACA | GAC | AAT | ACA | TTT | GTC | GCC | GGA | AGT | TGT | GAT | GTC | GTC | ATT | GGA | ATC | ATT | AAC | AAT | ACA | GTT | TAT | GAT | CCT | CTG | CAA | CCT | GAG | CTT | GAC | TCA | TTT | AAA | CAA | GAG | CTA | GAC | AAG | TAC | TTC | AAA | AAT | CAT | ACA | TCA | CCT | GAT | GTT | GAT | CTT | GGC | GAT | ATT | TCA | GGC | ATT | AAC | GCT | TCT | GTC | GTC | GAT | ATT | CAA | AAA | GAA | ATT | GAC | CGC | CTC | AAT | GAG | GTT | GCC | AAA | AAT | TTA | AAT | GAA | TCA | CTC | ATT | GAC | CTT | CAA | GAA | CTT | GGC | AAA | TAT | GAG | CAA | TAT | ATT | AAA | TGG | CCT | TGG | TAT | GTC | TGG | CTT | GGC | TTT | ATA | GCA | GGG | TTA | GTA | GGA | TTA | TTC | ATG | GCC | ATC | ATT | CTT | CTT | TGT | TAC | TTT | ACT | AGC | TGC | TGC | AGC | TGC | TGT | AAA | GGC | ATG | TGC | TCC | TGT | GGT | TCT | TGC | TGC | AGA | TTT | GAT | GAA | GAC | GAC | TCT | GAG | CCA | GTG | CTC | AAA | GGA | GTC | AAA | TTA | CAT | TAC | ACA | TAA |
DQ648856_Bat_CoV_BtCoV_273_2005 | TTG | CTT | TCC | TAG | TTA | CCC | TAG | TTA | AAG | CAC | AAG | AAG | G---TT | GTG | GCG | TGA | TCA | ACC | TCA | GGA | C-- | ACA | ACC | TAA | ATT | AAC | --A | CAA | GTC | TCC | TCC | TCG | CGT | AGA | GGT | GTT | TAT | TAT | AAT | GAT | GAT | ATA | TTC | CGT | TCT | GAT | GTT | TTA | CAT | CTC | ACG | CAG | GAT | TAT | TTC | TTA | CCA | TTC | CAT | TCT | AAC | CTA | ACA | CAG | TAC | TTT | TCT | CTT | AAT | A-- | -TT | GAG | TCA | GAT | AAA | ATT | GTT | TAT | TTT | GAC | AAT | CCC | ATA | TTG | AAA | TTT | GGT | GAC | GGT | GTT | TAC | TTC | GCA | GCC | ACC | GAA | AAG | TCT | AAT | GTA | ATA | AGA | GGC | TGG | GTG | TTT | GGT | TCC | ACT | TTT | GAC | AAC | ACC | ACT | CAG | TCT | GCT | ATT | ATA | GTC | AAT | AAT | TCC | ACA | CAC | ATT | ATT | ATA | CGT | GTG | TGC | TAT | TTT | AAC | CTC | TGT | AAA | GAC | CCC | ATG | TAT | ACT | GTG | TCT | GCT | --- | --- | --- | --- | --- | --- | GGC | ACC | CAA | AAG | TCC | TCA | TGG | GTT | TAT | CAG | AGT | GCT | TTC | AAT | TGC | ACA | TAC | GAT | AGA | GTG | GAA | AAA | AGC | TTC | CAA | CTA | GAC | ACA | TCC | C---CT | AAG | ACT | GGT | AAT | TTT | ACT | GAC | TTA | CGT | GAG | TTT | GTC | TTT | AAA | AAT | CGT | GAT | GGG | TTT | TTC | ACT | GCT | TAC | CAG | ACT | TAT | ACC | CCA | GTT | AAC | CTC | CTT | AGA | GGTTTGCCATCAGGT | CTT | TCA | G-- | --- | --- | --- | -TT | TTA | AAA | CCC | ATT | CTT | AAA | TTA | CCA | TTT | GGA | ATT | AAT | ATT | ACT | TCT | TTT | AGA | GTG | GTT | ATG | GCT | ATG | TTC | AGT | AAA | ACC | ACT | TC- | --- | --- | --- | --- | --- | --T | AAT | TAT | GTG | CCA | GAA | AGT | GCT | GCT | TAT | TAT | GTG | GGT | AAT | CTT | AAA | CAG | TCC | ACC | TTT | ATG | CTC | AGT | TTT | AAT | CAG | AAT | GGA | ACT | ATT | GTA | GAT | GCT | GTG | GAT | TGT | TCT | CAA | GAT | CCA | CTT | GCA | GAG | TTA | AAG | TGT | ACT | ACA | AAA | AGT | TTT | AAT | GTC | TCC | AAA | GGC | ATT | TAT | CAA | ACT | TCC | AAT | TTC | AGA | GTA | TCA | CCA | GTT | ACT | GAG | GTT | GTT | AGA | TTT | CCA | AAT | ATT | ACA | AAT | CTC | TGT | CCT | TTT | GAC | AAG | GTT | TTT | AAT | GCC | ACA | CGC | TTT | CCT | AGT | GTC | TAT | GCC | TGG | GAA | AGA | ACA | AAG | ATT | TCT | GAT | TGT | GTT | GCA | GAT | TAC | ACT | GTT | TTC | TAC | AAC | TCA--- | ACT | TCT | TTT | TCG | ACT | TTC | AAC | TGT | TAC | GGA | GTC | TCT | CCT | TCT | AAG | TTG | ATT | GAT | TTG | TGT | TTT | ACA | AGT | GTG | TAT | GCA | GAC | ACA | TTT | TTG | ATA | AGA | TTT | TCC | GAA | GTC | AGA | CAA | GTA | GCA | CCT | GGT | CAG | ACT | GGT | GTT | ATT | GCA | GAC | TAC | AAT | TAT | AAA | CTA | CCT | GAC | GAC | TTT | ACA | GGC | TGT | GTT | ATA | GCT | TGG | AAC | A-- | --- | --- | --- | --- | -CT | GCT | AAG | CAA | GAC | GTC | GGT | AGC | TAT | TTT | TAT | AGG | TCT | CAT | CGC | TCT | AGC | AAA | TTA | AAA | CCC | TTT | GAA | AGA | GAC | CTT | TCA | TCA | G-- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | -TT | GA- | --- | --A | GAA | AAT | GGC | CGT | ACA | CTC | AGT | ACG | TAT | GAT | TTT | AAC | CAA | AAT | GTA | CCT | CTT | GAG | TAC | CAA | GCC | ACT | AGA | GTT | GTT | GTT | CTT | TCT | TTT | GAA | CTT | CTT | AAT | GCA | CCT | GCT | ACA | GTG | TGT | GGA | CCA | AAA | TTA | TCC | ACT | TCA | TTG | GTT | AAG | AAC | CAG | TGC | GTC | AAC | TTC | AAC | TTT | AAT | GGA | TTT | AAA | GGT | ACT | GGT | GTG | TTG | ACC | GAC | TCG | TCT | AAA | ACG | TTT | CAG | TCT | TTT | CAG | CAG | TTT | GGT | CGG | GAT | GCA | TCT | GAT | TTT | ACT | GAT | TCA | GTG | CGT | GAC | CCG | CAA | ACT | TTA | CGG | ATA | CTT | GAC | ATT | TCA | CCG | TGC | TCT | TTT | GGT | GGT | GTG | AGT | GTC | ATA | ACA | CCA | GGA | ACT | AAC | ACT | TCA | TCT | GCA | GTG | GCT | GTT | CTT | TAC | CAA | GAT | GTA | AAC | TGC | ACT | GAT | GTT | CCC | AGA | ACA | ATA | CAA | GCA | GAT | CAA | TTA | GCA | CCC | TCT | TGG | CGT | GTT | TAT | ACC | ACT | GGA | CCC | TAT | G------TT | TTC | CAA | ACA | CAA | GCA | GGG | TGC | CTT | ATA | GGA | GCT | GAA | CAT | GTC | AAC | GCA | TCC | TAT | CAG | TGT | GAC | ATT | CCA | ATT | GGT | GCT | GGC | ATT | TGT | GCT | AGC | TAT | CAT | ACA | GCC | TCA | CAC | T-- | --- | --- | --- | -TA | CGG | AGT | ACA | GGT | CAA | AAA | TCC | ATT | GTG | GCC | TAT | ACT | ATG | TCA | TTA | GGT | GCT | GAA | AAT | TCT | GTG | GCA | TAT | GCT | AAT | AAT | TCC | ATT | GCC | ATA | CCT | ACT | AAT | TTT | TCT | ATT | AGT | GTC | ACT | ACT | GAA | GTG | ATG | CCT | GTT | TCT | ATG | GCT | AAA | ACA | TCT | GTC | GAT | TGT | ACT | ATG | TAC | ATC | TGT | GGT | GAT | TCT | TTA | GAG | TGC | AGT | AAC | CTA | CTG | CTT | CAG | TAT | GGT | AGC | TTC | TGT | ACC | CAA | CTT | AAT | CGT | GCC | CTT | TCT | GGC | ATT | GCT | GTA | GAA | CAG | GAT | AAA | AAC | ACC | CAA | GAG | GTG | TTT | GCC | CAG | GTT | AAA | CAG | ATG | TAT | AAA | ACA | CCA | ACC | ATA | AGA | GAT | TTT | GGT | GGT | TTT | AAT | TTC | TCT | CAG | ATA | TTA | CCA | GAC | CCT | TTG | AAG | CCT | ACT | AAG | CGT | TCT | TTT | ATA | GAG | GAT | TTG | CTC | TAC | AAC | AAA | GTA | ACA | CTC | GCG | GAT | GCA | GGT | TTC | ATG | AAA | CAG | TAT | GCA | GAC | TGT | CTG | GGT | GGT | ATT | AAC | GCA | AGA | GAT | CTC | ATC | TGT | GCT | CAA | AAG | TTT | AAT | GGA | CTG | ACA | GTC | TTA | CCA | CCT | TTG | CTC | ACT | GAT | GAC | ATG | ATT | GCT | GCC | TAT | ACT | GCA | GCG | CTC | ATT | AGT | GGC | ACT | GCC | ACT | GCA | GGC | TGG | ACT | TTC | GGT | GCA | GGT | GCA | GCC | CTT | CAA | ATA | CCT | TTT | GCT | ATG | CAA | ATG | GCT | TAT | AGG | TTT | AAT | GGC | ATT | GGA | GTT | ACT | CAA | AAT | GTT | CTC | TAC | GAG | AAC | CAA | AAA | CAA | ATT | GCC | AAT | CAG | TTC | AAT | AAG | GCT | ATT | ACT | CAA | ATT | CAA | GAA | TCA | CTC | ACA | ACT | ACA | TCG | ACA | GCA | TTG | GGC | AAG | CTG | CAA | GAC | GTA | GTC | AAC | CAG | AAT | GCT | CAA | GCA | TTA | AAT | ACA | CTT | GTC | AAA | CAA | CTT | AGC | TCC | AAT | TTT | GGT | GCT | ATT | TCA | AGT | GCT | TTG | AAT | GAC | ATC | CTC | TCA | CGA | CTT | GAC | AAA | GTT | GAG | GCA | GAG | GTG | CAA | ATT | GAC | AGG | TTG | ATT | ACA | GGC | AGA | TTA | CAA | AGC | CTC | CAA | ACC | TAT | GTA | ACA | CAA | CAA | CTA | ATC | AGA | GCT | GCT | GAA | ATC | AGG | GCT | TCT | GCT | AAT | CTT | GCT | GCT | ACC | AAA | ATG | TCT | GAG | TGT | GTT | CTT | GGA | CAA | TCG | AAA | AGA | GTT | GAT | TTT | TGT | GGA | AAA | GGC | TAC | CAC | CTT | ATG | TCT | TTC | CCT | CAA | TCC | GCT | CCA | CAT | GGT | GTT | GTG | TTC | TTA | CAT | GTC | ACT | TAT | GTG | CCA | TCA | CAA | GAA | AAG | AAC | TTC | ACC | ACT | GCC | CCA | GCA | ATT | TGT | CAT | GAA | GGT | AAG | GCA | TAC | TTC | CCT | CGT | GAA | GGT | GTG | TTT | GTA | TCT | AAT | GGC | AGT | TCT | TGG | TTT | ATT | ACA | CAG | AGG | AAT | TTT | TAT | TCA | CCA | CAG | ATA | ATC | ACA | ACA | GAC | AAT | ACA | TTT | GTC | GCC | GGA | AGT | TGT | GAT | GTC | GTC | ATT | GGA | ATC | ATT | AAC | AAT | ACA | GTT | TAT | GAT | CCT | CTG | CAA | CCT | GAG | CTT | GAC | TCA | TTT | AAA | CAA | GAG | CTA | GAC | AAG | TAC | TTC | AAA | AAT | CAT | ACA | TCA | CCT | GAT | GTT | GAT | CTT | GGC | GAT | ATT | TCA | GGC | ATT | AAC | GCT | TCT | GTC | GTC | GAT | ATT | CAA | AAA | GAA | ATT | GAC | CGC | CTC | AAT | GAG | GTC | GCC | AAA | AAT | TTA | AAT | GAA | TCA | CTC | ATT | GAC | CTT | CAA | GAA | CTT | GGC | AAA | TAT | GAG | CAA | TAT | ATT | AAA | TGG | CCT | TGG | TAT | GTC | TGG | CTT | GGC | TTT | ATA | GCA | GGG | TTA | GTA | GGA | TTA | TTC | ATG | GCC | ATC | ATT | CTT | CTT | TGT | TAC | TTT | ACT | AGC | TGC | TGC | AGC | TGC | TGT | AAA | GGC | ATG | TGC | TCC | TGT | GGT | TCT | TGC | TGC | AGA | TTT | GAT | GAA | GAC | GAC | TCT | GAG | CCA | GTG | CTC | AAA | GGA | GTC | AAA | TTA | CAT | TAC | ACA | TAA |
KJ473812_BtRf_BetaCoV_HeB2013 | TTG | CTT | TCC | TAG | TTA | CCC | TAG | TTA | AAG | CAC | AAG | AAG | G---TT | GTG | GCG | TGA | TCA | ACC | TCA | AGA | C-- | ACA | ACC | TAT | ATT | AAC | --A | CAA | GTC | TCC | TCC | TCG | CGT | AGA | GGT | GTT | TAT | TAT | AAT | GAT | GAT | ATA | TTC | CGT | TCT | GAT | GTT | TTA | CAT | CTC | ACG | CAG | GAT | TAT | TTC | TTA | CCA | TTC | CAT | TCT | AAC | CTA | ACA | CAG | TAC | TTT | TCT | CTT | AAT | A-- | -TT | GAG | TCA | GAT | AAA | ATT | GTT | TAT | TTT | GAC | AAT | CCC | ATA | TTG | AAA | TTT | GGT | GAC | GGT | GTT | TAC | TTC | GCA | GCC | ACC | GAA | AAG | TCT | AAT | GTA | ATA | AGA | GGC | TGG | GTG | TTT | GGT | TCC | ACT | TTT | GAC | AAC | ACC | ACT | CAG | TCT | GCT | ATT | ATA | GTC | AAT | AAT | TCC | ACA | CAC | ATT | ATT | ATA | CGT | GTG | TGC | TAT | TTT | AAC | CTC | TGT | AAA | GAT | CCC | ATG | TAT | ACC | GTG | TCT | GCT | --- | --- | --- | --- | --- | --- | GGC | ACC | CAA | GTG | TCC | TCA | TGG | GTT | TAC | CAG | AGT | GCT | TTC | AAT | TGC | ACA | TAC | GAT | AGA | GTG | GAA | AAA | AGC | TTC | CAA | CTA | GAC | ACA | TCC | C---CT | AAG | ACT | GGT | AAT | TTT | ACT | GAC | TTA | CGT | GAG | TTT | GTC | TTT | AAA | AAT | CGT | GAT | GGG | TTT | TTC | ACT | GTT | TAC | CAG | ACT | TAT | ACC | CCA | GTT | AAC | CTC | CTT | AGA | GGTTTGCCATCAGGT | CTT | TCA | G-- | --- | --- | --- | -TT | TTA | AAA | CCC | ATT | CTT | AAA | TTA | CCG | TTT | GGA | ATT | AAT | ATT | ACT | TCT | TTT | AGA | GTG | GTT | ATG | GCA | ATG | TTC | AGT | AAA | ACC | ACT | TC- | --- | --- | --- | --- | --- | --T | AAT | TAT | GTG | CCA | GAA | AGT | GCT | GCT | TAT | TAT | GTG | GGC | AAT | CTT | AAA | CAG | TCC | ACT | TTT | ATG | CTC | AGC | TTT | AAT | CAG | AAT | GGA | ACT | ATT | GTA | GAT | GCT | GTG | GAT | TGT | TCT | CAA | GAT | CCA | CTT | GCA | GAG | TTA | AAG | TGT | ACT | ACA | AAA | AGT | TTT | AAT | GTC | TCC | AAA | GGC | ATT | TAT | CAA | ACT | TCC | AAT | TTC | AGA | GTA | TCA | CCA | GTT | ACT | GAG | GTT | GTT | AGA | TTT | CCA | AAT | ATT | ACA | AAT | CTC | TGT | CCT | TTT | GAC | AAG | GTT | TTT | AAT | GCC | ACA | CGC | TTT | CCT | AGT | GTC | TAT | GCC | TGG | GAA | AGA | ACT | AAG | ATT | TCT | GAT | TGT | GTT | GCA | GAT | TAC | ACT | GTT | TTC | TAC | AAC | TCA--- | ACT | TCT | TTT | TCG | ACT | TTC | AAC | TGT | TAC | GGA | GTC | TCT | CCT | TCT | AAG | TTG | ATT | GAT | TTG | TGT | TTT | ACA | AGT | GTG | TAT | GCA | GAC | ACA | TTT | TTG | ATA | AGA | TTT | TCA | GAA | GTC | AGA | CAA | GTG | GCA | CCT | GGT | CAG | ACT | GGT | GTT | ATT | GCA | GAC | TAC | AAT | TAT | AAA | CTA | CCT | GAC | GAC | TTT | ACA | GGC | TGT | GTT | ATA | GCT | TGG | AAC | A-- | --- | --- | --- | --- | -CT | GCT | AAG | CAA | GAC | GTC | GGT | AGC | TAT | TTT | TAT | AGG | TCT | CAT | CGC | TCT | AGC | AAA | TTA | AAA | CCC | TTT | GAA | AGA | GAC | CTT | TCA | TCA | G-- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | -AA | GA- | --- | --A | AAT | GGT | GTC | CGT | ACA | CTC | AGT | ACG | TAT | GAT | TTT | AAT | CAA | TAT | GTA | CCT | CTT | GAG | TAC | CAA | GCC | ACT | AGA | GTT | GTT | GTT | CTT | TCA | TTT | GAA | CTC | CTC | AAT | GCA | CCT | GCT | ACA | GTG | TGT | GGA | CCA | AAA | TTA | TCC | ACT | TCA | TTG | GTT | AAG | AAC | CAG | TGC | GTC | AAC | TTC | AAC | TTT | AAT | GGA | TTT | AAA | GGT | ACT | GGT | GTG | TTG | ACC | GAC | TCG | TCT | AAA | ACG | TTT | CAG | TCT | TTT | CAG | CAG | TTT | GGT | CGG | GAT | GCA | TCT | GAT | TTT | ACT | GAT | TCA | GTG | CGT | GAC | CCG | CAA | ACT | TTA | CGG | ATA | CTT | GAC | ATT | TCA | CCG | TGC | TCT | TTT | GGT | GGT | GTG | AGT | GTC | ATA | ACA | CCA | GGA | ACT | AAC | ACT | TCA | TCT | GCA | GTG | GCT | GTT | CTT | TAC | CAA | GAT | GTA | AAC | TGC | ACT | GAT | GTT | CCC | ACA | ACA | TTA | CAT | GCA | GAT | CAA | TTA | GCA | CCC | TCT | TGG | CGT | GTT | TAT | ACC | ACT | GGA | CCC | TAT | G------TT | TTC | CAA | ACA | CAA | GCA | GGG | TGC | CTT | ATA | GGA | GCT | GAA | CAT | GTC | AAC | GCA | TCC | TAT | CAG | TGT | GAC | ATT | CCA | ATT | GGT | GCT | GGC | ATT | TGT | GCT | AGC | TAT | CAT | ACA | GCC | TCA | CTT | T-- | --- | --- | --- | -TA | CGG | AGT | ACA | GGT | CAA | AAA | TCT | ATT | GTG | GCC | TAT | ACT | ATG | TCA | TTA | GGT | GCT | GAA | AAT | TCT | GTG | GCA | TAT | GCT | AAT | AAT | TCC | ATT | GCC | ATA | CCC | ACT | AAT | TTT | TCT | ATT | AGT | GTC | ACT | ACT | GAA | GTG | ATG | CCT | GTT | TCT | ATG | GCT | AAA | ACA | TCT | GTC | GAT | TGT | ACT | ATG | TAC | ATC | TGT | GGT | GAT | TCT | TTA | GAG | TGC | AGT | AAC | CTA | CTG | CTT | CAG | TAT | GGT | AGC | TTC | TGT | ACC | CAA | CTT | AAC | CGT | GCC | CTT | TCT | GGC | ATT | GCT | GTA | GAA | CAG | GAC | AAA | AAC | ACC | CAA | GAG | GTG | TTT | GCC | CAG | GTT | AAA | CAG | ATG | TAT | AAA | ACA | CCA | ACT | ATA | AGA | GAT | TTT | GGT | GGT | TTT | AAT | TTC | TCT | CAG | ATA | TTA | CCA | GAC | CCT | TTG | AAA | CCT | ACT | AAG | CGT | TCT | TTT | ATA | GAG | GAT | TTG | CTC | TAC | AAC | AAA | GTA | ACA | CTC | GCG | GAT | GCA | GGC | TTC | ATG | AAA | CAG | TAT | GCA | GAC | TGT | TTG | GGT | GGT | ATT | AAC | GCA | AGA | GAT | CTC | ATC | TGT | GCT | CAA | AAG | TTT | AAT | GGA | CTC | ACA | GTC | TTA | CCA | CCT | TTG | CTC | ACT | GAT | GAC | ATG | ATT | GCA | GCC | TAC | ACT | GCT | GCG | CTC | ATT | AGT | GGC | ACT | GCC | ACT | GCA | GGC | TGG | ACT | TTC | GGT | GCA | GGT | GCA | GCC | CTT | CAA | ATA | CCT | TTT | GCT | ATG | CAA | ATG | GCT | TAT | AGG | TTT | AAC | GGC | ATT | GGA | GTT | ACT | CAA | AAT | GTT | CTC | TAC | GAG | AAC | CAA | AAA | CAA | ATT | GCC | AAT | CAG | TTC | AAT | AAG | GCT | ATT | ACT | CAA | ATT | CAA | GAA | TCA | CTC | ACA | ACT | ACA | TCG | ACA | GCA | TTG | GGC | AAG | CTG | CAA | GAC | GTA | GTC | AAC | CAG | AAT | GCT | CAA | GCA | TTA | AAT | ACA | CTT | GTC | AAA | CAA | CTT | AGC | TCC | AAT | TTT | GGT | GCT | ATT | TCA | AGT | GCT | TTG | AAT | GAT | ATC | CTC | TCA | CGA | CTT | GAC | AAA | GTT | GAG | GCA | GAG | GTG | CAA | ATT | GAC | AGG | TTG | ATT | ACA | GGC | AGA | TTA | CAA | AGC | CTC | CAA | ACC | TAT | GTA | ACA | CAA | CAA | TTA | ATC | AGA | GCT | GCT | GAA | ATC | AGG | ACT | TCT | GCT | AAT | CTT | GCT | GCT | ACT | AAA | ATG | TCT | GAG | TGT | GTT | CTT | GGA | CAA | TCG | AAA | AGA | GTT | GAT | TTT | TGT | GGA | AAA | GGT | TAT | CAC | CTT | ATG | TCT | TTC | CCT | CAA | TCC | GCT | CCA | CAT | GGT | GTT | GTG | TTC | TTA | CAT | GTC | ACT | TAT | GTG | CCA | TCA | CAA | GAA | AGG | AAC | TTC | ACC | ACC | GCC | CCA | GCA | ATT | TGT | CAT | GAA | GGC | AAA | GCA | TAC | TTC | CCT | CGT | GAA | GGT | GTG | TTT | GTA | TCT | AAT | GGC | AGT | TTT | TGG | TTT | ATT | ACA | CAG | AGG | AAT | TTT | TAT | TCA | CCA | CAG | ATA | ATC | ACA | ACA | GAC | AAT | ACA | TTT | GTC | GCC | GGA | AGT | TGT | GAT | GTC | GTC | ATT | GGA | ATC | ATT | AAT | AAT | ACA | GTT | TAT | GAT | CCT | CTG | CAA | CCT | GAG | CTT | GAC | TCA | TTT | AAA | CAA | GAG | CTA | GAT | AAG | TAC | TTC | AAA | AAT | CAT | ACA | TCA | CCT | GAT | GTT | GAT | CTT | GGC | GAC | ATT | TCA | GGC | ATC | AAT | GCT | TCT | GTC | GTC | GAT | ATT | CAG | AAA | GAA | ATT | GAC | CGC | CTC | AAT | GAG | GTT | GCC | AAA | AAT | TTA | AAT | GAA | TCA | CTC | ATT | GAC | CTT | CAA | GAA | CTT | GGC | AAA | TAT | GAG | CAA | TAT | ATT | AAA | TGG | CCT | TGG | TAT | GTC | TGG | CTT | GGC | TTT | ATA | GCA | GGG | TTA | GTA | GGA | TTA | TTT | ATG | GCC | ATC | ATT | CTT | CTT | TGT | TAC | TTT | ACT | AGC | TGC | TGT | AGC | TGC | TGT | AAA | GGC | ATG | TGC | TCC | TGT | GGT | TCT | TGC | TGC | AGA | TTT | GAT | GAA | GAT | GAC | TCT | GAG | CCA | GTG | CTC | AAA | GGA | GTC | AAA | TTA | CAT | TAC | ACA | TAA |
KY770860_Bat_CoV_Jiyuan_84 | TTG | CTT | TCC | TAG | TTA | CCC | TAG | TTA | AAG | CAC | AAG | AAG | G---TT | GTG | GCG | TGA | TCA | ACC | TCA | AGA | C-- | ACA | ACC | TAC | ATT | AAC | --A | CAA | GTC | TCC | TCC | TCG | CGT | AGA | GGT | GTT | TAT | TAT | AAT | GAT | GAT | ATA | TTC | CGT | TCT | GAT | GTT | TTA | CAT | CTC | ACG | CAG | GAT | TAT | TTC | TTA | CCA | TTC | CAT | TCT | AAC | CTA | ACA | CAG | TAC | TTT | TCT | CTT | AAT | A-- | -TT | GAG | TCA | GAT | AAA | ATT | GTT | TAT | TTT | GAC | AAT | CCC | ATA | TTG | AAA | TTT | GGT | GAC | GGT | GTT | TAC | TTC | GCA | GCC | ACC | GAA | AAG | TCT | AAT | GTA | ATA | AGA | GGC | TGG | GTG | TTT | GGT | TCC | ACT | TTT | GAC | AAC | ACC | ACT | CAG | TCT | GCT | ATT | ATA | GTC | AAT | AAT | TCC | ACA | CAC | ATT | ATT | ATA | CGT | GTG | TGC | TAT | TTT | AAC | CTC | TGT | AAA | GAT | CCC | ATG | TAT | ACC | GTG | TCT | GCT | --- | --- | --- | --- | --- | --- | GGC | ACC | CAA | GTG | TCC | TCA | TGG | GTT | TAC | CAG | AGT | GCT | TTC | AAT | TGC | ACA | TAC | GAT | AGA | GTG | AAA | AAA | AGC | TTC | CAA | CTA | GAC | ACA | TCC | C---CT | AAG | ACT | GGT | AAT | TTT | ACT | GAC | TTA | CGT | GAG | TTT | GTC | TTT | AAA | AAT | CGT | GAT | GGG | TTT | TTC | ACT | GTT | TAC | CAG | ACT | TAT | ACC | CCA | GTT | AAC | CTC | CTT | AGA | GGTTTGCCATCAGGT | CTT | TCA | G-- | --- | --- | --- | -TT | TTA | AAA | CCC | ATT | CTT | AAA | TTA | CCG | TTT | GGA | ATT | AAT | ATT | ACT | TCT | TTT | AGA | GTG | GTT | ATG | GCA | ATG | TTC | AGC | AAA | ACC | ACT | TC- | --- | --- | --- | --- | --- | --T | AAT | TAT | GTG | CCA | GAA | AGT | GCT | GCT | TAT | TAT | GTG | GGC | AAT | CTT | AAA | CAG | TCC | ACT | TTT | ATG | CTC | AGC | TTT | AAT | CAG | AAT | GGA | ACT | ATT | GTA | GAT | GCT | GTG | GAT | TGT | TCT | CAA | GAT | CCA | CTT | GCA | GAG | TTA | AAG | TGT | ACT | ACA | AAA | AGT | TTT | AAT | GTC | TCC | AAA | GGC | ATT | TAT | CAA | ACT | TCC | AAT | TTC | AGA | GTA | TCA | CCA | GTT | ACT | GAG | GTT | GTT | AGA | TTT | CCA | AAT | ATT | ACA | AAT | CTC | TGT | CCT | TTT | GAC | AAG | GTT | TTT | AAT | GCC | ACA | CGC | TTT | CCT | AGT | GTC | TAT | GCC | TGG | GAA | AGA | ACT | AAG | ATT | TCT | GAT | TGT | GTT | GCA | GAT | TAC | ACT | GTT | TTC | TAC | AAC | TCA--- | ACT | TCT | TTT | TCG | ACT | TTC | AAC | TGT | TAC | GGA | GTC | TCT | CCT | TCT | AAG | TTG | ATT | GAT | TTG | TGT | TTT | ACA | AGT | GTG | TAT | GCA | GAC | ACA | TTT | TTG | ATA | AGA | TTT | TCA | GAA | GTC | AGA | CAA | GTG | GCA | CCT | GGT | CAG | ACT | GGT | GTT | ATT | GCA | GAC | TAC | AAT | TAT | AAA | CTA | CCT | GAC | GAC | TTT | ACA | GGC | TGT | GTT | ATA | GCT | TGG | AAC | A-- | --- | --- | --- | --- | -CT | GCT | AAG | CAA | GAC | GTC | GGT | AGC | TAT | TTT | TAT | AGG | TCT | CAT | CGC | TCT | AGC | AAA | TTA | AAA | CCC | TTT | GAA | AGA | GAC | CTT | TCA | TCA | G-- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | -AA | GA- | --- | --A | AAT | GGT | GTC | CGT | ACA | CTC | AGT | ACG | TAT | GAT | TTT | AAT | CAA | TAT | GTA | CCT | CTT | GAG | TAC | CAA | GCC | ACT | AGA | GTT | GTT | GTT | CTT | TCA | TTT | GAA | CTC | CTC | AAT | GCA | CCT | GCT | ACA | GTG | TGT | GGA | CCA | AAA | TTA | TCC | ACT | TCA | TTG | GTT | AAG | AAC | CAG | TGC | GTC | AAC | TTC | AAC | TTT | AAT | GGA | TTT | AAA | GGT | ACT | GGT | GTG | TTG | ACC | GAC | TCG | TCT | AAA | ACG | TTT | CAG | TCT | TTT | CAG | CAG | TTT | GGT | CGG | GAT | GCA | TCT | GAT | TTT | ACT | GAT | TCA | GTG | CGT | GAC | CCG | CAA | ACT | TTA | CGG | ATA | CTT | GAC | ATT | TCA | CCG | TGC | TCT | TTT | GGT | GGT | GTG | AGT | GTC | ATA | ACA | CCA | GGA | ACT | AAC | ACT | TCA | TCT | GCA | GTG | GCT | GTT | CTT | TAC | CAA | GAT | GTA | AAC | TGC | ACT | GAT | GTT | CCC | ACA | ACA | TTA | CAT | GCA | GAT | CAA | TTA | GCA | CCC | TCT | TGG | CGT | GTT | TAT | ACC | ACT | GGA | CCC | TAT | G------TT | TTC | CAA | ACA | CAA | GCA | GGG | TGC | CTT | ATA | GGA | GCT | GAA | CAT | GTC | AAC | GCA | TCC | TAT | CAG | TGT | GAC | ATT | CCA | ATT | GGT | GCT | GGC | ATT | TGT | GCT | AGC | TAT | CAT | ACA | GCC | TCA | CTT | T-- | --- | --- | --- | -TA | TGG | AGT | ACA | GGT | CAA | AAA | TCT | ATT | GTG | GCC | TAT | ACT | ATG | TCA | TTA | GGT | GCT | GAA | AAT | TCT | GTG | GCA | TAT | GCT | AAT | AAT | TCC | ATT | GCC | ATA | CCC | ACT | AAT | TTT | TCT | ATT | AGT | GTC | ACT | ACT | GAA | GTG | ATG | CCT | GTT | TCT | ATG | GCT | AAA | ACA | TCT | GTC | GAT | TGT | ACT | ATG | TAC | ATC | TGT | GGT | GAT | TCT | TTA | GAG | TGC | AGT | AAC | CTA | CTG | CTT | CAG | TAT | GGT | AGC | TTC | TGT | ACC | CAA | CTT | AAC | CGT | GCC | CTT | TCT | GGC | ATT | GCT | GTA | GAA | CAG | GAC | AAA | AAC | ACC | CAA | GAG | GTG | TTT | GCC | CAG | GTT | AAA | CAG | ATG | TAT | AAA | ACA | CCA | ACT | ATA | AGA | GAT | TTT | GGT | GGT | TTT | AAT | TTC | TCT | CAG | ATA | TTA | CCA | GAC | CCT | TTG | AAA | CCT | ACT | AAG | CGT | TCT | TTT | ATA | GAG | GAT | TTG | CTC | TAC | AAC | AAA | GTA | ACA | CTC | GCG | GAT | GCA | GGC | TTC | ATG | AAA | CAG | TAT | GCA | GAC | TGT | TTG | GGT | GGT | ATT | AAC | GCA | AGA | GAT | CTC | ATC | TGT | GCT | CAA | AAG | TTT | AAT | GGA | CTC | ACA | GTC | TTA | CCA | CCT | TTG | CTC | ACT | GAT | GAC | ATG | ATT | GCA | GCC | TAC | ACT | GCT | GCG | CTC | ATT | AGT | GGC | ACT | GCC | ACT | GCA | GGC | TGG | ACT | TTC | GGT | GCA | GGT | GCA | GCC | CTT | CAA | ATA | CCT | TTT | GCT | ATG | CAA | ATG | GCT | TAT | AGG | TTT | AAC | GGC | ATT | GGA | GTT | ACT | CAA | AAT | GTT | CTC | TAC | GAG | AAC | CAA | AAA | CAA | ATT | GCC | AAT | CAG | TTC | AAT | AAG | GCT | ATT | ACT | CAA | ATT | CAA | GAA | TCA | CTC | ACA | ACT | ACA | TCG | ACA | GCA | TTG | GGC | AAG | CTG | CAA | GAC | GTA | GTC | AAC | CAG | AAT | GCT | CAA | GCA | TTA | AAT | ACA | CTT | GTC | AAA | CAA | CTT | AGC | TCC | AAT | TTT | GGT | GCT | ATT | TCA | AGT | GCT | TTG | AAT | GAT | ATC | CTC | TCA | CGA | CTT | GAC | AAA | GTT | GAG | GCA | GAG | GTG | CAA | ATT | GAC | AGG | TTG | ATT | ACA | GGC | AGA | TTA | CAA | AGC | CTC | CAA | ACC | TAT | GTA | ACA | CAA | CAA | TTA | ATC | AGA | GCT | GCT | GAA | ATC | AGG | ACT | TCT | GCT | AAT | CTT | GCT | GCT | ACT | AAA | ATG | TCT | GAG | TGT | GTT | CTT | GGA | CAA | TCG | AAA | AGA | GTT | GAT | TTT | TGT | GGA | AAA | GGT | TAT | CAC | CTT | ATG | TCT | TTC | CCT | CAA | TCC | GCT | CCA | CAT | GGT | GTT | GTG | TTC | TTA | CAT | GTC | ACT | TAT | GTG | CCA | TCA | CAA | GAA | AGG | AAC | TTC | ACC | ACT | GCC | CCA | GCA | ATT | TGT | CAT | GAA | GGC | AAA | GCA | TAC | TTC | CCT | CGT | GAA | GGT | GTG | TTT | GTA | TCT | AAT | GGC | AGT | TCT | TGG | TTT | ATT | ACA | CAG | AGG | AAT | TTT | TAT | TCA | CCA | CAG | ATA | ATC | ACA | ACA | GAC | AAT | ACA | TTT | GTC | GCC | GGA | AGT | TGT | GAT | GTC | GTC | ATT | GGA | ATC | ATT | AAT | AAT | ACA | GTT | TAT | GAT | CCT | CTG | CAA | CCT | GAG | CTT | GAC | TCA | TTT | AAA | CAA | GAG | CTA | GAT | AAG | TAC | TTC | AAA | AAT | CAT | ACA | TCA | CCT | GAT | GTT | GAT | CTT | GGC | GAC | ATT | TCA | GGC | ATC | AAT | GCT | TCT | GTC | GTC | GAT | ATT | CAG | AAA | GAA | ATT | GAC | CGC | CTC | AAT | GAG | GTT | GCC | AAA | AAT | TTA | AAT | GAA | TCA | CTC | ATT | GAC | CTT | CAA | GAA | CTT | GGC | AAA | TAT | GAG | CAA | TAT | ATT | AAA | TGG | CCT | TGG | TAT | GTC | TGG | CTT | GGC | TTT | ATA | GCA | GGG | TTA | GTA | GGA | TTA | TTT | ATG | GCC | ATC | ATT | CTT | CTT | TGT | TAC | TTT | ACT | AGC | TGC | TGT | AGC | TGC | TGT | AAA | GGC | ATG | TGC | TCC | TGT | GGT | TCT | TGC | TGC | AGA | TTT | GAT | GAA | GAT | GAC | TCT | GAG | CCA | GTG | CTC | AAA | GGA | GTC | AAA | TTA | CAT | TAC | ACA | TAA |
JX993987_Bat_CoV_Rp_Shaanxi2011 | TTC | TTT | TCC | TTT | --- | CTT | CCG | CTA | AAG | CTC | AGG | AAG | G---TT | GTG | GTG | TTA | TCT | CCA | ATA | AGC | C-- | ACA | ACG | CAC | ATT | TGA | --C | CAG | TAC | TCC | TCC | ACT | TTT | AGA | GGG | GTT | TAC | TAT | AAT | GAT | GAC | ATT | TTT | AGG | TCA | GAC | GTG | CTA | CAT | TTG | ACT | CAG | GAT | TAC | TTT | TTG | CCT | TTT | AAC | ACT | AAT | GTT | ACT | AGG | TAT | TTG | TCT | CTG | AAT | G-- | -CG | GCA | CAA | AAT | ACT | ATA | GTC | TAC | TTT | GAC | AAT | CAT | GTA | ATA | CCT | TTC | TAC | GAC | GGT | ATT | TAC | TTT | GCT | GCC | ACA | GAG | CGG | TCC | AAT | GTC | ATT | CGC | GGC | TGG | ATT | TTC | GGT | TCA | ACT | TTT | GAC | AAC | CGA | TCA | CAG | TCT | GCC | ATT | ATA | GTG | AAC | AAT | TCT | ACA | CAC | ATT | TTA | GTT | AAG | GTG | TGT | AAT | TTT | GTT | TTA | TGT | ACT | GAG | CCC | ATG | TTT | ACG | GTG | TCT | CGT | --- | --- | --- | --- | --- | --- | AAT | CAG | CAT | TAC | AAA | TCA | TGG | GTT | TAT | CAA | CAT | GCT | AGA | AAT | TGC | ACC | TAT | GAT | GTT | GCT | TAT | CCT | AGT | TTT | CAA | TTA | GAT | GTC | TCT | CTAAAG | AAT | AAT | GTT | AAT | TTT | CAA | CAT | TTG | AGG | GAG | TTC | ATT | TTT | AAA | AAT | GTG | GAT | GGC | TTC | CTA | AAG | ATT | TAT | TCT | TCT | TAT | GAG | CCC | ATC | AAT | GTT | GTT | AGT | GG------------C | ATA | CCT | AGT | GGC | TTT | TCA | GTA | CTT | AAG | CCA | GTT | ATG | AGC | TTG | CCG | TTG | GGT | ATT | AAT | ATT | ACT | GGC | ATG | CGT | GTT | GTT | ATG | ACT | ATG | TTT | AGC | AAC | ACG | CAA | GC- | --- | --- | --- | --- | --- | --T | AAT | TTT | CTT | ACA | GAA | AAT | GCT | GCA | TAC | TAT | GTA | GGC | TAT | CTC | AAG | CCT | AGA | ACT | TTC | ATG | CTA | CAA | TTT | AAT | ACC | AAT | GGC | ACC | ATC | GTT | AAT | GCC | GTT | GAT | TGT | TCT | CAA | GAT | CCA | CTT | TCG | GAG | TTA | AAA | TGC | ACA | CTC | AAA | AAT | TTT | AAC | ATC | ACT | AAA | GGA | ATC | TAT | CAA | ACA | TCT | AAC | TTC | AGA | GTT | TCA | CCA | ACG | CAA | GAA | GTT | GTT | AGA | TTC | CCA | AAC | ATT | ACA | AAC | CGT | TGT | CCA | TTT | GAC | AAG | GTT | TTT | AAT | GCT | ACG | CGC | TTT | CCT | TCT | GTG | TAT | GCG | TGG | GAG | AGA | ACT | AAA | ATT | TCT | GAT | TGT | GTT | GCG | GAT | TAC | ACC | GTT | CTC | TAC | AAC | TCT--- | ACG | TCT | TTC | TCA | ACT | TTC | AAG | TGT | TAT | GGA | GTT | TCT | CCT | TCT | AAG | TTG | ATT | GAT | CTT | TGC | TTC | ACA | AGT | GTG | TAT | GCC | GAT | ACA | TTC | TTG | ATA | AGG | TCC | TCA | GAA | GTG | AGA | CAA | GTT | GCA | CCG | GGT | GAA | ACT | GGT | GTT | ATT | GCT | GAC | TAT | AAT | TAT | AAA | CTG | CCT | GAT | GAT | TTT | ACA | GGC | TGT | GTA | ATA | GCT | TGG | AAC | A-- | --- | --- | --- | --- | -CT | GCA | AAT | CAA | GAC | CAA | GGT | CAA | TAT | TAT | TAT | AGG | TCT | TCT | AGA | AAG | GAA | AAA | CTC | AAA | CCT | TTT | GAG | AGG | GAT | TTG | TCA | TCA | G-- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | -AT | GA- | --- | --A | AAT | GGT | GTG | TAT | ACT | CTT | AGT | ACT | TAT | GAC | TTT | TAC | CCT | AGT | GTG | CCA | CTT | GAC | TAT | CAG | GCT | ACT | AGG | GTA | GTT | GTC | CTT | TCA | TTT | GAG | CTT | CTT | AAT | GCA | CCT | GCA | ACA | GTG | TGT | GGA | CCT | AAA | CTA | TCC | ACA | ACA | CTA | GTA | AAG | AAT | CAG | TGT | GTT | AAT | TTC | AAC | TTC | AAT | GGA | CTT | AAA | GGT | ACT | GGT | GTG | TTG | ACT | GCC | TCT | TCT | AAG | AAG | TTT | CAG | TCT | TTT | CAA | CAA | TTT | GGC | AGA | GAT | GCG | TCT | GAC | TTC | ACT | GAT | TCA | GTA | CGC | GAC | CCT | CAA | ACA | CTT | GAA | ATA | CTT | GAC | ATT | TCA | CCT | TGT | TCA | TTC | GGT | GGT | GTG | AGT | GTA | ATT | ACA | CCT | GGA | ACA | AAT | GCT | TCT | ACA | GAA | GTG | GCT | GTT | CTA | TAC | CAA | GAT | GTA | AAC | TGC | ACT | GAT | GTT | CCA | ACA | GCA | ATT | AAT | GCA | GAC | CAA | TTA | ACA | CCA | GCC | TGG | CGC | GTT | TAT | TCC | ACT | GGA | ATA | AAT | G------TG | TTT | CAA | ACC | CAA | GCT | GGC | TGT | CTC | ATA | GGA | GCT | GAA | CAT | GTC | AAT | GCT | TCT | TAT | GAG | TGT | GAC | ATT | CCA | ATT | GGT | GCT | GGT | ATT | TGT | GCT | AGC | TAC | CAT | ACA | GCT | TCA | GTT | T-- | --- | --- | --- | -TG | CGC | AGT | ACA | GGC | CAG | AAA | TCA | ATT | GTG | GCT | TAT | ACT | ATG | TCA | CTA | GGT | GCA | GAA | AAT | TCA | ATT | GCT | TAT | GCT | AAT | AAC | TCA | ATT | GCC | ATA | CCT | ACG | AAT | TTT | TCA | ATC | AGC | GTC | ACG | ACT | GAA | GTG | ATG | CCT | GTT | TCA | ATG | GCT | AAA | ACA | TCA | GTA | GAC | TGT | ACA | ATG | TAC | ATC | TGT | GGT | GAT | TCT | TTG | GAG | TGC | AGT | AAC | CTA | CTC | TTG | CAG | TAT | GGA | AGC | TTC | TGC | ACA | CAA | TTA | AAT | CGT | GCC | CTT | ACT | GGC | ATT | GCT | ATT | GAA | CAG | GAC | AAG | AAC | ACT | CAA | GAA | GTT | TTT | GCC | CAG | GTT | AAA | CAA | ATG | TAC | AAG | ACA | CCA | GCC | ATA | AAA | GAT | TTT | GGT | GGT | TTC | AAT | TTC | TCA | CAA | ATA | TTG | CCT | GAT | CCT | TCA | AAG | CCA | ACA | AAG | AGA | TCG | TTT | ATT | GAG | GAC | TTG | CTC | TTC | AAC | AAA | GTG | ACA | CTC | GCT | GAT | GCT | GGC | TTT | ATG | AAG | CAA | TAC | GGT | GAA | TGC | CTA | GGC | GAT | ATT | AGT | GCT | AGA | GAT | CTC | ATT | TGT | GCA | CAA | AAA | TTC | AAC | GGA | CTG | ACT | GTC | TTA | CCA | CCA | TTG | CTC | ACA | GAT | GAA | ATG | ATT | GCT | GCC | TAC | ACT | GCT | GCG | CTA | GTT | AGT | GGT | ACT | GCC | ACT | GCT | GGC | TGG | ACG | TTT | GGT | GCT | GGA | GCT | GCC | CTT | CAA | ATT | CCC | TTT | GCT | ATG | CAA | ATG | GCA | TAC | AGG | TTC | AAT | GGC | ATT | GGA | GTA | ACC | CAA | AAC | GTT | CTC | TAT | GAG | AAC | CAA | AAA | CAG | ATT | GCC | AAC | CAA | TTC | AAC | AAG | GCA | ATC | AGT | CAA | ATT | CAA | GAA | TCA | CTT | ACA | ACA | ACA | TCG | ACT | GCA | TTG | GGC | AAG | CTG | CAA | GAC | GTA | GTC | AAT | CAG | AAT | GCT | CAA | GCA | TTA | AAT | ACA | CTT | GTC | AAA | CAG | CTT | AGC | TCC | AAT | TTT | GGT | GCT | ATT | TCA | AGT | GTT | TTG | AAT | GAC | ATT | CTT | TCA | CGA | CTT | GAT | AAA | GTT | GAG | GCA | GAA | GTA | CAA | ATT | GAT | AGG | TTG | ATA | ACA | GGC | AGG | TTA | CAG | AGC | CTA | CAA | ACA | TAT | GTA | ACA | CAA | CAA | CTA | ATC | AGA | GCT | GCT | GAA | ATC | AGA | GCT | TCT | GCT | AAC | CTT | GCT | GCT | ACT | AAA | ATG | TCT | GAG | TGC | GTT | CTT | GGA | CAA | TCA | AAA | AGA | GTT | GAC | TTT | TGT | GGA | AAA | GGC | TAC | CAT | CTA | ATG | TCT | TTC | CCT | CAA | GCT | GCT | CCG | CAT | GGT | GTT | GTA | TTC | TTA | CAT | GTC | ACG | TAT | GTG | CCA | TCT | CAA | GAA | AGA | AAC | TTC | ACC | ACA | GCC | CCA | GCG | ATT | TGT | CAT | GAA | GGC | AAG | GCA | TAC | TTC | CCT | CGT | GAA | GGT | GTC | TTT | GTA | TCT | AAT | GGC | ACT | TCT | TGG | TTT | ATT | ACA | CAG | AGG | AAC | TTC | TAT | TCA | CCA | CAG | ATA | ATT | ACA | ACA | GAC | AAT | ACA | TTT | GTT | GCT | GGA | AGT | TGT | AAT | GTC | GTA | ATT | GGC | ATC | ATT | AAT | AAT | ACA | GTT | TAT | GAT | CCT | CTG | CAA | CCT | GAG | CTT | GAC | TCA | TTC | AAA | GAA | GAG | CTG | GAC | AAG | TAC | TTT | AAA | AAT | CAT | ACA | TCA | CCA | GAT | GTT | GAT | CTT | GGC | GAC | ATT | TCA | GGC | ATT | AAT | GCT | TCT | GTC | GTC | AAC | ATT | CAA | AAA | GAA | ATT | GAC | CGC | CTC | AAT | GAG | GTC | GCC | AAA | AAT | CTA | AAT | GAA | TCA | CTC | ATT | GAC | CTC | CAG | GAA | CTT | GGA | AAA | TAT | GAG | CAA | TAC | ATC | AAG | TGG | CCT | TGG | TAT | GTT | TGG | CTC | GGC | TTC | ATT | GCT | GGA | CTA | ATT | GCC | ATC | GTC | ATG | GTT | ACA | ATC | TTG | CTT | TGT | TGC | ATG | ACC | AGC | TGT | TGC | AGT | TGC | CTC | AAG | GGT | GCA | TGC | TCT | TGC | GGT | TCT | TGC | TGC | AAA | TTT | GAT | GAG | GAC | GAC | TCT | GAG | CCA | GTG | CTC | AAA | GGA | GTC | AAA | TTA | CAC | TAC | ACA | TAA |
GQ153542_Bat_SARS_CoV_HKU3_7 | TTG | CTT | TCC | TAG | CTA | GTC | TAG | CTA | AAG | CAC | AAG | AAG | G---AT | GTG | GCA | TTA | TCA | GTC | GAA | AGC | C-- | GCA | GCC | AAA | AAT | GGC | --A | CAA | GTC | TCT | TCT | TCT | CGT | CGA | GGT | GTG | TAC | TAT | AAT | GAT | GAT | ATT | TTT | CGC | TCT | GAT | GTG | CTA | CAC | CTC | ACA | CAG | GAT | TAT | TTC | CTG | CCA | TTC | GAT | TCC | AAT | CTA | ACA | CAG | TAC | TTT | TCT | CTT | AAT | G-- | -TT | GAC | TCA | GAT | AGG | TAT | ACC | TAT | TTT | GAC | AAC | CCT | ATA | CTA | GAC | TTT | GGT | GAT | GGC | GTT | TAT | TTT | GCT | GCC | ACC | GAA | AAG | TCT | AAT | GTA | GTA | AGA | GGC | TGG | ATT | TTT | GGT | TCG | TCT | TTT | GAT | AAT | ACC | ACC | CAG | TCA | GCT | GTC | ATA | GTT | AAT | AAT | TCA | ACA | CAC | ATT | ATT | ATA | CGT | GTG | TGT | AAT | TTC | AAC | TTG | TGT | AAA | GAA | CCC | ATG | TAC | ACT | GTT | AGT | AGG | --- | --- | --- | --- | --- | --- | GGT | ACA | CAA | CAG | AAT | TCT | TGG | GTT | TAT | CAA | AGT | GCA | TTT | AAT | TGC | ACC | TAT | GAC | AGA | GTG | GAG | AAG | AGC | TTT | CAG | CT- | --C | GAT | ACA | GTTCCT | AAA | ACT | GGA | AAT | TTT | AAG | GAC | TTA | CGT | GAG | TAC | GTC | TTC | AAG | AAT | AGG | GAT | GGT | TTC | CTT | AGT | GTT | TAT | CAA | ACC | TAT | ACT | GCT | GTT | AAT | TTA | CCC | AGA | GG------------T | TTG | CCT | GAA | GGT | TTT | TCA | GTT | TTA | AGA | CCA | ATT | CTC | AAA | TTA | CCT | TTT | GGA | ATT | AAT | ATC | ACT | TCT | TAT | AGA | GTA | GTT | ATG | GCA | ATG | TTT | AGC | CAA | ACT | ACT | TC- | --- | --- | --- | --- | --- | --T | AAT | TTT | CTA | CCA | GAA | AGT | GCT | GCT | TAT | TAT | GTT | GGT | AAT | CTT | AAA | TAT | TCT | ACC | TTC | ATG | CTG | CGA | TTT | AAT | GAA | AAT | GGG | ACC | ATC | ACG | GAT | GCT | GTG | GAT | TGT | TCC | CAA | AAC | CCA | CTT | GCT | GAA | TTA | AAA | TGC | ACC | ATT | AAA | AAT | TTT | AAT | GTT | GAC | AAA | GGA | ATC | TAC | CAA | ACA | TCC | AAC | TTT | AGA | GTT | TCA | CCC | ACC | CAA | GAG | GTT | ATT | AGA | TTC | CCT | AAC | ATT | ACA | AAC | CGC | TGT | CCT | TTT | GAC | AGG | GTT | TTT | AAT | GCA | AGC | CGC | TTT | CCT | AGT | GTT | TAT | GCA | TGG | GAG | CGG | ACG | AAA | ATT | TCT | GAG | TGT | GTT | GCA | GAC | TAC | ACA | GTT | CTC | TAC | AAC | TCA--- | ACC | TCT | TTC | TCA | ACT | TTT | AAA | TGT | TAT | GGA | GTG | TCT | CCA | TCT | AAG | TTG | ATT | GAC | TTA | TGC | TTT | ACA | AGT | GTG | TAT | GCT | GAT | ACA | TTC | TTG | ATA | AGA | TCT | TCT | GAA | GTA | AGA | CAA | GTT | GCA | CCA | GGT | GAA | ACT | GGT | GTT | ATT | GCT | GAC | TAC | AAT | TAC | AAG | TTG | CCT | GAT | GAT | TTC | ACT | GGC | TGT | GTA | ATT | GCT | TGG | AAT | A-- | --- | --- | --- | --- | -CT | GCT | AAA | CAG | GAT | ACT | GGC | AAT | TAT | TAC | TAC | AGA | TCT | CAT | CGC | AAG | ACT | AAG | TTA | AAG | CCT | TTT | GAG | AGA | GAT | CTG | TCT | TCT | G-- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | -AC | GA- | --C | GGT | AAT | GGT | GTG | TAC | ACA | CTT | TCA | ACA | TAT | GAT | TTT | AAC | CCT | AAT | GTT | CCA | GTA | GCA | TAT | CAG | GCT | ACT | AGG | GTT | GTT | GTA | CTC | TCT | TTT | GAA | CTT | CTT | AAT | GCA | CCT | GCT | ACA | GTT | TGT | GGA | CCT | AAA | TTA | TCC | ACA | CAA | CTA | GTT | AAG | AAC | CAG | TGT | GTT | AAT | TTC | AAT | TTC | AAT | GGA | CTT | AAA | GGT | ACT | GGT | GTT | TTG | ACT | CCT | TCT | TCA | AAA | AGA | TTC | CAG | TCA | TTT | CAA | CAA | TTT | GGT | CGT | GAC | ACA | TCT | GAC | TTT | ACG | GAT | TCA | GTA | CGT | GAC | CCA | CAG | ACT | TTA | GAA | ATA | CTT | GAC | ATT | TCA | CCT | TGT | TCC | TTT | GGT | GGT | GTT | AGT | GTT | ATC | ACA | CCT | GGA | ACG | AAT | GCC | TCA | TCA | GAG | GTG | GCT | GTT | CTC | TAT | CAA | GAT | GTA | AAT | TGC | ACT | GAT | GTC | CCT | ACA | GCG | ATT | CGT | GCA | GAC | CAA | TTA | ACA | CCT | GCT | TGG | CGC | GTT | TAT | TCC | ACT | GGA | GTA | AAT | G------TG | TTT | CAA | ACA | CAA | GCT | GGC | TGT | CTT | ATA | GGA | GCT | GAG | CAT | GTC | AAC | GCC | TCT | TAT | GAG | TGT | GAC | ATT | CCT | ATT | GGT | GCA | GGC | ATT | TGT | GCT | AGT | TAC | CAT | ACA | GCT | TCC | GTT | C-- | --- | --- | --- | -TA | CGT | AGT | ACC | GGC | CAG | AAA | TCA | ATT | GTT | GCC | TAT | ACT | ATG | TCA | CTG | GGT | GCT | GAA | AAT | TCC | ATT | GCA | TAC | GCT | AAT | AAT | TCA | ATT | GCC | ATA | CCT | ACA | AAT | TTT | TCA | ATC | AGT | GTC | ACT | ATA | GAA | GTG | ATG | CCT | GTT | TCA | ATG | GCT | AAA | ACA | TCC | GTG | GAT | TGT | ACA | ATG | TAC | ATC | TGT | GGT | GAC | TCT | TTG | GAG | TGC | AGC | AAC | CTA | CTA | TTG | CAG | TAT | GGA | AGC | TTT | TGC | ACA | CAG | CTC | AAT | CGC | GCC | CTT | ACT | GGC | ATT | GCT | ATA | GAA | CAG | GAC | AAA | AAC | ACT | CAG | GAA | GTC | TTT | GCC | CAG | GTT | AAA | CAA | ATG | TAC | AAG | ACA | CCT | GCC | ATA | AAA | GAT | TTT | GGC | GGT | TTC | AAT | TTC | TCA | CAA | ATA | TTG | CCT | GAC | CCT | TCA | AAG | CCA | ACG | AAG | AGA | TCA | TTT | ATT | GAA | GAC | CTG | CTC | TTC | AAC | AAA | GTG | ACT | CTC | GCT | GAT | GCT | GGC | TTT | ATG | AAA | CAA | TAT | GGT | GAA | TGC | CTA | GGT | GAT | GTT | AGT | GCT | AGA | GAC | CTT | ATC | TGT | GCC | CAG | AAG | TTC | AAT | GGA | CTT | ACT | GTG | CTA | CCA | CCA | CTG | CTC | ACA | GAT | GAG | ATG | ATT | GCT | GCA | TAT | ACA | GCT | GCG | CTA | GTT | AGT | GGT | ACT | GCT | ACG | GCA | GGC | TGG | ACA | TTC | GGT | GCA | GGG | GCA | GCT | CTC | CAA | ATA | CCG | TTC | GCT | ATG | CAA | ATG | GCC | TAT | AGG | TTT | AAT | GGC | ATT | GGA | GTT | ACT | CAA | AAC | GTT | CTC | TAT | GAG | AAC | CAG | AAG | CTG | ATA | GCT | AAT | CAG | TTT | AAT | AGT | GCT | ATA | GGC | AAA | ATT | CAA | GAC | TCA | TTA | TCA | TCT | ACT | GCG | AGT | GCA | CTT | GGA | AAA | CTT | CAG | GAT | GTT | GTT | AAC | CAA | AAT | GCA | CAA | GCT | CTT | AAC | ACG | CTT | GTT | AAA | CAG | CTT | AGC | TCT | AAT | TTT | GGA | GCT | ATT | TCG | AGT | GTG | TTA | AAT | GAT | ATT | CTT | TCT | CGA | CTT | GAT | AAA | GTT | GAG | GCG | GAG | GTT | CAA | ATC | GAT | AGG | TTG | ATC | ACA | GGC | AGA | TTG | CAA | AGT | CTT | CAA | ACC | TAT | GTA | ACA | CAG | CAA | CTT | ATC | AGA | GCT | GCT | GAA | ATC | AGA | GCT | TCT | GCT | AAT | CTT | GCT | GCT | ACT | AAA | ATG | TCT | GAG | TGT | GTC | CTC | GGA | CAA | TCG | AAA | AGA | GTT | GAT | TTT | TGT | GGA | AAA | GGC | TAC | CAT | CTT | ATG | TCT | TTT | CCT | CAA | TCA | GCA | CCA | CAC | GGT | GTC | GTT | TTT | CTA | CAC | GTT | ACA | TAC | GTG | CCT | TCA | CAA | GAG | AGA | AAC | TTC | ACC | ACA | GCT | CCA | GCC | ATT | TGT | CAT | GAA | GGC | AAA | GCT | TAC | TTC | CCT | CGT | GAA | GGT | GTT | TTC | GTT | TCT | AAT | GGC | ACT | TCT | TGG | TTT | ATT | ACG | CAG | AGG | AAT | TTT | TAC | TCT | CCA | CAA | TTA | ATT | ACA | ACA | GAC | AAT | ACT | TTT | GTT | TCT | GGT | AAT | TGT | GAT | GTC | GTA | ATC | GGC | ATC | ATT | AAT | AAC | ACT | GTT | TAC | GAT | CCT | CTG | CAA | CCT | GAG | CTT | GAC | TCA | TTT | AAA | GAA | GAG | CTG | GAC | AAG | TAC | TTC | AAA | AAT | CAT | ACA | TCA | CCA | GAT | GTT | GAT | CTT | GGC | GAC | ATT | TCA | GGC | ATT | AAT | GCT | TCA | GTC | GTC | AAT | ATT | CAA | AAG | GAG | ATT | GAC | CGC | CTC | AAT | GAG | GTT | GCC | AAA | AAC | CTA | AAT | GAA | TCA | CTC | ATT | GAC | CTC | CAA | GAA | CTT | GGG | AAA | TAT | GAG | CAA | TAC | ATC | AAG | TGG | CCG | TGG | TAT | GTT | TGG | CTC | GGC | TTT | ATT | GCT | GGA | CTA | ATT | GCC | ATC | GTC | ATG | GTT | ACA | ATC | TTG | CTT | TGT | TGC | ATG | ACC | AGC | TGT | TGC | AGT | TGT | CTC | AAG | GGT | GCA | TGC | TCT | TGT | GGT | TCT | TGC | TGC | AAA | TTT | GAT | GAG | GAC | GAC | TCT | GAG | CCA | GTG | CTC | AAG | GGA | GTC | AAA | TTA | CAT | TAC | ACA | TAA |
DQ022305_Bat_SARS_CoV_HKU3_1 | TTG | CTT | TCT | TAG | CTA | ATT | TAG | CTA | AAG | CAC | AGG | AAG | G---AT | GCG | GTA | TCA | TCA | GTA | GAA | AAC | C-- | GCA | ACC | TAA | AAT | GGC | --A | CAA | GTC | TCA | TCT | TCT | CGT | CGG | GGC | GTT | TAT | TAT | AAT | GAT | GAC | ATT | TTC | CGT | TCT | GAT | GTG | TTA | CAC | CTC | ACA | CAG | GAT | TAC | TTC | CTG | CCA | TTT | GAC | TCA | AAT | TTA | ACT | CAG | TAC | TTT | TCG | CTT | AAT | G-- | -TG | GAT | TCA | GAT | AGG | TAT | ACC | TAT | TTT | GAC | AAC | CCC | ATA | CTA | GAC | TTT | GGT | GAT | GGC | GTT | TAT | TTC | GCT | GCC | ACT | GAA | AAG | TCT | AAC | GTA | ATA | AGA | GGC | TGG | ATT | TTT | GGT | TCA | TCT | TTT | GAT | AAC | ACC | ACC | CAG | TCA | GCT | GTT | ATA | GTT | AAT | AAT | TCA | ACA | CAC | ATT | ATT | ATA | CGT | GTG | TGT | AAT | TTT | AAC | TTA | TGT | AAA | GAA | CCC | ATG | TAT | ACT | GTT | AGT | AGA | --- | --- | --- | --- | --- | --- | GGT | ACA | CAG | CAA | AAT | GCC | TGG | GTT | TAT | CAG | AGT | GCA | TTT | AAT | TGT | ACA | TAT | GAC | CGA | GTG | GAA | AAG | AGT | TTT | CAA | CT- | --T | GAC | ACT | ACTCCT | AAA | ACT | GGA | AAT | TTT | AAA | GAC | CTA | CGT | GAG | TAT | GTC | TTT | AAA | AAT | AGG | GAT | GGC | TTT | CTG | TCT | GTC | TAC | CAA | ACT | TAT | ACT | GCT | GTT | AAT | TTA | CCC | AGA | GG------------A | CTA | CCC | ACG | GGT | TTC | TCA | GTC | TTG | AAA | CCA | ATT | TTA | AAA | TTG | CCC | TTT | GGA | ATT | AAT | ATC | ACT | TCT | TAT | AGA | GTA | GTT | ATG | GCA | ATG | TTT | AGC | CAA | ACT | ACT | TC- | --- | --- | --- | --- | --- | --T | AAT | TTT | TTA | CCA | GAA | AGT | GCT | GCT | TAT | TAT | GTT | GGT | AAT | CTT | AAA | TAT | TCT | ACC | TTC | ATG | CTC | CGA | TTT | AAT | GAA | AAT | GGG | ACG | ATC | ACG | GAT | GCT | GTA | GAT | TGT | TCC | CAA | AAT | CCT | CTT | GCT | GAA | TTA | AAA | TGC | ACC | ATT | AAA | AAT | TTC | AAT | GTT | GAC | AAA | GGA | ATC | TAC | CAA | ACA | TCC | AAC | TTC | AGA | GTT | TCA | CCC | ACT | CAA | GAG | GTT | ATT | AGA | TTT | CCT | AAC | ATT | ACA | AAT | CGC | TGT | CCT | TTT | GAC | AAG | GTT | TTT | AAT | GCT | ACT | CGC | TTT | CCT | AAT | GTT | TAT | GCA | TGG | GAG | AGA | ACA | AAA | ATC | TCT | GAT | TGT | GTT | GCT | GAC | TAC | ACT | GTT | CTC | TAC | AAC | TCA--- | ACC | TCT | TTC | TCG | ACT | TTT | AAA | TGT | TAT | GGA | GTG | TCT | CCA | TCT | AAG | TTG | ATT | GAC | CTA | TGC | TTT | ACA | AGT | GTG | TAT | GCT | GAT | ACA | TTC | TTG | ATA | AGA | TCT | TCT | GAA | GTA | AGA | CAA | GTT | GCA | CCA | GGT | GAA | ACT | GGT | GTT | ATT | GCT | GAC | TAC | AAT | TAC | AAG | TTG | CCT | GAT | GAT | TTC | ACT | GGC | TGT | GTA | ATT | GCT | TGG | AAT | A-- | --- | --- | --- | --- | -CT | GCT | AAA | CAT | GAT | ACT | GGC | AAT | TAT | TAC | TAC | AGA | TCT | CAT | CGC | AAG | ACT | AAG | TTA | AAG | CCT | TTT | GAG | AGA | GAC | CTG | TCT | TCT | G-- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | -AC | GA- | --T | GGT | AAT | GGT | GTG | TAT | ACA | CTC | TCA | ACA | TAT | GAC | TTT | AAC | CCT | AAC | GTT | CCA | GTA | GCA | TAT | CAG | GCT | ACT | AGG | GTT | GTT | GTA | CTC | TCT | TTT | GAA | CTT | CTT | AAT | GCA | CCT | GCT | ACA | GTT | TGT | GGA | CCT | AAA | TTA | TCC | ACA | GAA | CTA | GTT | AAG | AAC | CAG | TGT | GTT | AAT | TTC | AAT | TTC | AAT | GGA | CTT | AAA | GGT | ACT | GGT | GTT | TTG | ACT | TCT | TCT | TCA | AAA | AGA | TTC | CAG | TCA | TTT | CAA | CAA | TTT | GGT | CGT | GAC | ACA | TCT | GAC | TTT | ACG | GAT | TCA | GTA | CGT | GAC | CCA | CAG | ACT | TTA | GAA | ATA | CTT | GAC | ATT | TCA | CCT | TGT | TCC | TTT | GGT | GGT | GTT | AGT | GTT | ATC | ACA | CCT | GGA | ACG | AAC | GCC | TCA | TCA | GAG | GTA | GCT | GTT | CTC | TAT | CAA | GAT | GTA | AAT | TGC | ACT | GAT | GTC | CCT | ACA | GCA | ATA | CGT | GCA | GAT | CAA | TTA | ACA | CCT | GCT | TGG | CGC | GTT | TAT | TCC | ACT | GGA | GTA | AAT | G------TG | TTT | CAA | ACA | CAA | GCT | GGC | TGT | CTT | ATA | GGA | GCT | GAG | CAT | GTC | AAC | GCC | TCT | TAT | GAG | TGT | GAC | ATT | CCT | ATT | GGT | GCA | GGC | ATT | TGT | GCT | AGT | TAC | CAT | ACA | GCT | TCT | GTT | C-- | --- | --- | --- | -TA | CGT | AGT | ACC | GGC | CAG | AAA | TCA | ATT | GTT | GCC | TAT | ACT | ATG | TCA | CTG | GGT | GCT | GAA | AAT | TCC | ATT | GCA | TAC | GCT | AAT | AAT | TCA | ATT | GCC | ATA | CCT | ACA | AAT | TTT | TCA | ATC | AGT | GTC | ACT | ACA | GAA | GTG | ATG | CCT | GTT | TCA | ATG | GCT | AAA | ACA | GCC | GTG | GAT | TGT | ACT | ATG | TAC | ATC | TGC | GGT | GAT | TCT | TTA | GAG | TGC | AGC | AAC | TTA | CTA | TTG | CAG | TAT | GGA | AGC | TTT | TGC | ACA | CAA | CTC | AAT | CGT | GCC | CTC | ACT | GGC | ATT | GCT | ATA | GAA | CAG | GAC | AAA | AAC | ACT | CAG | GAG | GTC | TTT | GCC | CAG | GTT | AAA | CAA | ATG | TAC | AAG | ACA | CCT | GCC | ATA | AAG | GAC | TTT | GGC | GGT | TTC | AAT | TTT | TCA | CAA | ATA | TTG | CCT | GAC | CCT | TCA | AAG | CCA | ACG | AAG | AGA | TCA | TTT | ATT | GAA | GAC | TTG | CTC | TTC | AAT | AAA | GTG | ACT | CTC | GCT | GAT | GCT | GGC | TTT | ATG | AAA | CAA | TAT | GGT | GAC | TGC | CTA | GGT | GAT | GTT | AGT | GCT | AGA | GAC | CTT | ATC | TGT | GCC | CAG | AAG | TTC | AAT | GGA | CTT | ACT | GTG | CTA | CCG | CCA | CTG | CTC | ACA | GAT | GAG | ATG | GTT | GCT | GCA | TAC | ACA | GCT | GCG | CTA | GTT | AGT | GGT | ACT | GCT | ACG | GCG | GGC | TGG | ACG | TTT | GGT | GCA | GGT | GCA | GCT | CTT | CAA | ATA | CCA | TTT | GCT | ATG | CAA | ATG | GCT | TAT | AGG | TTT | AAT | GGC | ATT | GGA | GTT | ACT | CAA | AAT | GTT | CTC | TAT | GAG | AAC | CAA | AAG | CTG | ATA | GCC | AAT | CAG | TTT | AAT | AGT | GCT | ATA | GGC | AAA | ATT | CAA | GAA | TCA | TTA | TCA | TCT | ACT | GCA | AGT | GCA | CTA | GGA | AAA | CTG | CAG | GAT | GTG | GTT | AAC | CAA | AAT | GCA | CAA | GCT | CTT | AAC | ACG | CTT | GTT | AAA | CAA | CTC | AGC | TCT | AAT | TTT | GGA | GCT | ATC | TCA | AGT | GTG | TTA | AAT | GAT | ATT | CTC | TCT | CGC | CTT | GAT | AAA | GTT | GAG | GCA | GAA | GTT | CAA | ATT | GAC | AGG | TTG | ATT | ACA | GGC | AGA | TTG | CAA | AGC | CTT | CAA | ACC | TAC | GTA | ACA | CAA | CAA | CTT | ATC | AGA | GCT | GCT | GAA | ATC | AGA | GCT | TCT | GCT | AAT | CTT | GCT | GCT | ACT | AAA | ATG | TCT | GAG | TGC | GTT | CTT | GGA | CAA | TCA | AAA | AGA | GTT | GAT | TTC | TGT | GGA | AAA | GGC | TAC | CAC | CTT | ATG | TCC | TTC | CCT | CAA | TCA | GCA | CCT | CAC | GGT | GTC | GTT | TTT | CTA | CAT | GTC | ACA | TAT | GTG | CCA | TCA | CAA | GAG | AAA | AAC | TTC | ACA | ACA | GCT | CCA | GCT | ATT | TGT | CAC | GAA | GGC | AAA | GCT | TAT | TTC | CCT | CGT | GAA | GGT | GTC | TTT | GTG | TCT | AAT | GGC | ACT | TCT | TGG | TTT | ATT | ACG | CAG | AGG | AAT | TTT | TAC | TCT | CCA | CAA | TTA | ATT | ACA | ACA | GAT | AAT | ACT | TTT | GTT | TCT | GGT | AAT | TGT | GAT | GTC | GTG | ATC | GGC | ATC | ATT | AAT | AAT | ACT | GTT | TAT | GAT | CCT | CTG | CAG | CCT | GAA | CTT | GAC | TCG | TTT | AAG | GAA | GAG | CTG | GAC | AAG | TAC | TTC | AAA | AAT | CAT | ACA | TCA | CCA | GAT | GTT | GAT | CTT | GGC | GAC | ATT | TCA | GGC | ATT | AAT | GCT | TCA | GTC | GTC | AAC | ATT | CAA | AAG | GAG | ATT | GAC | CGA | CTC | AAT | GAG | GTT | GCC | AAA | AAC | CTA | AAT | GAA | TCA | CTC | ATT | GAC | CTC | CAA | GAA | CTT | GGG | AAA | TAT | GAG | CAA | TAC | ATC | AAG | TGG | CCT | TGG | TAT | GTT | TGG | CTC | GGC | TTT | ATT | GCT | GGA | CTA | ATT | GCC | ATC | GTC | ATG | GTT | ACA | ATC | TTG | CTT | TGT | TGC | ATG | ACC | AGC | TGT | TGC | AGT | TGT | CTC | AAG | GGT | GCA | TGC | TCT | TGT | GGT | TCG | TGC | TGC | AAA | TTT | GAT | GAG | GAC | GAC | TCT | GAG | CCA | GTG | CTC | AAA | GGA | GTC | AAA | TTA | CAT | TAC | ACA | TAA |
GQ153547_Bat_SARS_CoV_HKU3_12 | TTG | CTT | TCT | TAG | CTA | ATT | TAG | CTA | AAG | CAC | AGG | AAG | G---AT | GCG | GTA | TCA | TCA | GCA | GAA | AAC | C-- | GCA | ACC | TAA | AAT | GGC | --A | CAA | GTC | TCA | TCT | TCT | CGT | CGG | GGC | GTT | TAT | TAT | AAT | GAT | GAC | ATT | TTC | CGT | TCT | GAT | GTG | TTA | CAC | CTC | ACA | CAG | GAT | TAC | TTC | CTG | CCA | TTT | GAC | TCA | AAT | TTA | ACT | CAG | TAC | TTT | TCG | CTT | AAT | G-- | -TG | GAT | TCA | GAT | AGG | TAT | ACC | TAT | TTT | GAC | AAC | CCC | ATA | CTA | GAC | TTT | GGT | GAT | GGC | GTT | TAT | TTC | GCT | GCC | ACT | GAA | AAG | TCT | AAC | GTA | ATA | AGA | GGC | TGG | ATT | TTT | GGT | TCA | TCT | TTT | GAT | AAC | ACC | ACC | CAG | TCA | GCT | GTT | ATA | GTT | AAT | AAT | TCA | ACA | CAC | ATT | ATT | ATA | CGT | GTG | TGT | AAT | TTT | AAC | TTA | TGT | AAA | GAA | CCC | ATG | TAT | ACT | GTT | AGT | AGA | --- | --- | --- | --- | --- | --- | GGT | ACA | CAG | CAA | AAT | GCC | TGG | GTT | TAT | CAG | AGT | GCA | TTT | AAT | TGT | ACA | TAT | GAC | CGA | GTG | GAA | AAG | AGT | TTT | CAA | CT- | --T | GAC | ACT | ACTCCT | AAA | ACT | GGA | AAT | TTT | AAA | GAC | CTA | CGT | GAG | TAT | GTC | TTT | AAA | AAT | AGG | GAT | GGC | TTT | CTG | TCT | GTC | TAC | CAA | ACT | TAT | ACT | GCT | GTT | AAT | TTA | CCC | AGA | GG------------A | CTA | CCC | ACG | GGT | TTC | TCA | GTC | TTG | AAA | CCA | ATT | TTA | AAA | TTG | CCC | TTT | GGA | ATT | AAT | ATC | ACT | TCT | TAT | AGA | GTA | GTT | ATG | GCA | ATG | TTT | AGC | CAA | ACT | ACT | TC- | --- | --- | --- | --- | --- | --T | AAT | TTT | TTA | CCA | GAA | AGT | GCT | GCT | TAT | TAT | GTT | GGT | AAT | CTT | AAA | TAT | TCT | ACC | TTC | ATG | CTC | CGA | TTT | AAT | GAA | AAT | GGG | ACG | ATC | ACG | GAT | GCT | GTA | GAT | TGT | TCC | CAA | AAT | CCT | CTT | GCT | GAA | TTA | AAA | TGC | ACC | ATT | AAA | AAT | TTC | AAT | GTT | GAC | AAA | GGA | ATC | TAC | CAA | ACA | TCC | AAC | TTC | AGA | GTT | TCA | CCC | ACT | CAA | GAG | GTT | ATT | AGA | TTT | CCT | AAC | ATT | ACA | AAT | CGC | TGT | CCT | TTT | GAC | AAG | GTT | TTT | AAT | GCT | ACT | CGC | TTT | CCT | AAT | GTT | TAT | GCA | TGG | GAG | AGA | ACA | AAA | ATT | TCT | GAT | TGT | GTT | GCT | GAC | TAC | ACT | GTT | CTC | TAC | AAC | TCA--- | ACC | TCT | TTC | TCG | ACT | TTT | AAA | TGT | TAT | GGA | GTG | TCT | CCA | TCT | AAG | TTG | ATT | GAC | CTA | TGC | TTT | ACA | AGT | GTG | TAT | GCT | GAT | ACA | TTC | TTG | ATA | AGA | TCT | TCT | GAA | GTA | AGA | CAA | GTT | GCA | CCA | GGT | GAA | ACT | GGT | GTT | ATT | GCT | GAC | TAC | AAT | TAC | AAG | TTG | CCT | GAT | GAT | TTC | ACT | GGC | TGT | GTA | ATT | GCT | TGG | AAT | A-- | --- | --- | --- | --- | -CT | GCT | AAA | CAT | GAT | ACT | GGC | AAT | TAT | TAC | TAC | AGA | TCT | CAT | CGC | AAG | ACT | AAG | TTA | AAG | CCT | TTT | GAG | AGA | GAC | CTG | TCT | TCT | G-- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | -AC | GA- | --T | GGT | AAT | GGT | GTG | TAT | ACA | CTC | TCA | ACA | TAT | GAC | TTT | AAC | CCT | AAC | GTT | CCA | GTA | GCA | TAT | CAG | GCT | ACT | AGG | GTT | GTT | GTA | CTC | TCT | TTT | GAA | CTT | CTT | AAT | GCA | CCT | GCT | ACA | GTT | TGT | GGA | CCT | AAA | TTA | TCC | ACA | GAA | CTA | GTT | AAG | AAC | CAG | TGT | GTT | AAT | TTC | AAT | TTT | AAT | GGA | CTT | AAA | GGT | ACT | GGT | GTT | TTG | ACT | TCT | TCT | TCA | AAA | AGA | TTC | CAG | TCA | TTT | CAA | CAA | TTT | GGT | CGT | GAC | ACA | TCT | GAC | TTT | ACG | GAT | TCA | GTA | CGT | GAC | CCA | CAG | ACT | TTA | GAA | ATA | CTT | GAC | ATT | TCA | CCT | TGT | TCC | TTT | GGT | GGT | GTT | AGT | GTT | ATC | ACA | CCT | GGA | ACG | AAC | GCC | TCA | TCA | GAG | GTA | GCT | GTT | CTC | TAT | CAA | GAT | GTA | AAT | TGC | ACT | GAT | GTC | CCT | ACA | GCA | ATA | CGT | GCA | GAT | CAA | TTA | ACA | CCT | GCT | TGG | CGC | GTT | TAT | TCC | ACT | GGA | GTA | AAT | G------TG | TTT | CAA | ACA | CAA | GCT | GGC | TGT | CTT | ATA | GGA | GCT | GAG | CAT | GTC | AAC | GCC | TCT | TAT | GAG | TGT | GAC | ATT | CCT | ATT | GGT | GCA | GGC | ATT | TGT | GCT | AGT | TAC | CAT | ACA | GCT | TCT | GTT | C-- | --- | --- | --- | -TA | CGT | AGT | ACC | GGC | CAG | AAA | TCA | ATT | GTT | GCC | TAT | ACT | ATG | TCA | CTG | GGT | GCT | GAA | AAT | TCC | ATT | GCA | TAC | GCT | AAT | AAT | TCA | ATT | GCC | ATA | CCT | ACA | AAT | TTT | TCA | ATC | AGT | GTC | ACT | ACA | GAA | GTG | ATG | CCT | GTT | TCA | ATG | GCT | AAA | ACA | TCC | GTG | GAT | TGT | ACT | ATG | TAC | ATC | TGC | GGT | GAT | TCT | TTA | GAG | TGC | AGC | AAC | TTA | CTA | TTG | CAG | TAT | GGA | AGC | TTC | TGC | ACA | CAA | CTC | AAT | CGT | GCC | CTC | ACT | GGC | ATT | GCT | ATA | GAA | CAG | GAC | AAA | AAC | ACT | CAG | GAA | GTC | TTT | GCC | CAG | GTT | AAA | CAA | ATG | TAC | AAG | ACA | CCT | GCC | ATA | AAG | GAC | TTT | GGC | GGT | TTC | AAT | TTT | TCA | CAA | ATA | TTG | CCT | GAC | CCT | TCA | AAG | CCA | ACG | AAG | AGA | TCA | TTT | ATT | GAA | GAC | CTG | CTC | TTC | AAT | AAA | GTG | ACT | CTC | GCG | GAT | GCT | GGC | TTT | ATG | AAA | CAA | TAT | GGT | GAA | TGC | CTA | GGT | GAT | GTT | AGT | GCT | AGA | GAC | CTT | ATC | TGT | GCC | CAG | AAG | TTC | AAT | GGA | CTT | ACT | GTG | CTA | CCA | CCA | CTG | CTT | ACA | GAT | GAG | ATG | ATT | GCT | GCA | TAC | ACA | GCT | GCG | CTA | GTT | AGT | GGT | ACT | GCT | ACG | GCA | GGC | TGG | ACG | TTT | GGT | GCA | GGT | GCA | GCT | CTT | CAA | ATA | CCA | TTT | GCT | ATG | CAA | ATG | GCT | TAT | AGG | TTC | AAT | GGC | ATT | GGA | GTT | ACT | CAA | AAC | GTT | CTC | TAT | GAG | AAT | CAA | AAG | CTG | ATA | GCC | AAT | CAG | TTT | AAT | AGT | GCT | ATA | GGC | AAA | ATT | CAA | GAA | TCA | TTA | TCA | TCT | ACT | GCA | AGT | GCA | CTA | GGA | AAA | TTG | CAG | GAT | GTG | GTT | AAC | CAA | AAT | GCA | CAA | GCT | CTT | AAC | ACG | CTT | GTT | AAA | CAA | CTT | AGC | TCT | AAT | TTT | GGA | GCT | ATC | TCA | AGT | GTG | TTA | AAT | GAC | ATT | CTC | TCT | CGC | CTT | GAT | AAA | GTT | GAG | GCA | GAA | GTT | CAA | ATT | GAT | AGG | TTG | ATT | ACA | GGC | AGA | TTG | CAA | AGC | CTT | CAA | ACC | TAT | GTA | ACA | CAA | CAA | CTT | ATC | AGA | GCT | GCT | GAA | ATC | AGA | GCT | TCT | GCT | AAT | CTT | GCT | GCT | ACT | AAA | ATG | TCT | GAG | TGC | GTT | CTT | GGA | CAA | TCA | AAA | AGA | GTT | GAT | TTC | TGT | GGA | AAA | GGC | TAC | CAC | CTT | ATG | TCC | TTC | CCT | CAA | TCA | GCA | CCT | CAT | GGT | GTC | GTT | TTT | CTA | CAT | GTC | ACA | TAT | GTG | CCA | TCA | CAA | GAG | AAA | AAC | TTC | ACA | ACA | GCC | CCA | GCT | ATT | TGT | CAC | GAA | GGC | AAA | GCT | TAT | TTC | CCT | CGT | GAA | GGT | GTC | TTT | GTG | TCT | AAT | GGC | ACT | TCT | TGG | TTT | ATT | ACG | CAG | AGG | AAT | TTT | TAC | TCT | CCA | CAA | TTA | ATT | ACA | ACA | GAT | AAC | ACT | TTT | GTT | TCT | GGT | AAT | TGT | GAT | GTC | GTA | ATC | GGC | ATC | ATT | AAT | AAT | ACT | GTT | TAT | GAC | CCT | CTG | CAA | CCT | GAG | CTT | GAC | TCG | TTT | AAG | GAA | GAG | CTG | GAC | AAG | TAC | TTC | AAA | AAT | CAT | ACA | TCA | CCA | GAT | GTT | GAT | CTT | GGC | GAC | ATT | TCA | GGC | ATT | AAT | GCT | TCA | GTC | GTC | AAC | ATT | CAA | AAG | GAG | ATT | GAC | CGC | CTC | AAT | GAG | GTT | GCC | AAA | AAC | CTA | AAT | GAA | TCA | CTC | ATT | GAC | CTC | CAA | GAA | CTT | GGG | AAA | TAT | GAG | CAA | TAC | ATC | AAG | TGG | CCT | TGG | TAT | GTT | TGG | CTC | GGC | TTT | ATT | GCT | GGA | CTA | ATT | GCC | ATC | GTC | ATG | GTT | ACA | ATC | TTG | CTT | TGT | TGC | ATG | ACC | AGC | TGT | TGC | AGT | TGT | CTC | AAG | GGT | GCA | TGC | TCT | TGT | GGT | TCG | TGC | TGC | AAA | TTT | GAT | GAG | GAC | GAC | TCT | GAG | CCA | GTG | CTC | AAA | GGA | GTC | AAA | TTA | CAT | TAC | ACA | TAA |
KY352407_SARS_related_CoV_strain_BtKY72 | TAC | TCA | GTC | TCT | TGT | CAT | TCA | CCA | CTG | CCC | AAG | AAG | G---CT | GTG | GCA | TAT | TGA | GTA | ATA | AGA | G-- | CAA | TCC | AGC | TCT | TAC | --T | CAA | TAT | TTT | TCA | TCT | AGG | AGA | GGT | TTT | TAT | TAT | TTT | GAT | GAC | ACA | TTT | AGA | TCT | TCT | GTT | CGT | GTG | TTG | ACT | ACA | GGT | TAT | TTC | TTG | CCT | TTC | AAT | AGT | AAT | CTT | ACT | GGT | TAT | AGT | TCA | AGA | AAT | T-- | -CA | GTT | ACT | GGA | CGG | CTG | ATA | CAG | TTT | GAT | AAT | CCA | AAC | ATA | CCA | TTT | AAG | GAT | GGT | TTG | TAT | TTT | GCG | GCA | ACA | GAA | AGG | TCC | AAC | GTT | ATA | CGC | GGT | TGG | ATT | TTT | GGC | TCT | ACA | CTA | GAC | AAC | ACA | ACT | CAA | TCC | GCT | GTG | CTT | TTT | AAT | AAT | GGT | ACA | CAC | ATT | GTT | ATT | AAT | GTG | TGT | AAC | TTT | TAT | TTT | TGC | CAA | GAT | CCC | ATG | TTG | GCA | GTG | GCT | AAT | --- | --- | --- | --- | --- | --- | GGT | TCT | CAT | TTT | AAA | TCT | TGG | GTT | TTT | CTT | AAT | GCC | ACC | AAT | TGT | ACA | TAT | AAT | CGT | GTA | --- | CAT | GGT | TTT | GAG | ATT | GAC | CCT | AGT | C---CA | AAT | ACA | GGT | TCC | TTT | ATA | CAT | TTA | AGA | GAA | CAT | GTA | TTT | AGA | AAT | GTG | GAT | GGT | TTT | CTT | TAT | GTT | TAC | CAT | AAT | TAT | GAA | AGA | GTA | GAT | GTT | TAT | GAC | AA------------C | TTC | CCT | CAG | GGA | TTT | TCT | GTC | CTA | AAA | CCT | ATA | TTC | AAA | TTA | CCT | TTT | GGC | CTG | AAT | ATA | ACA | CAG | TTT | AAA | GTC | ATC | ATG | ACT | TTG | TTT | TCA | CCT | ACT | ACA | AG- | --- | --- | --- | --- | --- | --T | TCC | TTT | AAT | GCA | GAT | GCT | TCT | GTT | TAT | TTT | GTA | GGC | CAT | TTA | AAA | CCT | CTC | ACT | ATG | CTT | GCT | GAA | TTT | GAT | GAA | AAC | GGC | ACT | ATT | ACA | GAT | GCC | GTT | GAT | TGT | TCT | CAG | GAT | CCT | CTT | TCT | GAG | CTA | AAA | TGT | ACC | ACT | AAA | AGC | CTT | ACT | GTT | GAA | AAA | GGA | ATT | TAC | CAA | ACT | TCA | AAC | TTC | CGT | GTT | TCA | CCT | AGT | ACT | GAA | GTA | GTA | AGA | TTT | CCT | AAC | ATA | ACA | AAC | CTT | TGT | CCT | TTT | GGC | CAA | GTG | TTC | AAT | GCT | TCA | AAT | TTC | CCT | TCA | GTT | TAT | GCT | TGG | GAA | AGA | CTA | CGT | ATT | AGT | GAC | TGC | GTT | GCA | GAT | TAC | GCA | GTG | CTT | TAT | AAT | TCATCT | TCT | TCT | TTT | TCG | ACA | TTT | AAG | TGC | TAT | GGT | GTT | TCT | CCT | ACT | AAA | CTC | AAT | GAC | TTG | TGT | TTT | AGT | AGT | GTG | TAC | GCA | GAT | TAC | TTC | GTC | GTG | AAA | GGT | GAT | GAT | GTT | AGA | CAA | ATA | GCT | CCT | GCG | CAG | ACA | GGT | GTT | ATT | GCT | GAT | TAT | AAT | TAT | AAA | TTG | CCA | GAC | GAT | TTT | ACT | GGC | TGT | GTT | TTA | GCC | TGG | AAT | ACC | AAT | TCT | GTG | GAT | TCA | AAA | TCA | GGA | AAC | AAT | TTT | TAT | TA- | --- | --T | AGG | CTT | TTT | AGA | CAT | GGG | AAG | ATC | AAA | CCT | TAT | GAA | CGC | GAT | ATT | TCC | AAT | GTC | CTT | TAT | AAT | TCA | GCT | GGT | GGT | ACG | TGT | TCT | TCT | ATT | TCT | CAA | CTA | GGT | TGT | TAT | GAA | CCA | CTT | AAA | TCC | TAT | GGT | TTT | ACA | CCC | ACT | GTT | GGT | GTT | GGT | TAC | CAA | CCA | TAT | AGA | GTG | GTT | GTT | CTT | TCT | TTT | GAA | TTA | CTA | AAT | GCA | CCT | GCA | ACC | GTA | TGT | GGC | CCT | AAA | AAG | TCC | ACA | GAA | CTT | GTT | AAG | AAC | AAG | TGT | GTG | AAC | TTT | AAT | TTT | AAT | GGA | CTA | ACA | GGC | ACT | GGT | GTG | CTC | ACT | AGT | TCA | ACT | AAG | AAG | TTT | CAG | CCC | TTT | CAA | CAA | TTT | GGT | CGT | GAT | GTC | TCA | GAC | TTC | ACT | GAC | TCT | GTT | AGG | GAT | CCT | AAA | ACT | TTT | GAA | ATT | TTA | GAC | ATT | TCA | CCT | TGC | TCC | TAT | GGC | GGT | GTT | AGT | GTT | ATA | ACT | CCT | GGA | ACA | AAC | ACA | TCC | AAA | GCA | GTT | GCT | GTT | TTA | TAC | CAA | GAC | GTT | AAT | TGT | ACC | GAT | GTT | CCA | ACT | ATG | ATA | CAT | GTG | GAA | CAG | GTG | TCT | TCA | GAC | TGG | CGC | GTA | TAC | GCT | TTT | AAT | TCA | TAT | GGTAACATG | TTC | CAA | ACA | CAA | GCT | GGT | TGT | CTT | GTA | GGA | GCC | ATT | TAT | GAG | AAC | ACC | ACC | TAT | GAG | TGT | GAT | ATA | CCT | ATC | GGA | GCT | GGA | ATC | TGT | GCT | AAG | TTC | GGC | TCA | GAT | AAA | ATT | A-- | --- | --- | --- | --- | --- | -GA | ATG | GGA | CAG | GAA | TCT | ATA | GTA | GCT | TAC | ACC | ATG | TCA | ATT | GGT | GAA | GAT | CAA | TCT | ATT | GCT | TAT | TCT | AAT | AAT | ATT | ATA | GCT | ATA | CCA | ACT | AAT | TTT | AGT | ATT | AGT | GTG | ACC | ACC | GAA | GTT | TTA | CCT | GTC | TCT | ATG | ACT | AAG | ACT | TCT | GTT | GAT | TGC | AAC | ATG | TAT | ATT | TGT | GGT | GAT | TCT | ACA | GAG | TGT | AGC | AAT | TTA | TTG | CTA | CAG | TAT | GGT | AGT | TTC | TGT | ACA | CAA | CTT | AAT | AGA | GCA | CTT | TCT | GGT | ATT | GCT | GTC | GAA | CAA | GAC | AGA | AAC | ACT | AGA | GAT | GTG | TTT | GCA | CAG | ACT | AAA | TCC | ATC | TAT | AAA | ACT | CCT | AAT | ATT | AAG | GAC | TTT | GGT | GGA | TTT | AAT | TTT | TCT | CAA | ATT | CTG | CCA | GAC | CCT | AAA | AAA | CTT | TCC | TAC | AGG | TCT | TTC | ATT | GAG | GAC | CTT | CTT | TAT | AAC | AAG | GTC | ACA | TTA | TCT | GAT | CCT | GGT | TTT | ATG | AAG | CAG | TAT | GGC | GAC | TGT | TTA | GGT | GGT | ATA | AAT | GCT | AGA | GAC | CTT | ATT | TGT | GCT | CAA | AAG | TTC | AAT | GGT | CTC | ACC | GTT | TTG | CCA | CCT | TTA | CTT | ACA | GAC | GAC | ATG | ATT | GCT | GCT | TAC | ACA | GCC | GCA | CTC | ATT | AGT | GGT | ACA | GCT | ACG | GCT | GGT | TAC | ACT | TTC | GGC | GCT | GGT | GCA | GCA | CTT | CAA | ATT | CCA | TTT | GCT | ATG | CAA | ATG | GCA | TAT | AGA | TTT | AAT | GGC | ATA | GGT | GTA | ACT | CAA | AAC | GTG | CTT | TAT | GAG | AAC | CAG | AAA | CAA | ATT | GCC | AAT | CAG | TTT | AAT | AAT | GCT | ATA | TCC | AAA | ATT | CAG | GAT | TCG | CTT | ACT | ACT | ACA | AGT | GCA | GCA | TTG | GGT | AAA | TTA | CAA | GAT | GTG | ATA | AAT | CAG | AAT | GCT | GTA | GCT | TTA | AAT | ACT | CTT | GTA | AAG | CAA | CTT | AGC | TCC | AAT | TTT | GGC | GCT | ATT | TCA | AGT | GTG | TTA | AAT | GAC | ATT | CTT | TCT | AGA | CTT | GAT | AAA | GTT | GAG | GCT | GAA | GTC | CAG | ATA | GAT | CGG | CTT | ATT | ACT | GGT | AGA | CTT | CAG | AGC | TTA | CAG | ACT | TAT | GTT | ACA | CAG | CAA | CTT | ATC | AGA | GCT | GCT | GAG | ATC | AGA | GCT | TCT | GCT | AAT | CTT | GCT | GCT | ACT | AAA | ATG | TCA | GAG | TGT | GTA | CTT | GGG | CAG | TCT | AAA | AGA | GTT | GAC | TTT | TGT | GGA | AAA | GGT | TAC | CAC | TTA | ATG | TCT | TTC | CCA | CAA | GCC | GCA | CCA | CAT | GGT | GTT | GTT | TTC | TTG | CAT | GTC | ACT | TAT | GTG | CCT | TCG | CAA | CAG | CAA | AAC | TTC | ACC | ACA | GCA | CCA | GCC | ATT | TGT | CAC | AAT | GGT | AAA | GCA | TAC | TTC | CCT | AGA | GAA | GGT | GTT | TTT | GTT | ATG | AAT | GGC | ACA | CAC | TGG | TTC | ATT | ACA | CAA | AGA | AAT | TTT | TAC | TCA | CCA | CAG | GTT | ATC | ACT | ACA | GAT | AAC | ACT | TTT | GAA | TCA | GGT | AGT | TGT | GAT | GTC | GTC | ATA | GGC | ATC | ATT | AAT | AAT | ACA | GTT | TAT | GAC | CCG | CTC | CAA | CCA | GAG | CTC | GAG | TCT | TTT | AAG | CAG | GAA | CTT | GAT | AAA | TAT | TTT | AAA | AAT | CAT | ACG | TCA | CCT | GAT | GTA | GAT | TTT | GGA | GAC | ATC | TCA | GGC | ATT | AAT | GCC | TCT | GTT | GTC | GAT | ATT | AAA | AAG | GAA | ATT | GCT | CAT | CTA | AAT | GAA | ATT | GCT | AAA | AAT | TTA | AAT | GAG | TCT | CTT | ATA | GAC | CTA | CAG | GAA | TTA | GGT | AAA | TAT | GAA | CAG | TAC | GTT | AAA | TGG | CCT | TGG | TAC | GTT | TGG | CTT | GGC | TTT | GTA | GCC | GGC | ATC | GTT | GCC | ATT | CTT | ATG | TCT | GTT | ATT | ATG | CTT | TGC | TGC | ATG | ACC | AAT | TGT | TGC | AGT | TGC | TTC | AAG | GGC | ATG | TGT | TCT | TGT | GGT | TCC | TGT | TGT | AAA | TTT | GAT | GAA | GAC | CAT | TCA | GAG | CCT | G-- | -TA | AGT | GGT | GTC | AAA | TTA | CAT | TAT | ACC | TAA |
NC_014470_Bat_CoV_BM48_31_BGR_2008 | TTC | TCT | GTC | TTC | TTG | GCT | TTG | CTA | ACG | CTC | AAG | ATG | GCAAGT | GTG | GTA | CAC | TAT | CTA | ATA | AAA | G-- | TCC | ATC | TAA | GCT | TAC | --T | CAG | ACT | CCT | TCT | TCT | AGG | AGG | GGT | TTT | TAT | TAT | TTT | GAT | GAC | ATT | TTT | AGG | TCT | TCA | ATT | CGT | GTG | CTT | ACC | ACT | GGC | CAT | TTT | CTT | CCT | TTT | AAT | ACT | AAC | CTT | ACT | TGG | TAT | TTG | ACT | TTA | AAG | T-- | -CT | AAT | GGT | AAG | CAG | AGG | ATT | TAT | TAT | GAT | AAT | CCC | AAC | ATT | AAC | TTT | GGT | GAT | GGT | GTT | TAT | TTT | GGT | CTA | ACC | GAG | AAA | TCT | AAT | GTT | TTT | CGA | GGT | TGG | ATT | TTT | GGT | TCG | ACA | TTA | GAC | AAC | ACA | ACT | CAG | TCT | GCT | GTT | CTC | TTT | AAT | AAT | GGT | ACA | CAC | ATT | GTT | ATA | GAT | GTG | TGT | AAC | TTT | AAT | TTT | TGT | GCT | GAT | CCA | ATG | TTT | GCT | GTC | AAT | AGT | --- | --- | --- | --- | --- | --- | GGA | CAG | CCT | TAT | AAA | ACC | TGG | ATT | TAT | ACT | AGT | GCG | GCT | AAT | TGC | ACT | TAC | CAC | AGA | GCA | --- | CAT | GCA | TTT | AAT | ATT | AGC | ACT | AAT | A---TG | AAT | CCA | GGT | AAG | TTT | AAA | CAT | TTT | AGG | GAG | CAC | CTG | TTT | AAG | AAT | GTA | GAC | GGC | TTC | CTA | TAT | GTC | TAT | CAT | AAC | TAT | GAA | CCC | ATT | GAT | CTT | AAC | AGT | GG------------T | TTT | CCT | TCT | GGC | TTT | TCT | GTT | TTA | AAA | CCA | ATA | CTT | AAG | CTG | CCT | TTT | GGT | CTC | AAC | ATT | ACA | TAT | GTT | AAG | GCC | ATA | ATG | ACA | TTG | TTT | TCT | TCC | ACT | CAA | AG- | --- | --- | --- | --- | --- | --T | AAT | TTT | GAT | GCT | GAC | GCT | TCT | GCT | TAC | TTT | GTG | GGC | CAT | CTA | AAA | CCT | CTC | ACC | ATG | CTT | GTT | GAC | TTT | GAC | GAG | AAT | GGC | ACC | ATT | ATT | GAT | GCT | ATA | GAT | TGC | TCT | CAA | GAT | CCA | CTC | TCA | GAG | CTT | AAG | TGT | ACC | ACT | AAG | AGT | TTT | ACA | GTT | GAA | AAA | GGA | ATT | TAT | CAA | ACC | TCT | AAC | TTC | CGT | GTT | ACA | CCA | ACC | ACT | GAA | GTT | GTT | AGG | TTT | CCT | AAC | ATT | ACA | CAG | CTT | TGT | CCT | TTT | AAC | GAA | GTT | TTC | AAT | ATA | ACC | TCT | TTC | CCA | TCC | GTT | TAC | GCG | TGG | GAG | AGA | ATG | CGC | ATT | ACT | AAT | TGT | GTT | GCG | GAC | TAC | TCA | GTG | CTT | TAC | AAT | TCTTCT | GCC | TCC | TTC | TCA | ACA | TTT | CAG | TGT | TAT | GGC | GTT | TCA | CCT | ACA | AAG | CTC | AAC | GAT | TTA | TGC | TTT | AGC | AGT | GTT | TAC | GCA | GAC | TAC | TTT | GTT | GTG | AAG | GGT | GAT | GAT | GTA | CGC | CAA | ATT | GCA | CCT | GCT | CAG | ACA | GGT | GTG | ATT | GCT | GAT | TAC | AAT | TAC | AAA | TTG | CCT | GAT | GAT | TTT | ACA | GGT | TGT | GTA | ATA | GCC | TGG | AAT | ACA | AAT | TCT | TTG | GAC | AGT | TCC | AAC | G-- | --- | --- | --- | -AA | TTC | TTT | TAC | AGG | AGA | TTC | AGA | CAT | GGA | AAG | ATT | AAA | CCT | TAT | GGG | CGT | GAC | CTT | TCC | AAT | GTT | CTT | TTT | AAC | CCT | TCA | GGT | GGT | ACA | TGT | TCA | GCT | GAA | GG- | --T | CTT | AAT | TGT | TAC | AAA | CCA | CTT | GCC | TCC | TAT | GGA | TTT | ACA | CAG | TCC | TCT | GGA | ATT | GGC | TTT | CAA | CCA | TAC | AGA | GTG | GTT | GTG | CTT | TCT | TTT | GAG | TTG | TTA | AAC | GCA | CCT | GCT | ACA | GTT | TGT | GGG | CCT | AAA | CAG | TCT | ACT | GAG | CTA | GTT | AAG | AAC | AAG | TGT | GTT | AAC | TTC | AAT | TTC | AAC | GGA | CTT | ACA | GGC | ACT | GGT | GTG | CTT | ACT | AAT | TCT | ACT | AAA | AAG | TTC | CAA | CCT | TTT | CAA | CAG | TTT | GGG | CGT | GAC | GTT | TCA | GAT | TTT | ACG | GAC | TCC | GTC | AGA | GAC | CCT | AAA | ACC | CTT | GAG | ATT | CTT | GAC | ATT | GCA | CCT | TGT | TCA | TAC | GGC | GGT | GTC | AGT | GTT | ATA | ACT | CCT | GGT | ACA | AAT | GCT | TCT | AGT | TCA | GTG | GCT | GTT | TTG | TAT | CAG | GAT | GTT | AAT | TGT | ACA | GAT | GTG | CCT | ACT | ATG | TTA | CAT | GCT | GAT | CAA | ATT | TCT | CAT | GAT | TGG | CGT | GTG | TAT | GCC | TTC | CGT | AAT | GAT | GGCAACATA | TTC | CAA | ACA | CAG | GCT | GGT | TGT | TTG | ATT | GGT | GCT | GCT | TAT | GAC | AAC | TCA | TCT | TAT | GAG | TGT | GAT | ATT | CCT | ATA | GGA | GCT | GGC | ATT | TGT | GCT | AAG | TAT | ACG | AAT | GTT | TCT | AGC | ACA | CTT | GTG | C-- | --- | --- | -GC | TCC | GGT | GGA | CAC | TCC | ATA | CTA | GCT | TAC | ACC | ATG | TCT | CTT | GGT | GAC | AAT | CAA | GAC | ATT | GTT | TAT | TCT | AAC | AAC | ACC | ATT | GCT | ATT | CCA | ATG | AAT | TTT | AGT | ATT | AGT | GTC | ACT | ACT | GAG | GTC | TTG | CCT | GTT | TCA | ATG | ACT | AAG | ACT | TCA | GTA | GAT | TGT | AAC | ATG | TAT | ATT | TGC | GGT | GAC | TCC | ACT | GAA | TGC | AGT | AAT | TTG | CTG | CTA | CAG | TAT | GGT | AGT | TTC | TGC | ACG | CAG | TTA | AAC | AGA | GCT | CTT | GCC | GGT | ATA | GCT | GTG | GAA | CAA | GAC | AGA | AAT | ACT | CGA | GAT | GTC | TTT | GCA | CAA | ACT | AAG | GCC | ATG | TAC | AAG | ACT | CCT | TCT | TTG | AAG | GAT | TTT | GGT | GGT | TTT | AAT | TTT | TCA | CAG | ATT | TTG | CCA | GAC | CCC | GCT | AAA | CCG | TCT | AGT | AGA | TCT | TTT | ATT | GAG | GAC | TTG | CTT | TAC | AAC | AAA | GTC | ACA | CTT | GCT | GAC | CCA | GGT | TTT | ATG | AAG | CAG | TAT | GGT | GAT | TGT | TTA | GGT | GGT | GTT | AAT | GCT | CGT | GAC | CTC | ATT | TGT | GCA | CAA | AAG | TTC | AAT | GGG | CTC | ACA | GTA | CTC | CCA | CCC | CTA | CTC | ACT | GAT | GAA | ATG | ATT | GCG | GCA | TAC | ACG | GCA | GCA | CTA | ATA | AGT | GGA | ACG | GCT | ACG | GCA | GGT | TTT | ACT | TTT | GGT | GCA | GGT | GCT | GCG | CTT | CAG | ATA | CCT | TTT | GCG | ATG | CAA | ATG | GCT | TAC | AGA | TTT | AAT | GGC | ATT | GGT | GTC | ACT | CAA | AAT | GTT | TTG | TAT | GAG | AAC | CAG | AAA | CAA | ATT | GCT | AAT | CAG | TTC | AAT | AAG | GCT | ATC | TCA | CAA | ATT | CAG | GAT | TCC | TTA | AGT | ACT | ACT | ACT | ACA | GCA | CTT | GGC | AAA | TTA | CAG | GAT | GTG | ATT | AAC | CAA | AAT | GCC | ATA | GCC | CTT | AAC | ACA | CTA | GTT | AAA | CAG | CTT | AGC | TCC | AAT | TTT | GGT | GCT | ATT | TCT | AGT | GTA | CTG | AAT | GAT | ATT | CTG | TCT | CGA | CTT | GAC | AAA | GTA | GAG | GCC | GAA | GTT | CAA | ATT | GAC | AGG | CTT | ATA | ACA | GGA | CGT | TTA | CAG | AGC | TTG | CAG | ACT | TAT | GTT | ACA | CAG | CAA | CTT | ATC | AGA | GCC | GCA | GAA | ATT | AGA | GCC | TCT | GCT | AAT | CTT | GCT | GCT | ACA | AAA | ATG | TCC | GAG | TGT | GTA | CTT | GGC | CAG | TCT | AAG | AGA | GTA | GAC | TTT | TGT | GGA | AAA | GGA | TAT | CAT | TTG | ATG | TCC | TTC | CCT | CAG | GCT | GCT | CCT | CAT | GGT | GTA | GTT | TTC | TTA | CAT | GTT | ACT | TAT | GTA | CCA | TCG | CAG | GAA | CAA | AAC | TTC | ACT | ACT | GCA | CCT | GCT | ATT | TGT | CAT | GAA | GGT | AAA | GCA | CAC | TTT | CCT | CGT | GAA | GGC | GTC | TTC | GTC | ACA | AAT | GGC | ACA | CAC | TGG | TTT | ATC | ACT | CAG | CGA | AAT | TTT | TAT | TCG | CCT | CAG | CCT | ATT | ACT | ACA | GAC | AAT | ACA | TTT | GTG | TCA | GGC | AAT | TGT | GAT | GTT | GTC | ATT | GGC | ATT | GTT | AAT | AAC | ACT | GTC | TAC | GAC | CCA | CTA | CAG | CCT | GAA | CTA | GAC | TCA | TTT | AAA | GAA | GAA | CTT | GAC | AAG | TAT | TTT | AAA | AAC | CAT | ACT | TCA | CAG | AAT | GTT | AGT | CTT | GAT | GGT | CTT | AAC | AAC | ATA | AAT | GCT | TCA | GTT | GTG | GAC | ATT | AAA | AAG | GAA | ATT | GAA | CAT | CTC | AAT | GAG | ATT | GCC | AAA | AGC | CTA | AAT | GAA | TCA | CTC | ATC | GAC | CTA | CAA | GAA | CTA | GGC | AAG | TAT | GAG | CAG | TAC | ATT | AAA | TGG | CCG | TGG | TAT | GTG | TGG | CTT | GGC | TTT | ATT | GCC | GGT | CTC | ATT | GCC | ATC | GTC | ATG | GCT | ACA | ATT | ATG | TTG | TGT | TGC | ATG | ACC | AGC | TGT | TGT | AGT | TGT | CTT | AAA | GGT | GTT | TGC | TCA | TGT | GCT | TCA | TGT | TGC | AAA | TTC | GAT | GAA | GAC | CAC | TCC | GAA | CCA | GTG | CTT | ACT | GGA | GTG | AAG | TTA | CAT | TAC | ACA | TAA |
surface_glycoprotein