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CodAlignView
Region
Intervals
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Trim Interval
Trim Transcript Interval
Prologue
Epilogue
Max Codons
Species
Alignment Set
dm3
dm3_15
dm3_20
dm6
dm6_27
hg19
hg19_46
hg19_46_primate
hg19_46_rodent
hg19_46_placental
hg19_100
hg19_100_primate
hg19_100_rodent
hg19_100_placental
hg19_100_mammal
hg19_100_tetrapod
hg38
hg38_58
hg38_100
hg38_100_24mammals
hg38_100_primate
hg38_100_rodent
hg38_100_mammal
hg38_100_tetrapod
hg38_7
hg38_20
ce6
mm9
mm9_30
mm10
mm10_60_29mammals
mm10_60
rn4
rn4_9
danRer7
sacCer2
sacCer3
hg18
hg18_44
AgamP3
AgamP3_19
AgamP3_9
AalbS1
AaraD1
AatrE1
AchrA1
AculA1
AdarC2
AdirW1
AepiE1
AfarF1
AfunF1
AgamM1
AgamS1
AmacM1
AmelC1
AmerM1
AminM1
AquaS1
AsinS1
AsteI2
AsteS1
ebov
ebov_124
Other
Ancestor
None
Infer
Plurality
InferWithIndels
PluralityWithIndels
Species
Aligned
All
Only
Exclude
Species Limit
Frame
Codon Position
0
1
2
Justify Frame
none
start
end
best
exonBest
Species Codon Position
Display
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Splice Site Predictions
human
fly
mosquito
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Info
User's Guide
Alignment Sets
Splice Models
Legend
Misc.
Fasta Out
No Palette
➡Antisense
Legend
GAC
No Change
GAT
Synonymous
GAA
Conservative
GGG
Radical
TAA
Ochre Stop Codon
TAG
Amber Stop Codon
TGA
Opal Stop Codon
ATG
In-frame ATG
GA-
Indel
GAC
Frame-shifted
<6
Splice Prediction
[]
Exon Break
...
No alignment