track PhyloCSFNovelmmus39.v35
type bigBed 12 +
itemRgb on
bigDataUrl http://data.broadinstitute.org/compbio1/PhyloCSFtracks/mm39/latest/PhyloCSFNovel.mmus39.v35.bb
shortLabel PhyloCSF Novel M35
longLabel PhyloCSF Candidate Coding Regions (PCCRs)  Not In GENCODE vM35 Gene Set
visibility pack
priority 19
group PhyloCSF

track PhyloCSFNovelmmus39.v34
type bigBed 12 +
itemRgb on
bigDataUrl http://data.broadinstitute.org/compbio1/PhyloCSFtracks/mm39/latest/PhyloCSFNovel.mmus39.v34.bb
shortLabel PhyloCSF Novel M34
longLabel PhyloCSF Candidate Coding Regions (PCCRs)  Not In GENCODE vM34 Gene Set
visibility hide
priority 19
group PhyloCSF

track PhyloCSFNovelmmus39.v33
type bigBed 12 +
itemRgb on
bigDataUrl http://data.broadinstitute.org/compbio1/PhyloCSFtracks/mm39/latest/PhyloCSFNovel.mmus39.v33.bb
shortLabel PhyloCSF Novel M33
longLabel PhyloCSF Candidate Coding Regions (PCCRs)  Not In GENCODE vM33 Gene Set
visibility hide
priority 19
group PhyloCSF

track PhyloCSFNovelmmus39.v32
type bigBed 12 +
itemRgb on
bigDataUrl http://data.broadinstitute.org/compbio1/PhyloCSFtracks/mm39/latest/PhyloCSFNovel.mmus39.v32.bb
shortLabel PhyloCSF Novel M32
longLabel PhyloCSF Candidate Coding Regions (PCCRs)  Not In GENCODE vM32 Gene Set
visibility hide
priority 19
group PhyloCSF

track PhyloCSFNovelmmus39.v31
type bigBed 12 +
itemRgb on
bigDataUrl http://data.broadinstitute.org/compbio1/PhyloCSFtracks/mm39/latest/PhyloCSFNovel.mmus39.v31.bb
shortLabel PhyloCSF Novel M31
longLabel PhyloCSF Candidate Coding Regions (PCCRs)  Not In GENCODE vM31 Gene Set
visibility hide
priority 19
group PhyloCSF

track PhyloCSFNovelmmus39.v30
type bigBed 12 +
itemRgb on
bigDataUrl http://data.broadinstitute.org/compbio1/PhyloCSFtracks/mm39/latest/PhyloCSFNovel.mmus39.v30.bb
shortLabel PhyloCSF Novel M30
longLabel PhyloCSF Candidate Coding Regions (PCCRs)  Not In GENCODE vM30 Gene Set
visibility hide
priority 19
group PhyloCSF

track PhyloCSFNovelmmus39.v29
type bigBed 12 +
itemRgb on
bigDataUrl http://data.broadinstitute.org/compbio1/PhyloCSFtracks/mm39/latest/PhyloCSFNovel.mmus39.v29.bb
shortLabel PhyloCSF Novel M29
longLabel PhyloCSF Candidate Coding Regions (PCCRs)  Not In GENCODE vM29 Gene Set
visibility hide
priority 19
group PhyloCSF

track PhyloCSFNovelmmus39.v28
type bigBed 12 +
itemRgb on
bigDataUrl http://data.broadinstitute.org/compbio1/PhyloCSFtracks/mm39/latest/PhyloCSFNovel.mmus39.v28.bb
shortLabel PhyloCSF Novel M28
longLabel PhyloCSF Candidate Coding Regions (PCCRs)  Not In GENCODE vM28 Gene Set
visibility hide
priority 19
group PhyloCSF

track PhyloCSFNovelmmus39.v27
type bigBed 12 +
itemRgb on
bigDataUrl http://data.broadinstitute.org/compbio1/PhyloCSFtracks/mm39/latest/PhyloCSFNovel.mmus39.v27.bb
shortLabel PhyloCSF Novel M27
longLabel PhyloCSF Candidate Coding Regions (PCCRs)  Not In GENCODE vM27 Gene Set
visibility hide
priority 19
group PhyloCSF

track PhyloCSFNovelmmus39.v26
type bigBed 12 +
itemRgb on
bigDataUrl http://data.broadinstitute.org/compbio1/PhyloCSFtracks/mm39/latest/PhyloCSFNovel.mmus39.v26.bb
shortLabel PhyloCSF Novel vM26
longLabel PhyloCSF Candidate Coding Regions (PCCRs)  Not In GENCODE vM26 Gene Set
visibility hide
priority 19
group PhyloCSF

track PhyloCSF_smooth
superTrack on show
shortLabel Smoothed PhyloCSF
longLabel Smoothed PhyloCSF
type bigWig
autoscale off
viewLimits -15:15
maxHeightPixels 60:30:12
graphTypeDefault bar
yLineMark 0
yLineOnOff on
priority 20

    track PhyloCSF_plus_1
    parent PhyloCSF_smooth
    bigDataUrl http://data.broadinstitute.org/compbio1/PhyloCSFtracks/mm39/latest/PhyloCSF+1.bw
    shortLabel PhyloCSF+1
    longLabel Smoothed PhyloCSF  Strand +  Frame 1
    color 0,175,0
    visibility full
    graphTypeDefault bar
    priority 20

    track PhyloCSF_plus_2
    parent PhyloCSF_smooth
    bigDataUrl http://data.broadinstitute.org/compbio1/PhyloCSFtracks/mm39/latest/PhyloCSF+2.bw
    shortLabel PhyloCSF+2
    longLabel Smoothed PhyloCSF  Strand +  Frame 2
    color 0,175,0
    visibility full
    graphTypeDefault bar
    priority 20

    track PhyloCSF_plus_3
    parent PhyloCSF_smooth
    bigDataUrl http://data.broadinstitute.org/compbio1/PhyloCSFtracks/mm39/latest/PhyloCSF+3.bw
    shortLabel PhyloCSF+3
    longLabel Smoothed PhyloCSF  Strand +  Frame 3
    color 0,175,0
    visibility full
    graphTypeDefault bar
    priority 20

    track PhyloCSF_minus_1
    parent PhyloCSF_smooth
    bigDataUrl http://data.broadinstitute.org/compbio1/PhyloCSFtracks/mm39/latest/PhyloCSF-1.bw
    shortLabel PhyloCSF-1
    longLabel Smoothed PhyloCSF  Strand -  Frame 1
    color 200,0,0
    visibility full
    graphTypeDefault bar
    priority 20

    track PhyloCSF_minus_2
    parent PhyloCSF_smooth
    bigDataUrl http://data.broadinstitute.org/compbio1/PhyloCSFtracks/mm39/latest/PhyloCSF-2.bw
    shortLabel PhyloCSF-2
    longLabel Smoothed PhyloCSF  Strand -  Frame 2
    color 200,0,0
    visibility full
    graphTypeDefault bar
    priority 20

    track PhyloCSF_minus_3
    parent PhyloCSF_smooth
    bigDataUrl http://data.broadinstitute.org/compbio1/PhyloCSFtracks/mm39/latest/PhyloCSF-3.bw
    shortLabel PhyloCSF-3
    longLabel Smoothed PhyloCSF  Strand -  Frame 3
    color 200,0,0
    visibility full
    graphTypeDefault bar
    priority 20


track PhyloCSF_Regions
superTrack on hide
shortLabel PhyloCSF Regions
longLabel PhyloCSF approximate coding regions
type bigBed 9 +
itemRgb on
visibility dense
priority 21

    track PhyloCSF_plus_1_regions
    parent PhyloCSF_Regions
    shortLabel PhyloCSF+1Regns
    longLabel PhyloCSF approximate coding regions, Strand +, Frame 1
    bigDataUrl http://data.broadinstitute.org/compbio1/PhyloCSFtracks/mm39/latest/PhyloCSF+1Regions.bb
    itemRgb on
    visibility dense
    priority 21

    track PhyloCSF_plus_2_regions
    parent PhyloCSF_Regions
    shortLabel PhyloCSF+2Regns
    longLabel PhyloCSF approximate coding regions, Strand +, Frame 2
    bigDataUrl http://data.broadinstitute.org/compbio1/PhyloCSFtracks/mm39/latest/PhyloCSF+2Regions.bb
    itemRgb on
    visibility dense
    priority 21

    track PhyloCSF_plus_3_regions
    parent PhyloCSF_Regions
    shortLabel PhyloCSF+3Regns
    longLabel PhyloCSF approximate coding regions, Strand +, Frame 3
    bigDataUrl http://data.broadinstitute.org/compbio1/PhyloCSFtracks/mm39/latest/PhyloCSF+3Regions.bb
    itemRgb on
    visibility dense
    priority 21

    track PhyloCSF_minus_1_regions
    parent PhyloCSF_Regions
    shortLabel PhyloCSF-1Regns
    longLabel PhyloCSF approximate coding regions, Strand -, Frame 1
    bigDataUrl http://data.broadinstitute.org/compbio1/PhyloCSFtracks/mm39/latest/PhyloCSF-1Regions.bb
    itemRgb on
    visibility dense
    priority 21

    track PhyloCSF_minus_2_regions
    parent PhyloCSF_Regions
    shortLabel PhyloCSF-2Regns
    longLabel PhyloCSF approximate coding regions, Strand -, Frame 2
    bigDataUrl http://data.broadinstitute.org/compbio1/PhyloCSFtracks/mm39/latest/PhyloCSF-2Regions.bb
    itemRgb on
    visibility dense
    priority 21

    track PhyloCSF_minus_3_regions
    parent PhyloCSF_Regions
    shortLabel PhyloCSF-3Regns
    longLabel PhyloCSF approximate coding regions, Strand -, Frame 3
    bigDataUrl http://data.broadinstitute.org/compbio1/PhyloCSFtracks/mm39/latest/PhyloCSF-3Regions.bb
    itemRgb on
    visibility dense
    priority 21


track PhyloCSF_raw
superTrack on hide
shortLabel Raw PhyloCSF
longLabel Raw PhyloCSF
type bigWig
autoscale off
viewLimits -15:15
maxHeightPixels 60:30:12
graphTypeDefault bar
yLineMark 0
yLineOnOff on
priority 22

    track PhyloCSFraw_plus_1
    parent PhyloCSF_raw
    bigDataUrl http://data.broadinstitute.org/compbio1/PhyloCSFtracks/mm39/latest/PhyloCSFRaw+1.bw
    shortLabel PhyloCSFraw+1
    longLabel Raw PhyloCSF  Strand +  Frame 1
    color 0,175,0
    visibility full
    graphTypeDefault bar
    priority 22

    track PhyloCSFraw_plus_2
    parent PhyloCSF_raw
    bigDataUrl http://data.broadinstitute.org/compbio1/PhyloCSFtracks/mm39/latest/PhyloCSFRaw+2.bw
    shortLabel PhyloCSFraw+2
    longLabel Raw PhyloCSF  Strand +  Frame 2
    color 0,175,0
    visibility full
    graphTypeDefault bar
    priority 22

    track PhyloCSFraw_plus_3
    parent PhyloCSF_raw
    bigDataUrl http://data.broadinstitute.org/compbio1/PhyloCSFtracks/mm39/latest/PhyloCSFRaw+3.bw
    shortLabel PhyloCSFraw+3
    longLabel Raw PhyloCSF  Strand +  Frame 3
    color 0,175,0
    visibility full
    graphTypeDefault bar
    priority 22

    track PhyloCSFraw_minus_1
    parent PhyloCSF_raw
    bigDataUrl http://data.broadinstitute.org/compbio1/PhyloCSFtracks/mm39/latest/PhyloCSFRaw-1.bw
    shortLabel PhyloCSFraw-1
    longLabel Raw PhyloCSF  Strand -  Frame 1
    color 200,0,0
    visibility full
    graphTypeDefault bar
    priority 22

    track PhyloCSFraw_minus_2
    parent PhyloCSF_raw
    bigDataUrl http://data.broadinstitute.org/compbio1/PhyloCSFtracks/mm39/latest/PhyloCSFRaw-2.bw
    shortLabel PhyloCSFraw-2
    longLabel Raw PhyloCSF  Strand -  Frame 2
    color 200,0,0
    visibility full
    graphTypeDefault bar
    priority 22

    track PhyloCSFraw_minus_3
    parent PhyloCSF_raw
    bigDataUrl http://data.broadinstitute.org/compbio1/PhyloCSFtracks/mm39/latest/PhyloCSFRaw-3.bw
    shortLabel PhyloCSFraw-3
    longLabel Raw PhyloCSF  Strand -  Frame 3
    color 200,0,0
    visibility full
    graphTypeDefault bar
    priority 22

track PhyloCSFpower
bigDataUrl http://data.broadinstitute.org/compbio1/PhyloCSFtracks/mm39/latest/PhyloCSFpower.bw
shortLabel PhyloCSF Power
longLabel Relative branch length of local alignment, a measure of PhyloCSF statistical power
type bigWig
autoscale off
viewLimits 0:1
maxHeightPixels 60:30:12
graphTypeDefault bar
yLineMark 0.5
yLineOnOff on
color 0,0,0
visibility hide
graphTypeDefault bar
priority 23

track Splice_prediction
superTrack on show
shortLabel Splice Predictions
longLabel Splice Predictions
type bigWig
autoscale off
viewLimits 0:15
maxHeightPixels 60:30:12
graphTypeDefault bar
yLineMark 15
yLineOnOff on
gridDefault on
showSubtrackColorOnUi on
priority 24
group PhyloCSF

    track Splice_plus
    container multiWig
    parent Splice_prediction
    aggregate transparentOverlay
    shortLabel SplicePred+
    longLabel Splice Predictions For + Strand
    visibility full

        track Donor_plus
        parent Splice_plus
        bigDataUrl http://data.broadinstitute.org/compbio1/PhyloCSFtracks/mm39/latest/Splice.donor.+.bw
        shortLabel SpliceDon+
        longLabel Splice Donor Predictions For + Strand 
        color 0,200,0
        type bigWig

        track Acceptor_plus
        parent Splice_plus
        bigDataUrl http://data.broadinstitute.org/compbio1/PhyloCSFtracks/mm39/latest/Splice.acceptor.+.bw
        shortLabel SpliceAcc+
        longLabel Splice Acceptor Predictions For + Strand
        color 200,0,0
        type bigWig

    track Splice_minus
    container multiWig
    parent Splice_prediction
    aggregate transparentOverlay
    shortLabel SplicePred-
    longLabel Splice Predictions For - Strand
    visibility full

        track Donor_minus
        parent Splice_minus
        bigDataUrl http://data.broadinstitute.org/compbio1/PhyloCSFtracks/mm39/latest/Splice.donor.-.bw
        shortLabel SpliceDon-
        longLabel Splice Donor Predictions For - Strand
        color 0,200,0
        type bigWig

        track Acceptor_minus
        parent Splice_minus
        bigDataUrl http://data.broadinstitute.org/compbio1/PhyloCSFtracks/mm39/latest/Splice.acceptor.-.bw
        shortLabel SpliceAcc-
        longLabel Splice Acceptor Predictions For - Strand
        color 200,0,0
        type bigWig